View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_531 (Length: 214)
Name: NF6864A_low_531
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_531 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 33498969 - 33499182
Alignment:
| Q |
1 |
gtgttagagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaacctt |
100 |
Q |
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| T |
33498969 |
gtgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaacctt |
33499068 |
T |
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| Q |
101 |
ctcttctcttgagtagtgtgagtgcgaatagctcaatttaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgaaggaggaaact |
200 |
Q |
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| T |
33499069 |
ctcttctcttgagtagtgtgagagcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggaggaaact |
33499168 |
T |
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| Q |
201 |
tacaagcaagcagc |
214 |
Q |
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| T |
33499169 |
tacaagcaagcagc |
33499182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 33485758 - 33485867
Alignment:
| Q |
1 |
gtgttagagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaacctt |
100 |
Q |
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| T |
33485758 |
gtgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaacctt |
33485857 |
T |
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| Q |
101 |
ctcttctctt |
110 |
Q |
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| T |
33485858 |
ctctcctctt |
33485867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 33486058 - 33486159
Alignment:
| Q |
107 |
tcttgagtagtgtgagtgcgaatagctcaatttaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgaaggaggaaacttacaag |
206 |
Q |
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| T |
33486058 |
tcttgagtagtacgagtgtgaatagctcaattgaattgtcttaattttgcaggcaaaacaagcttcacatgacgcaaattcaatgaaggaaacatacaag |
33486157 |
T |
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| Q |
207 |
ca |
208 |
Q |
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|| |
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| T |
33486158 |
ca |
33486159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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