View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_532 (Length: 213)

Name: NF6864A_low_532
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_532
NF6864A_low_532
[»] chr3 (16 HSPs)
chr3 (77-206)||(25441629-25441757)
chr3 (78-185)||(45648068-45648174)
chr3 (116-206)||(37681284-37681377)
chr3 (102-187)||(3806589-3806674)
chr3 (102-187)||(44177070-44177155)
chr3 (116-205)||(26976172-26976264)
chr3 (102-187)||(44183751-44183836)
chr3 (102-187)||(37980218-37980303)
chr3 (118-185)||(21301821-21301888)
chr3 (2-60)||(51144534-51144592)
chr3 (144-193)||(17038016-17038065)
chr3 (147-207)||(23226995-23227056)
chr3 (4-60)||(20894369-20894425)
chr3 (99-177)||(38869423-38869501)
chr3 (93-161)||(1070549-1070617)
chr3 (130-206)||(7137457-7137533)
[»] chr1 (12 HSPs)
chr1 (77-201)||(11461996-11462122)
chr1 (1-60)||(25505589-25505648)
chr1 (77-186)||(6012710-6012818)
chr1 (102-187)||(8028741-8028825)
chr1 (4-60)||(7178355-7178411)
chr1 (1-60)||(24314505-24314564)
chr1 (1-60)||(34709527-34709590)
chr1 (116-205)||(50942529-50942620)
chr1 (77-204)||(13188153-13188279)
chr1 (98-206)||(38339875-38339986)
chr1 (113-206)||(50942401-50942496)
chr1 (135-187)||(26768229-26768281)
[»] chr2 (18 HSPs)
chr2 (93-206)||(352281-352398)
chr2 (102-187)||(2383012-2383097)
chr2 (127-204)||(34118995-34119075)
chr2 (79-206)||(31525159-31525287)
chr2 (1-60)||(10978601-10978660)
chr2 (132-187)||(18295464-18295519)
chr2 (116-206)||(30610341-30610434)
chr2 (79-184)||(31522672-31522775)
chr2 (4-60)||(5325232-5325288)
chr2 (4-60)||(15017144-15017200)
chr2 (92-206)||(26966442-26966559)
chr2 (102-184)||(40324434-40324514)
chr2 (147-201)||(41384933-41384990)
chr2 (77-170)||(352181-352274)
chr2 (145-206)||(19133838-19133902)
chr2 (112-187)||(21501244-21501318)
chr2 (135-184)||(13277888-13277937)
chr2 (149-205)||(16568232-16568291)
[»] chr8 (17 HSPs)
chr8 (99-205)||(40498479-40498588)
chr8 (102-187)||(415100-415185)
chr8 (102-187)||(1657831-1657916)
chr8 (102-187)||(14031816-14031901)
chr8 (102-187)||(6335777-6335863)
chr8 (3-60)||(4988663-4988720)
chr8 (77-178)||(34331855-34331955)
chr8 (102-187)||(37402260-37402345)
chr8 (100-185)||(22808823-22808909)
chr8 (132-187)||(36801828-36801883)
chr8 (10-60)||(36319095-36319145)
chr8 (4-60)||(13909097-13909153)
chr8 (100-185)||(32554667-32554752)
chr8 (77-160)||(14190310-14190392)
chr8 (131-177)||(14538002-14538048)
chr8 (145-187)||(29038385-29038427)
chr8 (99-187)||(13755933-13756020)
[»] chr6 (19 HSPs)
chr6 (1-60)||(504127-504186)
chr6 (133-206)||(11734171-11734247)
chr6 (77-185)||(15960375-15960482)
chr6 (1-60)||(15644222-15644281)
chr6 (1-60)||(8263731-8263790)
chr6 (1-60)||(19226999-19227058)
chr6 (102-187)||(13846463-13846548)
chr6 (93-205)||(34672631-34672746)
chr6 (144-206)||(20469612-20469677)
chr6 (11-60)||(5086645-5086694)
chr6 (135-203)||(25342069-25342140)
chr6 (116-206)||(31383372-31383463)
chr6 (77-164)||(15963535-15963621)
chr6 (93-180)||(657283-657370)
chr6 (135-205)||(5493024-5493097)
chr6 (84-186)||(1190936-1191036)
chr6 (75-152)||(17321792-17321868)
chr6 (116-185)||(22837769-22837838)
chr6 (1-60)||(33639406-33639462)
[»] scaffold0035 (1 HSPs)
scaffold0035 (102-187)||(81748-81833)
[»] chr7 (21 HSPs)
chr7 (102-187)||(5096570-5096655)
chr7 (1-60)||(25923556-25923615)
chr7 (1-60)||(45987534-45987593)
chr7 (112-187)||(24052707-24052782)
chr7 (102-185)||(39753652-39753735)
chr7 (93-187)||(1762670-1762764)
chr7 (124-206)||(13861487-13861572)
chr7 (1-60)||(34519200-34519259)
chr7 (11-60)||(14053995-14054044)
chr7 (11-60)||(14364023-14364072)
chr7 (77-206)||(14624060-14624191)
chr7 (5-60)||(17804434-17804486)
chr7 (4-60)||(21439524-21439580)
chr7 (136-187)||(1079615-1079666)
chr7 (132-204)||(11485558-11485630)
chr7 (112-206)||(35364889-35364986)
chr7 (133-204)||(22780010-22780081)
chr7 (93-206)||(31309660-31309775)
chr7 (138-206)||(5789183-5789254)
chr7 (4-60)||(6970402-6970458)
chr7 (93-161)||(44549422-44549489)
[»] chr5 (9 HSPs)
chr5 (102-187)||(41879855-41879940)
chr5 (111-187)||(28394716-28394792)
chr5 (116-187)||(27263888-27263959)
chr5 (102-185)||(31172350-31172433)
chr5 (2-60)||(22095893-22095951)
chr5 (77-166)||(38498305-38498393)
chr5 (12-60)||(5415715-5415763)
chr5 (12-60)||(11575316-11575364)
chr5 (77-206)||(17705297-17705428)
[»] chr4 (18 HSPs)
chr4 (102-187)||(23315828-23315913)
chr4 (1-60)||(8934587-8934646)
chr4 (1-60)||(19644476-19644535)
chr4 (2-60)||(23118921-23118979)
chr4 (112-187)||(22160288-22160364)
chr4 (2-60)||(23657158-23657216)
chr4 (3-60)||(7472893-7472950)
chr4 (1-53)||(33988364-33988416)
chr4 (1-52)||(48031753-48031804)
chr4 (1-60)||(49926535-49926594)
chr4 (111-187)||(23403873-23403949)
chr4 (4-60)||(30309917-30309973)
chr4 (11-60)||(19113904-19113953)
chr4 (136-185)||(53450918-53450967)
chr4 (116-176)||(3083210-3083270)
chr4 (138-176)||(34410123-34410161)
chr4 (133-187)||(38004330-38004384)
chr4 (149-186)||(5105805-5105842)
[»] scaffold0108 (1 HSPs)
scaffold0108 (5-60)||(10394-10449)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 77 - 206
Target Start/End: Complemental strand, 25441757 - 25441629
Alignment:
Q  77 gaaatatcccactacaaatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25441757 gaaatatcccactacaaatatgaacaatattatttatactataaatgaaagggagagagattttggtctgaattttttat-atttcaattatacctttaa 25441659  T
Q  177 ataaattttccattaatgttatattgttgg 206  Q
    |||||||||||||||||| |||||||||||    
T  25441658 ataaattttccattaatgctatattgttgg 25441629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 45648068 - 45648174
Alignment:
Q  78 aaatatcccactacaaatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaa 177  Q
    ||||||| |||||||| || |||| ||||||||||||||||||||||| |||| | ||||||||| || |||||||||||||||||||||||||||||||    
T  45648068 aaatatctcactacaa-taggaacgatattatttatactatatatgaaggggatatagattttgggctaaattttttataatttcaattatacctttaaa 45648166  T
Q  178 taaatttt 185  Q
    ||||||||    
T  45648167 taaatttt 45648174  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 37681284 - 37681377
Alignment:
Q  116 tatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc---attaatgttatattgttgg 206  Q
    |||||||||| ||||  |||||||||| |||||||||||||||||||||||||||| ||||| |||||||||   |||||||||||||||||||    
T  37681284 tatatatgaaggggatggagattttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttatattgttgg 37681377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 3806589 - 3806674
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||| ||| ||||||||||||||| || | ||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  3806589 aatactatatatactatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcc 3806674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 44177155 - 44177070
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||| ||| ||||||||||||||| || | ||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  44177155 aatactatatatactatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcc 44177070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 26976264 - 26976172
Alignment:
Q  116 tatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc---attaatgttatattgttg 205  Q
    ||||||||||||| |  ||||||||||  |||||| |||||||||||||||||||||||||| ||||||| |   ||||||||||||||||||    
T  26976264 tatatatgaaaggcattgagattttgggttgaattctttataatttcaattatacctttaaagaaatttttctatattaatgttatattgttg 26976172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 44183836 - 44183751
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||| ||| ||||||||||||||| || | ||||| ||||| |||||||||||||||||| ||||||||| ||||| |||||||||    
T  44183836 aatactatatatactatatatgaagggaatagagagtttgggctgaattttttataattttaattatacccttaaacaaattttcc 44183751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 37980218 - 37980303
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||| ||| ||||||||||||||| || | ||||| ||||| |||||||||||||||||| ||||||||| || || |||||||||    
T  37980218 aatactatatatactatatatgaagggaatagagactttgggctgaattttttataattttaattatacccttcaacaaattttcc 37980303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 21301888 - 21301821
Alignment:
Q  118 tatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaatttt 185  Q
    |||||||| |||| ||||||||||| |||||||||||||||||  ||||||||| ||||| |||||||    
T  21301888 tatatgaatgggatagagattttgggctgaattttttataattctaattatacccttaaacaaatttt 21301821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 51144592 - 51144534
Alignment:
Q  2 gtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||||||||||||||| | ||||||| |||| | |||||||||||||||| ||||||    
T  51144592 gtggcacgtcttgtgctaatgagactctggttgtttatataattccattttttattgtt 51144534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 17038065 - 17038016
Alignment:
Q  144 ctgaattttttataatttcaattatacctttaaataaattttccattaat 193  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||| |||||    
T  17038065 ctgaattttttattattttaattatacccttaaataaattttcctttaat 17038016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 23227056 - 23226995
Alignment:
Q  147 aattttttataatttcaattata-cctttaaataaattttccattaatgttatattgttgga 207  Q
    ||||||||||||||||||||||| |||||||| ||| | |  ||||||||||||||||||||    
T  23227056 aattttttataatttcaattataccctttaaaaaaaatctatattaatgttatattgttgga 23226995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 20894369 - 20894425
Alignment:
Q  4 ggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||| ||| ||||| | |||||||||||| |||||||||||||||||| ||||||    
T  20894369 ggcacgccttatgctaatgagactcttgttgttaatataattccatttttaattgtt 20894425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 38869501 - 38869423
Alignment:
Q  99 aacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaa 177  Q
    |||||||||||   || ||||||||||   || ||||||||| | |||||||||||||||||||||||| ||| |||||    
T  38869501 aacaatattatcattaatatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaa 38869423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 1070549 - 1070617
Alignment:
Q  93 aatatgaacaatattatttatactatatatgaaag-ggagagagattttggtctgaattttttataattt 161  Q
    ||||| |||||||||||| ||| |||||| ||||| ||| | ||||||||| ||||||||||||||||||    
T  1070549 aatataaacaatattattaatattatata-gaaagaggatatagattttgggctgaattttttataattt 1070617  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 7137533 - 7137457
Alignment:
Q  130 agagagattttggtctgaattttttataatttcaattatacctttaaataaattttccattaatgttatattgttgg 206  Q
    |||| |||||||| |||| |||||| | ||| |||||||| | ||||| ||||||| |  |||||||||||||||||    
T  7137533 agagggattttgggctgacttttttgttattccaattatatccttaaacaaatttttctataatgttatattgttgg 7137457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 201
Target Start/End: Complemental strand, 11462122 - 11461996
Alignment:
Q  77 gaaatatcccactacaaatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaa 176  Q
    ||||||||||||||||  || ||||| ||||||  ||| |||||||||| |||| ||||||||||  |||||||||||||||||||||||||||| ||||    
T  11462122 gaaatatcccactacag-taggaacattattatcaatattatatatgaaggggatagagattttgagctgaattttttataatttcaattatacccttaa 11462024  T
Q  177 ataaattttc---cattaatgttatatt 201  Q
    ||||||||||   |||||||||||||||    
T  11462023 ataaattttcctacattaatgttatatt 11461996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25505589 - 25505648
Alignment:
Q  1 tgtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    ||||||||||||||||||| | |||||||||||| |||||||||||||||||| ||||||    
T  25505589 tgtggcacgtcttgtgctaatgagactcttgttgttaatataattccatttttaattgtt 25505648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 6012818 - 6012710
Alignment:
Q  77 gaaatatcccactacaaatatgaacaatattatttatactatatatgaaagggagagaga-ttttggtctgaattttttataatttcaattataccttta 175  Q
    ||||||||||||||||| ||  || |||||||| ||||||||||||||| |||| ||||| ||||||| ||||||||||||||||  ||||||||| |||    
T  6012818 gaaatatcccactacaa-tagaaagaatattatatatactatatatgaaggggatagagacttttggt-tgaattttttataattctaattataccatta 6012721  T
Q  176 aataaattttc 186  Q
    || | ||||||    
T  6012720 aacatattttc 6012710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 8028825 - 8028741
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||| ||| ||||||||||||||| || | ||||| ||||| |||| ||||||||||||||||||||||| ||||| |||||||||    
T  8028825 aatactatatatactatatatgaagggaatagagactttgggctga-ttttttataatttcaattatacccttaaacaaattttcc 8028741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 7178411 - 7178355
Alignment:
Q  4 ggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||| ||||||||| | |||||||||||| |||||||||||||||||||||||||    
T  7178411 ggcacgccttgtgctaatgagactcttgttgttaatataattccatttttgattgtt 7178355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 24314564 - 24314505
Alignment:
Q  1 tgtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    ||||||||||||||||||| | |||||| ||||| |||||||||| ||||||||||||||    
T  24314564 tgtggcacgtcttgtgctagtgagactcctgttgttaatataatttcatttttgattgtt 24314505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34709527 - 34709590
Alignment:
Q  1 tgtggcacgtcttgtgctattaagactcttgt----tggtaatataattccatttttgattgtt 60  Q
    ||||||||||||||||||||| ||||||||||    || |||||||||||||||||||||||||    
T  34709527 tgtggcacgtcttgtgctattgagactcttgtgtgctgttaatataattccatttttgattgtt 34709590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 50942620 - 50942529
Alignment:
Q  116 tatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc---attaatgttatattgttg 205  Q
    |||||||||| |||| ||||||||||  || ||||||| |||||||||||||||  |||||| |||||||||   ||||||||||||||||||    
T  50942620 tatatatgaaggggatagagattttgcgctaaattttt-ataatttcaattatatatttaaacaaattttcctatattaatgttatattgttg 50942529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 204
Target Start/End: Complemental strand, 13188279 - 13188153
Alignment:
Q  77 gaaatatcccactacaaatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaa 176  Q
    |||||||| |||||||| |||||||||| ||||  ||| |||||||| | || | | | ||||||| |||||||||||||||||||||||||||| |  |    
T  13188279 gaaatatctcactacaa-tatgaacaatgttatcaatattatatatgtatgg-ataaatattttgggctgaattttttataatttcaattataccct--a 13188184  T
Q  177 ataaattttcc---attaatgttatattgtt 204  Q
    ||||||||| |   |||||||||||||||||    
T  13188183 ataaatttttctatattaatgttatattgtt 13188153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 38339986 - 38339875
Alignment:
Q  98 gaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc---attaatg 194  Q
    ||||||||||||  ||| |||||||||  |||  ||| | ||||| ||||| ||||||||||| |||||||||| ||||  |||||||||   |||||||    
T  38339986 gaacaatattatcaatattatatatgacgggggtagaaaatttgggctgaactttttataattccaattatacccttaatcaaattttcctatattaatg 38339887  T
Q  195 ttatattgttgg 206  Q
    ||||||| ||||    
T  38339886 ttatattattgg 38339875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 50942496 - 50942401
Alignment:
Q  113 tactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc---attaatgttatattgttgg 206  Q
    ||||||||||||| |||| || |||||||  || ||||||| |||||||||||||||  |||||| ||||||| |   |||||||||||||| ||||    
T  50942496 tactatatatgaaggggatagtgattttgcgctaaattttt-ataatttcaattatatatttaaacaaattttactatattaatgttatattattgg 50942401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 26768281 - 26768229
Alignment:
Q  135 gattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||||||| |||| |||||| | |||||| ||||||||||||| |||||||||    
T  26768281 gattttgggctgatttttttgttatttcagttatacctttaaacaaattttcc 26768229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 93 - 206
Target Start/End: Original strand, 352281 - 352398
Alignment:
Q  93 aatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattata-cctttaaataaattttcc---a 188  Q
    |||| |||||||||||||  || |||||||||| |||| ||||||||||| || |||||||||||||| |||||||| |||| |||||||||||||   |    
T  352281 aataggaacaatattattagtattatatatgaaggggatagagattttgggctaaattttttataattccaattatacccttaaaataaattttcctata 352380  T
Q  189 ttaatgttatattgttgg 206  Q
    ||||||||||||||||||    
T  352381 ttaatgttatattgttgg 352398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 2383012 - 2383097
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||| ||| ||||||||||||||| || | ||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  2383012 aatactatatatactatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaataaattttcc 2383097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 34119075 - 34118995
Alignment:
Q  127 gggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttc-ca--ttaatgttatattgtt 204  Q
    |||| ||| ||||||| |||||||||||||||||| ||||||| |||||||||||||||| ||  ||||||||||||||||    
T  34119075 gggatagaaattttggactgaattttttataatttgaattatatctttaaataaattttctcatcttaatgttatattgtt 34118995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 206
Target Start/End: Original strand, 31525159 - 31525287
Alignment:
Q  79 aatatcccactacaaatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaat 178  Q
    ||||||||||| ||| || ||||||||||||  ||| |||||||||| |||| |||||||||    || ||||||||||||| |||||||||| ||||||    
T  31525159 aatatcccacttcaa-taagaacaatattatcaatattatatatgaaggggatagagattttaagttg-attttttataattccaattatacccttaaat 31525256  T
Q  179 aaattttcc---attaatgttatattgttgg 206  Q
    ||||||| |   |||||||||||||| ||||    
T  31525257 aaatttttctatattaatgttatattattgg 31525287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 10978601 - 10978660
Alignment:
Q  1 tgtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||||| |||||||||||| |||||||||||| ||||||||| |||||||| ||||||    
T  10978601 tgtggcacatcttgtgctattgagactcttgttgttaatataatcccatttttaattgtt 10978660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 18295519 - 18295464
Alignment:
Q  132 agagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    ||||||||||| |||||||||||||||||||| |||||| |||||| |||||||||    
T  18295519 agagattttgggctgaattttttataatttcatttatacttttaaacaaattttcc 18295464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 30610434 - 30610341
Alignment:
Q  116 tatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttc---cattaatgttatattgttgg 206  Q
    ||||||||||||||| ||||||||||  ||||| ||||||||||| ||||| |||| | ||| ||||||||    |||||||||||||||||||    
T  30610434 tatatatgaaagggatagagattttgagctgaactttttataattccaattgtaccctgaaacaaattttcatatattaatgttatattgttgg 30610341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 31522672 - 31522775
Alignment:
Q  79 aatatcccactacaaatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaat 178  Q
    ||||||||||| ||| || ||||||||||||  ||| |||||||||| |||| ||||||||| |  ||| |||||||||||| |||||||||| |||||     
T  31522672 aatatcccacttcaa-taggaacaatattatcaatattatatatgaaggggatagagattttaggttga-ttttttataattacaattatacccttaaac 31522769  T
Q  179 aaattt 184  Q
    ||||||    
T  31522770 aaattt 31522775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 5325288 - 5325232
Alignment:
Q  4 ggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||| ||||||||| | |||||||||||| |||||||||| ||||||||||||||    
T  5325288 ggcacgccttgtgctaatgagactcttgttgttaatataatttcatttttgattgtt 5325232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 15017200 - 15017144
Alignment:
Q  4 ggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||| ||||||||| | |||||||||||| |||||||||||||||||| ||||||    
T  15017200 ggcacgccttgtgctaatgagactcttgttgttaatataattccattttttattgtt 15017144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 206
Target Start/End: Complemental strand, 26966559 - 26966442
Alignment:
Q  92 aaatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaat---tttcca 188  Q
    ||||| ||||||||||||  ||  ||||||||||  |||  |||||||| | ||||||||||||||||| |||||||||| ||||| |||    |||  |    
T  26966559 aaataggaacaatattatcaatgttatatatgaagaggatcgagatttttgactgaattttttataattccaattatacccttaaacaaaaaaatttata 26966460  T
Q  189 ttaatgttatattgttgg 206  Q
    ||||||||||||||||||    
T  26966459 ttaatgttatattgttgg 26966442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 40324514 - 40324434
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattt 184  Q
    |||| ||| ||||||||||||||| || |||||   ||||| ||||| |||||||||||||||||||||| ||||| ||||||    
T  40324514 aatactatatatactatatatgaagggtagagac--tttgggctgaaatttttataatttcaattatacccttaaacaaattt 40324434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 41384933 - 41384990
Alignment:
Q  147 aattttttataatttcaattatacctttaaataaattttcc---attaatgttatatt 201  Q
    |||||||||||||||||||||||| |||||| |||||||||   ||||||||||||||    
T  41384933 aattttttataatttcaattatacatttaaacaaattttcctatattaatgttatatt 41384990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 170
Target Start/End: Original strand, 352181 - 352274
Alignment:
Q  77 gaaatatcccactacaaatatgaacaatattatttatactatatatgaaagggagagagattttggtctga-attttttataatttcaattatac 170  Q
    ||||||||||||||||| || ||||||||||||   || |||||||||| |||| ||||||||||| || |  |||||||||||| |||||||||    
T  352181 gaaatatcccactacaa-taggaacaatattatcagtattatatatgaaggggatagagattttgggctaattttttttataattccaattatac 352274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 19133838 - 19133902
Alignment:
Q  145 tgaattttttataatttcaattatacctttaaataaattttcc---attaatgttatattgttgg 206  Q
    |||| |||||||||||||||||||||| ||||| |||||||||   |||||||||||| ||||||    
T  19133838 tgaaatttttataatttcaattatacccttaaacaaattttccaatattaatgttataatgttgg 19133902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 21501318 - 21501244
Alignment:
Q  112 atactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    ||||||||||| ||||||| ||||||||||| || || ||||||||||| |||| ||||  ||||| |||||||||    
T  21501318 atactatatat-aaagggatagagattttgggctaaagtttttataattccaatcatactcttaaacaaattttcc 21501244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 13277888 - 13277937
Alignment:
Q  135 gattttggtctgaattttttataatttcaattatacctttaaataaattt 184  Q
    |||||||| |||||||||| || |||||||||||| | ||||||||||||    
T  13277888 gattttgggctgaatttttcattatttcaattatatccttaaataaattt 13277937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 16568232 - 16568291
Alignment:
Q  149 ttttttataatttcaattatacctttaaataaattttcc---attaatgttatattgttg 205  Q
    |||||||| |||| ||||||||||||||||||||||| |   | ||||||||||||||||    
T  16568232 ttttttattattttaattatacctttaaataaatttttctatactaatgttatattgttg 16568291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 40498588 - 40498479
Alignment:
Q  99 aacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc---attaatgt 195  Q
    |||||||||||| ||| |||||||||| |||| ||||| ||||| ||||||||||||||||| ||||||||| |||||| |||| ||||   |||||| |    
T  40498588 aacaatattattaatattatatatgaacgggacagagagtttgggctgaattttttataattccaattatacttttaaacaaatattcctttattaatat 40498489  T
Q  196 tatattgttg 205  Q
    ||||||||||    
T  40498488 tatattgttg 40498479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 415100 - 415185
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||| ||| ||||||||||||||| || | ||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  415100 aatactatatatactatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcc 415185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 1657831 - 1657916
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||| ||| ||||||||||||||| || | ||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  1657831 aatactatatatactatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcc 1657916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 14031901 - 14031816
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||| ||| ||||||||||||||| || | ||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  14031901 aatactatatatactatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcc 14031816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 6335777 - 6335863
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattata-cctttaaataaattttcc 187  Q
    |||| ||| ||||||||||||||| || | ||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||    
T  6335777 aatactatatatactatatatgaagggaatagagactttgggctgaattttttataatttcaattataccctttaaacaaattttcc 6335863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 4988663 - 4988720
Alignment:
Q  3 tggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  4988663 tggcacatcttgtgctattgagactcttgttggtaatataattctatttttgattgtt 4988720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 34331855 - 34331955
Alignment:
Q  77 gaaatatcccactacaaatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaa 176  Q
    ||||||||||||| ||| |  ||||||||||||   || |||||||||| |||| ||||||||||| || ||||||||||||||||||||||||| ||||    
T  34331855 gaaatatcccactccaa-tgggaacaatattatcattattatatatgaaggggatagagattttgggctaaattttttataatttcaattatacccttaa 34331953  T
Q  177 at 178  Q
    ||    
T  34331954 at 34331955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 37402345 - 37402260
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||| ||| ||||||||||||||| |  | ||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  37402345 aatactatatatactatatatgaaggaaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcc 37402260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 22808909 - 22808823
Alignment:
Q  100 acaatattatttatactatatatgaaagggagagagattttggtctgaatttttt-ataatttcaattatacctttaaataaatttt 185  Q
    ||||||||||  ||| |||||||||| ||||  |||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||    
T  22808909 acaatattatcaatattatatatgaaggggattgagattttggactgaatttttttataatttcaattatacccttaaacaaatttt 22808823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 36801828 - 36801883
Alignment:
Q  132 agagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    ||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  36801828 agagactttgggctgaattttttataatttcaattatacccttaaacaaattttcc 36801883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 36319095 - 36319145
Alignment:
Q  10 tcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||||||||    
T  36319095 tcttgtgctattgagactcttgttgttaatataatcccatttttgattgtt 36319145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 13909153 - 13909097
Alignment:
Q  4 ggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||| ||||||||| |||| ||||||||| |||||||||| ||||||||||||||    
T  13909153 ggcacgccttgtgctaataaggctcttgttgttaatataatttcatttttgattgtt 13909097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 32554667 - 32554752
Alignment:
Q  100 acaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaatttt 185  Q
    ||||||||||  ||| ||||||||||  ||| | |||||||||  |  |||||||||||||||||||||||| ||||||| |||||    
T  32554667 acaatattatcaatattatatatgaagaggatatagattttggattagattttttataatttcaattatacccttaaatacatttt 32554752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 14190392 - 14190310
Alignment:
Q  77 gaaatatcccactacaaatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatt 160  Q
    |||||||||||||| ||||| ||| ||||||||  ||| |||||  |||||||| | |||||||||  ||||||||||||||||    
T  14190392 gaaatatcccacta-aaataggaataatattatcaatattatatccgaaagggataaagattttggagtgaattttttataatt 14190310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 14538002 - 14538048
Alignment:
Q  131 gagagattttggtctgaattttttataatttcaattatacctttaaa 177  Q
    |||||||||||| ||  ||||||||| ||||||||||||||||||||    
T  14538002 gagagattttgggctatattttttattatttcaattatacctttaaa 14538048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 29038427 - 29038385
Alignment:
Q  145 tgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||||| |||||||||||||||||||| ||||| |||||||||    
T  29038427 tgaattatttataatttcaattatacccttaaacaaattttcc 29038385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 13755933 - 13756020
Alignment:
Q  99 aacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||||||||||  ||| ||||| |||| |||  ||||||||||| || |||  | |||||||||||||||||| ||||| |||||||||    
T  13755933 aacaatattatcaatattatatctgaaggggt-agagattttgggctaaataatatataatttcaattatacccttaaacaaattttcc 13756020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 504127 - 504186
Alignment:
Q  1 tgtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  504127 tgtggcacgtcttgtgctattgagactcttgttgttaatataattccatttttgattgtt 504186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 11734171 - 11734247
Alignment:
Q  133 gagattttggtctgaattttttataatttcaattatacctttaaataaattttcc---attaatgttatattgttgg 206  Q
    |||||||||| ||||||||||||||||| || |||||||||||||||||||||||   |||||||||||||||||||    
T  11734171 gagattttgggctgaattttttataattccagttatacctttaaataaattttcctatattaatgttatattgttgg 11734247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 15960482 - 15960375
Alignment:
Q  77 gaaatatcccactacaaatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaa 176  Q
    |||||||| |||||||| || ||| ||||||||  ||| |||||||||| | || ||| ||||||| |||||||||||||||||||||||||||| ||||    
T  15960482 gaaatatctcactacaa-taggaataatattatcaatattatatatgaatgagatagaaattttgggctgaattttttataatttcaattatacccttaa 15960384  T
Q  177 ataaatttt 185  Q
    | |||||||    
T  15960383 acaaatttt 15960375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 15644222 - 15644281
Alignment:
Q  1 tgtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    ||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||    
T  15644222 tgtggcacgtcttgtgctaatgagactcttgttgttaatataattccatttttgattgtt 15644281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8263790 - 8263731
Alignment:
Q  1 tgtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| |||||||| ||||||    
T  8263790 tgtggcacgtcttgtgctattgagactcttgttgttaatataatcccattttttattgtt 8263731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 19227058 - 19226999
Alignment:
Q  1 tgtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||||| |||||||||||| |||||||||||| |||| ||||||||||||||||||||    
T  19227058 tgtggcacatcttgtgctattgagactcttgttgttaatttaattccatttttgattgtt 19226999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 13846463 - 13846548
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||| ||| |||||| |||||||| || | ||||| ||||| |||||||||||||||||| ||||||||| ||||| |||||||||    
T  13846463 aatactatatatactgtatatgaagggaatagagactttgggctgaattttttataatttaaattataccattaaacaaattttcc 13846548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 34672746 - 34672631
Alignment:
Q  93 aatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc---at 189  Q
    |||| ||||||||||||  ||  ||||||||||  |||  |||||||| | ||||||||||||||||| |||||||||| |||||||||||||     ||    
T  34672746 aataggaacaatattatcaatgttatatatgaagaggattgagatttttgactgaattttttataattccaattatacccttaaataaatttttttatat 34672647  T
Q  190 taatgttatattgttg 205  Q
    ||||||||||||||||    
T  34672646 taatgttatattgttg 34672631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 20469677 - 20469612
Alignment:
Q  144 ctgaattttttataatttcaattatacctttaaataaattttcc---attaatgttatattgttgg 206  Q
    ||||||||||||||||| |||||||||| ||||| |||||||||   |||||||||||||||||||    
T  20469677 ctgaattttttataattccaattatacccttaaacaaattttcctatattaatgttatattgttgg 20469612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 5086645 - 5086694
Alignment:
Q  11 cttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    ||||||||| | |||||||||||| |||||||||||||||||||||||||    
T  5086645 cttgtgctaatgagactcttgttgttaatataattccatttttgattgtt 5086694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 25342069 - 25342140
Alignment:
Q  135 gattttggtctgaattttttataatttcaattatacctttaaataaattttcc---attaatgttatattgt 203  Q
    |||||||| ||| |||||||||||||||||||||||| ||||| ||||||| |   ||||||||||||||||    
T  25342069 gattttggactggattttttataatttcaattatacccttaaacaaatttttctatattaatgttatattgt 25342140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 31383372 - 31383463
Alignment:
Q  116 tatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttc--cattaatgttatattgttgg 206  Q
    |||||||||| ||||  |||||||||| |||| |||||||||||| |||||||||  ||||| ||||||||   |||||||||||||||||||    
T  31383372 tatatatgaaggggattgagattttgg-ctgatttttttataattccaattatacacttaaacaaattttctatattaatgttatattgttgg 31383463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 15963621 - 15963535
Alignment:
Q  77 gaaatatcccactacaaatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaa 164  Q
    |||||||| |||||||| || ||||||||||||  |||||||||||||| | || ||||||||||| |  | ||||||||||||||||    
T  15963621 gaaatatctcactacaa-taggaacaatattatcaatactatatatgaaggagatagagattttggacaaatttttttataatttcaa 15963535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 657283 - 657370
Alignment:
Q  93 aatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataa 180  Q
    |||| ||| ||||||||  ||||||||||| |||| || ||||||||||| || || ||||||| ||||||| |||||| || |||||    
T  657283 aataagaataatattatcaatactatatataaaagtgatagagattttggactaaagtttttattatttcaactatacccttgaataa 657370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 5493097 - 5493024
Alignment:
Q  135 gattttggtctgaattttttataatttcaattatacctttaaataaattttcc---attaatgttatattgttg 205  Q
    |||||||| |||||||||||||||||  ||||||||| ||||| ||||||| |   | ||||||||||||||||    
T  5493097 gattttgggctgaattttttataattataattatacccttaaacaaatttttctataataatgttatattgttg 5493024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 1191036 - 1190936
Alignment:
Q  84 cccactacaaatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaatt 183  Q
    |||||||||| ||| || |||||||| |||||||||| | || |||| |||||||||||  | || ||||||| |||||||||||||| ||||| ||| |    
T  1191036 cccactacaa-tataaataatattatctatactatatttaaaggggatagagattttgg-attaaatttttattatttcaattatacccttaaacaaact 1190939  T
Q  184 ttc 186  Q
    |||    
T  1190938 ttc 1190936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 17321792 - 17321868
Alignment:
Q  75 aagaaatatcccactacaaatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaatttt 152  Q
    |||||| ||||||||||||| |||||||||||||| ||||| |||||| || |||| |  |||||||| | |||||||    
T  17321792 aagaaacatcccactacaaa-atgaacaatattatctatacaatatataaaggggataaggattttggacagaatttt 17321868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 22837769 - 22837838
Alignment:
Q  116 tatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaatttt 185  Q
    |||||||||| | || || |||||||| || || ||||||||||||||||||||  |||||| |||||||    
T  22837769 tatatatgaaggagatagggattttggccttaaatttttataatttcaattatatttttaaacaaatttt 22837838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33639462 - 33639406
Alignment:
Q  1 tgtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||| ||| |||||||||||| |||||||||||   ||||||||| ||||||||||||||    
T  33639462 tgtgacacatcttgtgctattgagactcttgtt---aatataatttcatttttgattgtt 33639406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 81748 - 81833
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||| ||| ||||||||||||||| || | ||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  81748 aatactatatatactatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcc 81833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 5096655 - 5096570
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||| ||| ||||||||||||||| || | ||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  5096655 aatactatatatactatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcc 5096570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25923615 - 25923556
Alignment:
Q  1 tgtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||    
T  25923615 tgtggcacgtcttgtgctattgagactcttgttgttaatataatcccatttttgattgtt 25923556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 45987593 - 45987534
Alignment:
Q  1 tgtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  45987593 tgtggcacatcttgtgctattgagactcttgttgttaatataattccatttttgattgtt 45987534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 24052782 - 24052707
Alignment:
Q  112 atactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    ||||||||||||||||| | ||||| ||||| |||||||||||||||||  ||||||||| ||||||| |||||||    
T  24052782 atactatatatgaaaggaatagagactttgggctgaattttttataattctaattatacccttaaatagattttcc 24052707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 39753735 - 39753652
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaatttt 185  Q
    |||| ||| ||||||||||||||| || | ||||| ||||| |||||||||||||||||||||||||||| | ||| |||||||    
T  39753735 aatactatatatactatatatgaagggaatagagactttgggctgaattttttataatttcaattataccctcaaacaaatttt 39753652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 187
Target Start/End: Complemental strand, 1762764 - 1762670
Alignment:
Q  93 aatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||| ||||||||||||  ||| ||||||| ||  ||| | ||||||||| ||| ||||||||||||| |||||||||| |||||||||||||||    
T  1762764 aataggaacaatattatcaatattatatatcaagtggataaagattttgggctgtattttttataattccaattatacccttaaataaattttcc 1762670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 13861572 - 13861487
Alignment:
Q  124 aaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc---attaatgttatattgttgg 206  Q
    ||||||| ||||||||||| ||||| ||||||||||| |||||||||| |||||  | ||||||   |||||||||||||||||||    
T  13861572 aaagggaaagagattttgggctgaaatttttataattccaattatacccttaaaggagttttcctatattaatgttatattgttgg 13861487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34519200 - 34519259
Alignment:
Q  1 tgtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||||| |||||||||||| |||||||||||| |||||| ||| ||||||||||||||    
T  34519200 tgtggcacatcttgtgctattgagactcttgttgttaatattatttcatttttgattgtt 34519259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 14054044 - 14053995
Alignment:
Q  11 cttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||||    
T  14054044 cttgtgctattgagactcttattgttaatataattccatttttgattgtt 14053995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 14364072 - 14364023
Alignment:
Q  11 cttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||||    
T  14364072 cttgtgctattgagactcttattgttaatataattccatttttgattgtt 14364023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 206
Target Start/End: Complemental strand, 14624191 - 14624060
Alignment:
Q  77 gaaatatcccactacaaatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaa 176  Q
    |||||||| |||||||| |||||||||||||||  ||| |||| ||||| || |  |||||| ||| |||| ||||||  ||||||||||||||| ||||    
T  14624191 gaaatatctcactacaa-tatgaacaatattatcaatattatacatgaatggtattgagattatgggctgattttttttaaatttcaattatacccttaa 14624093  T
Q  177 ataaattttc---cattaatgttatattgttgg 206  Q
      ||||||||    ||||||||| |||||||||    
T  14624092 tcaaattttcatatattaatgttgtattgttgg 14624060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 17804486 - 17804434
Alignment:
Q  5 gcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    ||||||||||||||||| ||||||||||   ||||||||| |||||||||||||||    
T  17804486 gcacgtcttgtgctattgagactcttgt---taatataatcccatttttgattgtt 17804434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 21439524 - 21439580
Alignment:
Q  4 ggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||| |||| |||| | |||||||||||| |||||||||| ||||||||||||||    
T  21439524 ggcacgccttgcgctaatgagactcttgttgttaatataatttcatttttgattgtt 21439580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 1079615 - 1079666
Alignment:
Q  136 attttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    ||||||| |||||||||||||||||  ||||||||| ||||| |||||||||    
T  1079615 attttggactgaattttttataattcaaattatacccttaaagaaattttcc 1079666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 11485558 - 11485630
Alignment:
Q  132 agagattttggtctgaattttttataatttcaattatacctttaaataaattttcc---attaatgttatattgtt 204  Q
    ||||||||| | |||||||||||||||||||||||   || ||||| |||||||||   |||||||||||||||||    
T  11485558 agagattttaggctgaattttttataatttcaatt---cccttaaacaaattttcctatattaatgttatattgtt 11485630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 35364889 - 35364986
Alignment:
Q  112 atactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttc---cattaatgttatattgttgg 206  Q
    |||||||||| ||| | || | ||||||||| || |||||||||||||| |||||||| ||| ||| ||||||||    |||||||||||||| ||||    
T  35364889 atactatatacgaaggagatatagattttgggctaaattttttataattccaattatatcttcaaacaaattttcttatattaatgttatattattgg 35364986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 22780081 - 22780010
Alignment:
Q  133 gagattttggtctgaattttttataatttcaattatacctttaaataaattttcc---attaatgttatattgtt 204  Q
    ||||||||||  |||||||||||||||||||   ||||| || ||||||||||||   |||||||||||||||||    
T  22780081 gagattttgggttgaattttttataatttca---ataccatttaataaattttcctaaattaatgttatattgtt 22780010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 206
Target Start/End: Original strand, 31309660 - 31309775
Alignment:
Q  93 aatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc---at 189  Q
    ||||||||| |||||||  ||| |||||||||| | ||  ||| ||||||| ||||||||| ||||||  ||||||||| ||||| |||||||     ||    
T  31309660 aatatgaactatattatcaatattatatatgaaggagattgaggttttggtatgaattttt-ataattctaattatacccttaaacaaattttattatat 31309758  T
Q  190 taatgttatattgttgg 206  Q
    |||||||||||||||||    
T  31309759 taatgttatattgttgg 31309775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 5789183 - 5789254
Alignment:
Q  138 tttggtctgaattttttataatttcaattatacctttaaataaattttc---cattaatgttatattgttgg 206  Q
    ||||| ||||| ||||||| ||||||||||||||  |||| ||||||||    |||||||||||||||||||    
T  5789183 tttgggctgaaatttttatgatttcaattatacccataaacaaattttcttatattaatgttatattgttgg 5789254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 6970458 - 6970402
Alignment:
Q  4 ggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||| |||||||||   || ||||||||| |||||||||| ||||||||||||||    
T  6970458 ggcacgccttgtgctaacgaggctcttgttgttaatataatttcatttttgattgtt 6970402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 44549489 - 44549422
Alignment:
Q  93 aatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataattt 161  Q
    |||| ||||||||||||  ||| |||||||||| |||| | ||||||| | ||||||||||||||||||    
T  44549489 aataagaacaatattatcaatattatatatgaa-gggatatagattttaggctgaattttttataattt 44549422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 41879940 - 41879855
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||| ||| ||||||||||||||| || | ||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  41879940 aatactatatatactatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcc 41879855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 28394792 - 28394716
Alignment:
Q  111 tatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    ||||||||||||||| || | ||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  28394792 tatactatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcc 28394716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 27263959 - 27263888
Alignment:
Q  116 tatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||||||||| || | ||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  27263959 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcc 27263888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 31172433 - 31172350
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaatttt 185  Q
    |||| ||| ||||||||||||||| || |  |||| ||||| |||||||||||||||||||||||||||| | ||| |||||||    
T  31172433 aatactatatatactatatatgaagggaatcgagactttgggctgaattttttataatttcaattataccctcaaacaaatttt 31172350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 22095893 - 22095951
Alignment:
Q  2 gtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||||| ||||||||| | ||||||| |||| | |||||||||||||||||||||||    
T  22095893 gtggcacgccttgtgctaatgagactctggttgtttatataattccatttttgattgtt 22095951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 38498393 - 38498305
Alignment:
Q  77 gaaatatcccactacaaatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaatt 166  Q
    ||||||||||||||||| ||  |||||||||||  ||| |||||| ||| || | | ||||||||| |||||||||||||| ||||||||    
T  38498393 gaaatatcccactacaa-tagaaacaatattatcaatattatatacgaagggaatatagattttgggctgaattttttatagtttcaatt 38498305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 5415715 - 5415763
Alignment:
Q  12 ttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    ||||| |||| ||| |||||||| |||||||||||||||||||||||||    
T  5415715 ttgtggtattgagaatcttgttgttaatataattccatttttgattgtt 5415763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 11575316 - 11575364
Alignment:
Q  12 ttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||||| | |||||||||||| ||||||||||||||||| |||||||    
T  11575316 ttgtgctaatgagactcttgttgttaatataattccattttcgattgtt 11575364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 206
Target Start/End: Original strand, 17705297 - 17705428
Alignment:
Q  77 gaaatatcccactacaaatatgaacaatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaa 176  Q
    |||||||| |||||||| |||||||||||||||  ||| |||| ||||| || |  |||||| ||| |||| ||||||  ||||| ||||||||| ||||    
T  17705297 gaaatatctcactacaa-tatgaacaatattatcaatattatacatgaatggtattgagattatgggctgattttttttaaattttaattatacccttaa 17705395  T
Q  177 ataaattttcc---attaatgttatattgttgg 206  Q
      ||||||| |   ||||||||| |||||||||    
T  17705396 tcaaatttttctatattaatgttgtattgttgg 17705428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 23315828 - 23315913
Alignment:
Q  102 aatattatttatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||| ||| ||||||||||||||| || | ||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  23315828 aatactatatatactatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcc 23315913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8934646 - 8934587
Alignment:
Q  1 tgtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    ||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||    
T  8934646 tgtggcacgtcttgtgctattgagactattgttgttaatataattccatttttgattgtt 8934587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 19644535 - 19644476
Alignment:
Q  1 tgtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  19644535 tgtggcacatcttgtgctattgagactcttgttgttaatataattccatttttgattgtt 19644476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 23118979 - 23118921
Alignment:
Q  2 gtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||    
T  23118979 gtggcacgtcttgtgctattgagactcttgttgttaatataatcccatttttgattgtt 23118921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 22160288 - 22160364
Alignment:
Q  112 atactatatatgaaagggagagagattttggtctgaattttttataatttcaattata-cctttaaataaattttcc 187  Q
    |||||||||||||| || | ||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||    
T  22160288 atactatatatgaagggaatagagactttgggctgaattttttataatttcaattataccctttaaacaaattttcc 22160364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 23657216 - 23657158
Alignment:
Q  2 gtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||||||||||||||||| |||||||||||| ||||||||| |||||||| ||||||    
T  23657216 gtggcacgtcttgtgctattgagactcttgttgttaatataatcccatttttaattgtt 23657158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 7472950 - 7472893
Alignment:
Q  3 tggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    ||||||||||||||||||| |||||||||||  |||||||||||||||||| ||||||    
T  7472950 tggcacgtcttgtgctattgagactcttgttattaatataattccattttttattgtt 7472893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33988364 - 33988416
Alignment:
Q  1 tgtggcacgtcttgtgctattaagactcttgttggtaatataattccattttt 53  Q
    ||||||||||||||||||| | |||||||||||| ||||||||||||||||||    
T  33988364 tgtggcacgtcttgtgctaatgagactcttgttgttaatataattccattttt 33988416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 48031753 - 48031804
Alignment:
Q  1 tgtggcacgtcttgtgctattaagactcttgttggtaatataattccatttt 52  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  48031753 tgtggcacgccttgtgctattgagactcttgttgttaatataattccatttt 48031804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 49926535 - 49926594
Alignment:
Q  1 tgtggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    ||||||||||||||||||| | |||||||||||| ||||||||||| |||||| ||||||    
T  49926535 tgtggcacgtcttgtgctaatgagactcttgttgttaatataattctattttttattgtt 49926594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 23403873 - 23403949
Alignment:
Q  111 tatactatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    ||||||||||||||| |||| ||||||||||| || || |||||||| ||  ||||||||| ||||| |||||||||    
T  23403873 tatactatatatgaaggggatagagattttgggctaaactttttatagttcaaattatacccttaaacaaattttcc 23403949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 30309973 - 30309917
Alignment:
Q  4 ggcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    |||||| |||||||||   |||||||||||| |||||||||||||||||||||||||    
T  30309973 ggcacgccttgtgctaacgagactcttgttgttaatataattccatttttgattgtt 30309917  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 19113953 - 19113904
Alignment:
Q  11 cttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    ||||||||| | | |||||||||| |||||||||||||||||||||||||    
T  19113953 cttgtgctaatgacactcttgttgttaatataattccatttttgattgtt 19113904  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 53450967 - 53450918
Alignment:
Q  136 attttggtctgaattttttataatttcaattatacctttaaataaatttt 185  Q
    ||||||| ||||||| |||||||||||||||||||||||||  |||||||    
T  53450967 attttggactgaattctttataatttcaattatacctttaaccaaatttt 53450918  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 3083210 - 3083270
Alignment:
Q  116 tatatatgaaagggagagagattttggtctgaattttttataatttcaattatacctttaa 176  Q
    |||||| ||||| || |||||||||||   |||||||||||||||||||||||||| ||||    
T  3083210 tatatacgaaagagatagagattttggaaagaattttttataatttcaattatacccttaa 3083270  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 34410123 - 34410161
Alignment:
Q  138 tttggtctgaattttttataatttcaattatacctttaa 176  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  34410123 tttgggctgaattctttataatttcaattatacctttaa 34410161  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 38004330 - 38004384
Alignment:
Q  133 gagattttggtctgaattttttataatttcaattatacctttaaataaattttcc 187  Q
    |||||||||| ||||||||||| | |||||||||||||| || || |||||||||    
T  38004330 gagattttgggctgaattttttgttatttcaattatacccttgaacaaattttcc 38004384  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 5105842 - 5105805
Alignment:
Q  149 ttttttataatttcaattatacctttaaataaattttc 186  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  5105842 ttttttattatttcaattatacccttaaataaattttc 5105805  T

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Target: scaffold0108 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 10449 - 10394
Alignment:
Q  5 gcacgtcttgtgctattaagactcttgttggtaatataattccatttttgattgtt 60  Q
    ||||||||||||||| | |||||||||||| |||||||||||||||||||||||||    
T  10449 gcacgtcttgtgctaatgagactcttgttgttaatataattccatttttgattgtt 10394  T

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