View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6864A_low_541 (Length: 209)
Name: NF6864A_low_541
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_541 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 94; Significance: 4e-46; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 24621328 - 24621223
Alignment:
| Q |
8 |
attgtaacctgcagaacaacaaggagtcacactctccctgtgtaagatatatggaaataagctagaatggtgcaaaacaaccatgc-tttgttgaatgta |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24621328 |
attgtaacctgcagaacaacaaggagtcacactctccttgtgtaagatatatggaaataagctagaatggtgcaaaacaaccatgcttttgttgaatgta |
24621229 |
T |
|
| Q |
107 |
gattac |
112 |
Q |
| |
|
|||||| |
|
|
| T |
24621228 |
gattac |
24621223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 24621112 - 24621063
Alignment:
| Q |
151 |
tttgattataaaaatacgcctttgattgtcttggcttgtgacatattctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24621112 |
tttgattataaaaatacgcctttgattgtcttggcttgtgacattttctt |
24621063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 47569680 - 47569747
Alignment:
| Q |
46 |
tgtgtaagatatatggaaataagctagaatggtgcaaaacaaccatgc-tttgttgaatgtagattac |
112 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
47569680 |
tgtgtaagatatatgaaaataagctagggtggtgcaaaagaaccatgcttttgtggaatgtagattac |
47569747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 47569859 - 47569908
Alignment:
| Q |
151 |
tttgattataaaaatacgcctttgattgtcttggcttgtgacatattctt |
200 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
47569859 |
tttgattatataaatacgcctatgattgtcttggcttgttacattttctt |
47569908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 8331955 - 8332023
Alignment:
| Q |
20 |
agaacaacaaggagtcacactctccctgtgtaagatatatggaaataagctagaatggtgcaaaacaaccat |
91 |
Q |
| |
|
||||||| |||||| |||||||| | ||||||||||||| ||||||||||| ||||||||||| |||||| |
|
|
| T |
8331955 |
agaacaataaggaggcacactct---tatgtaagatatatgaaaataagctaggatggtgcaaaagaaccat |
8332023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 16375735 - 16375802
Alignment:
| Q |
46 |
tgtgtaagatatatggaaataagctagaatggtgcaaaacaaccatgc-tttgttgaatgtagattac |
112 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||| ||||| |||||||| ||||| | ||||||||||| |
|
|
| T |
16375735 |
tgtgtaagatatatggaaatacgttaggatggtacaaaagaaccatgcttttgtggtatgtagattac |
16375802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University