View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_540 (Length: 210)
Name: NF6864A_low_540
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_540 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 34575870 - 34575708
Alignment:
| Q |
29 |
atatatatgttactgaatgtcaaaacttctctattttcccaataacatgtgtgctctttgaacatctgttag-attttctatggggatgcgcaaatgaat |
127 |
Q |
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| T |
34575870 |
atatatatgttactgaatgtcaaaacttctctattttcc-attaacatgtgtgctcttagaacatctgttagtattttctatggggatgcgcaaatgaat |
34575772 |
T |
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| Q |
128 |
taaatataagaatgttaacacaaaatttaatatttaaactttgtttggtaatttggtaagaact |
191 |
Q |
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| T |
34575771 |
taaatataagaatgttaacacaaaatttaatatttaaactttgtttggtaatttggtaaaaact |
34575708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 34576657 - 34576495
Alignment:
| Q |
29 |
atatatatgttactgaatgtcaaaacttctctattttcccaataacatgtgtgctctttgaacatctgttag-attttctatggggatgcgcaaatgaat |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34576657 |
atatatatgttactgaatgtcaaaacttctctattttcg-attaacatgtgtgctcttagaacatctgttagtattttctatggggatgcgcaaatgaat |
34576559 |
T |
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| Q |
128 |
taaatataagaatgttaacacaaaatttaatatttaaactttgtttggtaatttggtaagaact |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34576558 |
taaatataagaatgttaacacaaaatttaatatttaaactttgtttggtaatttggtaaaaact |
34576495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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