View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_527 (Length: 217)
Name: NF6864A_low_527
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_527 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 5e-95; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 11860131 - 11860326
Alignment:
| Q |
22 |
tttggtgtttcagaaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaact |
121 |
Q |
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| T |
11860131 |
tttggtgtttcagaaagcaaagaaactaaggacctttcttttgccatacaacattaacaaccctcggcttccgtacgaggtaaaggtgacaacatcaact |
11860230 |
T |
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| Q |
122 |
tgtgaaaagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtg |
217 |
Q |
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| T |
11860231 |
tgtgataagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtg |
11860326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 11827999 - 11828191
Alignment:
| Q |
25 |
ggtgtttcagaaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgt |
124 |
Q |
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| T |
11827999 |
ggtgtttcagacagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcgtcttccgcacgaggtaaagatgacaacgtcaacttgt |
11828098 |
T |
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| Q |
125 |
gaaaagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtg |
217 |
Q |
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| T |
11828099 |
gataagatcttcgacaccttcaagtactcgctacgcgtgttggatctacatgacttggggatcaagacagttccaagctctattgaggatgtg |
11828191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 210
Target Start/End: Original strand, 12038903 - 12039084
Alignment:
| Q |
26 |
gtgtttcagaaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtg |
125 |
Q |
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| T |
12038903 |
gtgtttgagaaagctaaaaaactgaggaccattcttttgccatacaacactgacaaccctcggcttcctgacgaggtacagatgacaacatcaacctgtg |
12039002 |
T |
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| Q |
126 |
aaaagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattga |
210 |
Q |
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| T |
12039003 |
ataagatctttaacaccttcaa-agct--atgcgcgtgttagatatgcatgacttggggatcaagacgattccgagctctattga |
12039084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 213
Target Start/End: Complemental strand, 11902410 - 11902235
Alignment:
| Q |
35 |
aaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatct |
134 |
Q |
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| T |
11902410 |
aaagcaaagaaactgagaaccattcttttgccgtacagcactaacaaccctcgccttccacacgaggtgaagatgacaacatcaacatgcgataagatct |
11902311 |
T |
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| Q |
135 |
tcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgagga |
213 |
Q |
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| T |
11902310 |
tcaacaccttcaag---tccctacgtgtgctggatctacatgacttggggattaagatggttccaacatctattgagga |
11902235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 213
Target Start/End: Original strand, 11731791 - 11731967
Alignment:
| Q |
37 |
agcaaagaaactaaggaccattcttttgccatacaa---cattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatc |
133 |
Q |
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| T |
11731791 |
agcaaagaaactgaggaccattttattgccatacaaaaacattaacaaccctcggcttccacacgaggtgaagatgacgacgccaacctgtgataagatc |
11731890 |
T |
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| Q |
134 |
ttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgagga |
213 |
Q |
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| T |
11731891 |
ttcaacaccttcaag---tccatgcacgtgttggatctacatgacttggggatcaagattgtaccaacctctattgagga |
11731967 |
T |
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