View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_53 (Length: 393)
Name: NF6864A_low_53
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 36 - 388
Target Start/End: Complemental strand, 39956731 - 39956376
Alignment:
| Q |
36 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgccctaaccgtaacctgtttctg |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||| |
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| T |
39956731 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgatactcacgactattgccctagccgtaacctgtttctg |
39956632 |
T |
|
| Q |
136 |
ccacgaaggaacagattttccttcaacccccttttcaacggaaatctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagcc |
235 |
Q |
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|||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956631 |
ccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagcc |
39956532 |
T |
|
| Q |
236 |
atgttacgatgaag---atgagtgaagagtgtggttgtgttgagtgtttggtttttgttttgcgattgttaatgaagtcgctttcgtgactactaggttg |
332 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956531 |
atgttacgatgaagatgatgagtgaaaagtgtggttgtgttgagtgtttggtttttgttttgcgattgttaatgaagtcgctttcgtgactactaggttg |
39956432 |
T |
|
| Q |
333 |
acatgctgtgtctatttatagtaaaggggtttggagagtttagagtggtttggttt |
388 |
Q |
| |
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| T |
39956431 |
acatgctgtgtctatttatagtaaaggggtttcgagagtttagagtggtttggttt |
39956376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 39941085 - 39940766
Alignment:
| Q |
1 |
gaaccctaacaacccagccgaaacatccaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgata |
100 |
Q |
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| T |
39941085 |
gaaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgata |
39940986 |
T |
|
| Q |
101 |
ctcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaacccccttttcaacggaaatctcatcaagttgttcatcgg |
200 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| |
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| T |
39940985 |
ctcacgactattgccctaacagtaacctgtttctgccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcgg |
39940886 |
T |
|
| Q |
201 |
aggtttcgacgtcacgtcgatgaggttctgaagccatgttacgatgaagatgagtgaagagtgtggttgtgt-tgagtgtttggtttttgttttgcgatt |
299 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| |
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| T |
39940885 |
aggtttcgacgtcacgtcgatgaggttctggagccatgttacgatgaagatgagtgaagagtgtggttgtatcagagtgtttggttttgattttgcgatt |
39940786 |
T |
|
| Q |
300 |
gttaatgaagtcgctttcgt |
319 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
39940785 |
gttaatgaagtcgctttcgt |
39940766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 28750694 - 28750890
Alignment:
| Q |
2 |
aaccctaacaacccagccgaaacatccaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatac |
101 |
Q |
| |
|
||||||||||| ||||| ||||||| ||| || |||||||||||||| |||||||||| ||||||||| || || ||||||||||| || ||||||| || |
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| T |
28750694 |
aaccctaacaatccagcagaaacattcaacgaaggaataatcccagttgtgagattcaacttcatcacgataaacgtgaacatcaccgacaacatgagac |
28750793 |
T |
|
| Q |
102 |
tcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaacccccttttcaacggaaatctcatcaagttgttcatc |
198 |
Q |
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|| | | |||||||||||| || |||||||||||||||| |||||||||| ||||||||| ||| ||||| || |||||||| || ||||||||||| |
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| T |
28750794 |
tcgcaaatattgccctaacagtgacctgtttctgccacgtaggaacagatgttccttcaaaccctttttccacagaaatctcctcgagttgttcatc |
28750890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 173
Target Start/End: Original strand, 28741849 - 28742020
Alignment:
| Q |
2 |
aaccctaacaacccagccgaaacatccaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatac |
101 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||| || || ||||||| || |
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| T |
28741849 |
aaccctaacaacccagctgaaacattcaaagaaggaataatcccagttgtgagattcagtttcatcacaatgaacgtgaacattaccgacaacatgagac |
28741948 |
T |
|
| Q |
102 |
tcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaacccccttttcaa |
173 |
Q |
| |
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| T |
28741949 |
tcacgaataatgccctaacagtaacctgcttctgccacgtaggaacaagttttccttcaaaccctttttcaa |
28742020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 7963656 - 7963790
Alignment:
| Q |
5 |
cctaacaacccagccgaaacatccaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactga-taacatgatactc |
103 |
Q |
| |
|
|||||||||||||| |||||| ||| || ||||||||||||| ||||||||||| ||||||| ||||| |||||||||| || ||||||| |||| |
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| T |
7963656 |
cctaacaacccagcaaaaacattcaacgaatgaataatcccagttgtgagattcagattcatcatgatgaatgtgaacatcatcgaccaacatgagactc |
7963755 |
T |
|
| Q |
104 |
actactattgccctaaccgtaacctgtttctgcca |
138 |
Q |
| |
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|| | ||| | ||||||| |||| | ||||||||| |
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| T |
7963756 |
acgaatataggcctaaccataacatttttctgcca |
7963790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 170
Target Start/End: Original strand, 7961163 - 7961298
Alignment:
| Q |
35 |
ggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgccctaaccgtaacctgtttct |
134 |
Q |
| |
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|||||||| ||||| |||||||| ||||||||||| ||||| |||||||| || | || | || |||||| | ||| ||| ||||||| || | || | |
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| T |
7961163 |
ggaataattccagttgtgagattgagcttcatcacgatgaatgtgaacattaccgtcaaaacgagactcacgaatatagccataaccgtgacattttggt |
7961262 |
T |
|
| Q |
135 |
gccacgaaggaacagattttccttcaaccccctttt |
170 |
Q |
| |
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||||| |||||| ||||||||||||| ||| |||| |
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| T |
7961263 |
gccacataggaactgattttccttcaaacccttttt |
7961298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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