View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_543 (Length: 209)

Name: NF6864A_low_543
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_543
NF6864A_low_543
[»] chr7 (28 HSPs)
chr7 (26-195)||(14627990-14628159)
chr7 (55-185)||(2843348-2843477)
chr7 (50-183)||(26583536-26583668)
chr7 (50-185)||(26492187-26492321)
chr7 (50-185)||(46821836-46821970)
chr7 (46-185)||(20116401-20116539)
chr7 (50-185)||(21266214-21266348)
chr7 (59-185)||(42311111-42311236)
chr7 (65-185)||(32684522-32684641)
chr7 (50-185)||(1448950-1449084)
chr7 (50-185)||(22927991-22928125)
chr7 (59-185)||(35496296-35496421)
chr7 (73-185)||(46338898-46339009)
chr7 (73-184)||(36143711-36143821)
chr7 (59-185)||(23085353-23085477)
chr7 (65-185)||(1485377-1485496)
chr7 (135-181)||(31235917-31235963)
chr7 (100-181)||(23425496-23425576)
chr7 (66-185)||(433813-433929)
chr7 (139-185)||(35667352-35667398)
chr7 (135-185)||(48207808-48207858)
chr7 (93-194)||(42067172-42067272)
chr7 (147-190)||(5546277-5546320)
chr7 (65-181)||(6001857-6001973)
chr7 (138-185)||(20083240-20083287)
chr7 (139-185)||(42408272-42408318)
chr7 (159-195)||(7640893-7640929)
chr7 (139-183)||(45199154-45199198)
[»] chr6 (24 HSPs)
chr6 (46-185)||(12652758-12652896)
chr6 (46-185)||(8496783-8496921)
chr6 (50-185)||(25064057-25064191)
chr6 (55-185)||(23947438-23947567)
chr6 (54-185)||(4984699-4984828)
chr6 (50-185)||(33109656-33109790)
chr6 (79-185)||(33740699-33740804)
chr6 (60-185)||(8028239-8028363)
chr6 (50-183)||(4468389-4468513)
chr6 (66-177)||(10228518-10228627)
chr6 (46-185)||(17237405-17237543)
chr6 (59-185)||(17334607-17334731)
chr6 (46-185)||(7876166-7876297)
chr6 (141-185)||(8196528-8196572)
chr6 (139-185)||(7881224-7881270)
chr6 (139-181)||(8266545-8266587)
chr6 (139-185)||(16419068-16419114)
chr6 (66-185)||(4088297-4088416)
chr6 (65-185)||(12165678-12165797)
chr6 (135-181)||(34489154-34489202)
chr6 (146-185)||(9508837-9508876)
chr6 (147-190)||(13436705-13436748)
chr6 (139-185)||(17346671-17346717)
chr6 (141-181)||(33543744-33543784)
[»] chr3 (33 HSPs)
chr3 (46-183)||(4178380-4178516)
chr3 (46-185)||(4172382-4172520)
chr3 (50-180)||(25162256-25162385)
chr3 (89-185)||(35499322-35499418)
chr3 (46-185)||(46934458-46934596)
chr3 (55-185)||(25631648-25631777)
chr3 (46-187)||(12115909-12116049)
chr3 (46-185)||(36905937-36906075)
chr3 (55-185)||(38855158-38855286)
chr3 (55-185)||(44907520-44907649)
chr3 (56-185)||(39917517-39917645)
chr3 (50-185)||(32607287-32607421)
chr3 (91-185)||(14464368-14464461)
chr3 (70-185)||(2342332-2342445)
chr3 (81-185)||(38440698-38440801)
chr3 (65-181)||(37169068-37169180)
chr3 (50-183)||(50611540-50611672)
chr3 (89-185)||(49552344-49552439)
chr3 (135-185)||(3850576-3850626)
chr3 (136-181)||(46178481-46178526)
chr3 (46-171)||(51202384-51202508)
chr3 (137-181)||(22802927-22802971)
chr3 (139-185)||(17237710-17237756)
chr3 (139-184)||(21488019-21488064)
chr3 (68-181)||(36735277-36735389)
chr3 (139-185)||(29503370-29503416)
chr3 (148-185)||(31793996-31794033)
chr3 (68-121)||(47980852-47980905)
chr3 (68-121)||(47990139-47990192)
chr3 (68-121)||(47999426-47999479)
chr3 (68-121)||(48008713-48008766)
chr3 (65-121)||(25849655-25849711)
chr3 (147-183)||(42719436-42719472)
[»] chr1 (37 HSPs)
chr1 (46-185)||(19716018-19716155)
chr1 (65-185)||(18569431-18569550)
chr1 (65-190)||(30818461-30818585)
chr1 (46-185)||(35584742-35584880)
chr1 (50-184)||(40646514-40646647)
chr1 (46-190)||(33291534-33291678)
chr1 (73-185)||(50272261-50272372)
chr1 (46-185)||(51871687-51871824)
chr1 (59-185)||(51868766-51868891)
chr1 (66-185)||(38520654-38520773)
chr1 (50-185)||(5701083-5701217)
chr1 (50-177)||(7342548-7342674)
chr1 (66-185)||(25406405-25406523)
chr1 (65-184)||(40881135-40881253)
chr1 (46-184)||(5324679-5324816)
chr1 (79-185)||(25728080-25728185)
chr1 (55-185)||(50148203-50148332)
chr1 (59-185)||(50166220-50166344)
chr1 (101-185)||(3871285-3871369)
chr1 (73-185)||(30878924-30879035)
chr1 (135-181)||(9919299-9919345)
chr1 (139-185)||(28035053-28035099)
chr1 (100-190)||(45805925-45806014)
chr1 (100-185)||(7997663-7997747)
chr1 (100-185)||(20266178-20266262)
chr1 (100-185)||(27872615-27872699)
chr1 (65-185)||(45426183-45426303)
chr1 (89-185)||(9172353-9172448)
chr1 (89-185)||(9180335-9180430)
chr1 (66-185)||(19723176-19723293)
chr1 (138-181)||(39987303-39987346)
chr1 (74-184)||(7312220-7312329)
chr1 (139-185)||(14545434-14545480)
chr1 (65-185)||(11453776-11453896)
chr1 (146-185)||(34519054-34519093)
chr1 (144-195)||(18649993-18650044)
chr1 (139-183)||(5155985-5156029)
[»] chr8 (27 HSPs)
chr8 (46-185)||(9498723-9498860)
chr8 (50-185)||(9619479-9619613)
chr8 (46-181)||(43890250-43890384)
chr8 (65-181)||(33342281-33342396)
chr8 (49-180)||(42448154-42448284)
chr8 (56-185)||(17949082-17949210)
chr8 (50-185)||(11725511-11725645)
chr8 (65-185)||(44577880-44577999)
chr8 (50-185)||(44100053-44100187)
chr8 (55-185)||(14907045-14907174)
chr8 (73-185)||(4808816-4808927)
chr8 (46-185)||(32724610-32724749)
chr8 (46-185)||(35580282-35580421)
chr8 (89-190)||(9072585-9072685)
chr8 (65-181)||(28239676-28239792)
chr8 (69-185)||(2655717-2655832)
chr8 (55-185)||(11196726-11196853)
chr8 (50-185)||(33895911-33896044)
chr8 (139-181)||(16794210-16794252)
chr8 (69-195)||(34611652-34611777)
chr8 (46-174)||(29777054-29777181)
chr8 (55-185)||(15597287-15597417)
chr8 (94-185)||(19876085-19876175)
chr8 (53-181)||(18733852-18733980)
chr8 (65-193)||(27747225-27747352)
chr8 (153-185)||(33298787-33298819)
chr8 (141-190)||(25241718-25241767)
[»] chr5 (33 HSPs)
chr5 (46-185)||(30371545-30371683)
chr5 (46-185)||(27266981-27267119)
chr5 (46-185)||(19281065-19281203)
chr5 (46-185)||(34881531-34881668)
chr5 (67-185)||(18677587-18677704)
chr5 (50-185)||(7241607-7241741)
chr5 (50-185)||(7246783-7246917)
chr5 (55-185)||(7150456-7150585)
chr5 (55-185)||(21060402-21060531)
chr5 (88-185)||(10649316-10649412)
chr5 (55-185)||(42579707-42579839)
chr5 (67-185)||(28235427-28235544)
chr5 (46-185)||(36344610-36344748)
chr5 (135-185)||(2057959-2058009)
chr5 (55-185)||(26578079-26578208)
chr5 (50-190)||(7887053-7887192)
chr5 (65-181)||(19259938-19260050)
chr5 (139-185)||(43261938-43261984)
chr5 (48-185)||(3271529-3271663)
chr5 (139-183)||(781302-781346)
chr5 (137-185)||(16981201-16981249)
chr5 (145-185)||(20257815-20257855)
chr5 (139-181)||(11767720-11767762)
chr5 (136-181)||(15570819-15570864)
chr5 (93-185)||(35475457-35475548)
chr5 (135-185)||(14211110-14211160)
chr5 (139-185)||(27576470-27576516)
chr5 (139-185)||(42886392-42886438)
chr5 (139-184)||(1582243-1582288)
chr5 (139-184)||(1602527-1602572)
chr5 (148-185)||(30298130-30298167)
chr5 (56-121)||(35676259-35676324)
chr5 (141-185)||(43148645-43148689)
[»] chr4 (47 HSPs)
chr4 (46-180)||(4643686-4643821)
chr4 (65-185)||(38706831-38706950)
chr4 (50-185)||(43444227-43444361)
chr4 (46-185)||(9528999-9529137)
chr4 (55-185)||(1531745-1531875)
chr4 (46-181)||(9283741-9283875)
chr4 (50-185)||(10389874-10390008)
chr4 (50-185)||(20569086-20569220)
chr4 (66-181)||(35965100-35965214)
chr4 (65-185)||(34024557-34024676)
chr4 (50-185)||(9645670-9645804)
chr4 (56-185)||(21089992-21090121)
chr4 (56-185)||(2115709-2115837)
chr4 (68-185)||(47416736-47416852)
chr4 (50-185)||(25273709-25273848)
chr4 (59-185)||(31381792-31381917)
chr4 (50-185)||(50766630-50766766)
chr4 (50-177)||(6972644-6972769)
chr4 (46-185)||(43154142-43154279)
chr4 (50-185)||(53616772-53616906)
chr4 (65-181)||(5333656-5333768)
chr4 (65-181)||(10359671-10359787)
chr4 (45-164)||(867986-868104)
chr4 (50-185)||(37188713-37188847)
chr4 (63-185)||(51317832-51317954)
chr4 (139-185)||(8009480-8009526)
chr4 (46-116)||(44947233-44947303)
chr4 (50-185)||(27593959-27594091)
chr4 (137-185)||(56194519-56194567)
chr4 (143-186)||(14183729-14183772)
chr4 (136-185)||(49680456-49680505)
chr4 (137-181)||(18139038-18139082)
chr4 (137-181)||(49126251-49126295)
chr4 (56-116)||(50179611-50179671)
chr4 (143-190)||(1008221-1008268)
chr4 (139-181)||(5333584-5333626)
chr4 (135-181)||(12265373-12265419)
chr4 (147-181)||(23100617-23100651)
chr4 (65-185)||(35261037-35261160)
chr4 (46-109)||(29965505-29965568)
chr4 (139-185)||(32952867-32952913)
chr4 (144-185)||(21405440-21405481)
chr4 (148-185)||(29965565-29965602)
chr4 (141-185)||(23329094-23329138)
chr4 (149-185)||(46991251-46991287)
chr4 (141-185)||(49072878-49072922)
chr4 (141-181)||(52098044-52098084)
[»] chr2 (34 HSPs)
chr2 (56-185)||(27249272-27249400)
chr2 (50-185)||(30420503-30420637)
chr2 (46-185)||(36233827-36233965)
chr2 (55-185)||(6173463-6173592)
chr2 (55-185)||(9986466-9986597)
chr2 (46-185)||(2808591-2808729)
chr2 (59-185)||(8971747-8971874)
chr2 (50-185)||(21570529-21570663)
chr2 (50-185)||(34598813-34598948)
chr2 (70-195)||(459385-459509)
chr2 (59-185)||(45128040-45128164)
chr2 (48-185)||(40626148-40626284)
chr2 (55-185)||(41712886-41713015)
chr2 (73-185)||(3725030-3725141)
chr2 (137-185)||(31581840-31581888)
chr2 (118-185)||(26025530-26025597)
chr2 (50-165)||(33229129-33229243)
chr2 (135-185)||(4192749-4192799)
chr2 (56-185)||(3270349-3270477)
chr2 (50-177)||(25086862-25086986)
chr2 (59-177)||(20047211-20047327)
chr2 (135-185)||(27477065-27477115)
chr2 (139-185)||(32680703-32680749)
chr2 (50-185)||(40660052-40660183)
chr2 (74-185)||(7015831-7015941)
chr2 (65-116)||(31581891-31581942)
chr2 (135-185)||(42949624-42949675)
chr2 (139-185)||(39641980-39642026)
chr2 (135-175)||(41430938-41430978)
chr2 (139-181)||(18694961-18695004)
chr2 (139-185)||(8805781-8805827)
chr2 (135-185)||(32913152-32913202)
chr2 (148-185)||(22421659-22421696)
chr2 (141-185)||(27949339-27949383)
[»] scaffold0003 (1 HSPs)
scaffold0003 (56-185)||(361917-362043)
[»] scaffold0311 (1 HSPs)
scaffold0311 (65-185)||(8557-8676)
[»] scaffold0495 (1 HSPs)
scaffold0495 (66-177)||(5237-5346)
[»] scaffold0426 (1 HSPs)
scaffold0426 (50-185)||(6161-6294)
[»] scaffold0146 (1 HSPs)
scaffold0146 (139-185)||(16443-16489)
[»] scaffold0608 (1 HSPs)
scaffold0608 (56-116)||(70-130)
[»] scaffold0014 (1 HSPs)
scaffold0014 (143-185)||(201492-201534)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 14628159 - 14627990
Alignment:
Q  26 actatgaatggtgttgttgaaagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatc 125  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14628159 actatgaatggtgttgttgaaagtcggccctagttttcgctctctaagttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttacc 14628060  T
Q  126 ggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattttcacaaaaatatagg 195  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  14628059 ggaaattacctcctcttcatctttttttctctaattcaatctaaataagtgattttcacataaatatagg 14627990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 2843477 - 2843348
Alignment:
Q  55 ctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctc 154  Q
    ||||||||| ||||||||||||| ||||||| | |||||||||||||||||||||||||||| | || | | ||||  | ||||||||||||||||||||    
T  2843477 ctagttttctctctctaggttttctcttacaatttcttcattgaagggtggttttgggtcaattcttgacctgaaaaca-cccctcttcatctttttctc 2843379  T
Q  155 tctaattcaatctaaataagtgattttcaca 185  Q
    | || ||||||||||||||||||||||||||    
T  2843378 tttatttcaatctaaataagtgattttcaca 2843348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 50 - 183
Target Start/End: Original strand, 26583536 - 26583668
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||||| || |||||||||||||||||||| |||||||||| |||||||||| |||||| | || | | ||||| | |||||||||||||||    
T  26583536 cggccctagttttctctttctaggttttttcttacagtttcttcattgaggggtggtttttggtcaattcttgacctgaaatca-cccctcttcatcttt 26583634  T
Q  150 ttctctctaattcaatctaaataagtgattttca 183  Q
    || |||||| ||||||||||||||||||||||||    
T  26583635 ttatctctatttcaatctaaataagtgattttca 26583668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 26492187 - 26492321
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||||  |||||||| |||| ||||||||| |||||||||| ||||||||||||||||| | || | | ||||| ||||| |||||||||||    
T  26492187 cggccctagttttatctctctagattttgtcttacagtttcttcattgaggggtggttttgggtcaattcttgacctgaaataacccc-tcttcatcttt 26492285  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||| |||||| |||||||||||||||||||    
T  26492286 ttctctctatttcaatttaaataagtgattttcaca 26492321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 46821836 - 46821970
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||||| ||||||||||||| ||||| | | | |||||||| ||||||||||||||||| | || | | ||||| ||||| |||||||||||    
T  46821836 cggccctagttttctctctctaggttttctcttataattttttcattgaggggtggttttgggtcaattcttgacctgaaatcacccc-tcttcatcttt 46821934  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| || ||||||||||||||||||||||||||    
T  46821935 ttctctttatttcaatctaaataagtgattttcaca 46821970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 20116401 - 20116539
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||||||||| ||||||| ||||| ||||  ||| |||||| ||| |||| |||||||||||| |||| | | ||||| ||||  |||||||    
T  20116401 aagtcggccctagttttctctctctatgttttctcttcaagtttcttcaatgaggggtagttttgggtcaatttttgacctgaaatcaccct-tcttcat 20116499  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  20116500 ctttttctatctatttcaatctaaataagtgattttcaca 20116539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 21266214 - 21266348
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||||| |||| || |||||||||| |||| |||| ||||| ||||||||||||||||| | || |   ||||| ||| | |||||||||||    
T  21266214 cggccctagttttctctctttaagttttttcttccagtttctttattgaggggtggttttgggtcaattattgacatgaaatcacctc-tcttcatcttt 21266312  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| || ||||||||||||||||||||||||||    
T  21266313 ttctctttatttcaatctaaataagtgattttcaca 21266348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 42311111 - 42311236
Alignment:
Q  59 ttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctcta 158  Q
    ||||| ||||||||||||| ||||| ||| |||||| ||| ||||||||||||||||| | || | | ||||| |  ||||||||||| |||||||||||    
T  42311111 ttttctctctctaggttttctcttagagtttcttcactgaggggtggttttgggtcaattcttgacctgaaatca-tccctcttcatcattttctctcta 42311209  T
Q  159 attcaatctaaataagtgattttcaca 185  Q
     ||||||||||||||||||| ||||||    
T  42311210 tttcaatctaaataagtgatattcaca 42311236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 32684522 - 32684641
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaa 164  Q
    ||||||||||||| |||||| || |||||||||| ||||||||||||||||| | || | | ||||| ||    |||||||| ||||||||||| |||||    
T  32684522 ctctctaggttttctcttacggtttcttcattgaggggtggttttgggtcaattcttgacctgaaatcacatg-tcttcatcgttttctctctatttcaa 32684620  T
Q  165 tctaaataagtgattttcaca 185  Q
    |||||||||||||||||||||    
T  32684621 tctaaataagtgattttcaca 32684641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 1449084 - 1448950
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||||| |||||||||||||||||| |||  ||||  |||| ||||||||||||||||| | || | | ||||| |||    |||||||| |    
T  1449084 cggccctagttttctctctctaggttttttcttccagattctttgttgaggggtggttttgggtcaattcttgacctgaaataaccaaa-cttcatctct 1448986  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  1448985 ttctctctatttcaatctaaataagtgattttcaca 1448950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 22928125 - 22927991
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||| ||||| ||||||||||||| |||| | || ||||||||   ||||||||||||||||| | || | | ||||| ||||| | |||||||||    
T  22928125 cggccctaattttctctctctaggttttctcttcccgtttcttcattagggggtggttttgggtcaattcttgacctgaaatcacccctt-ttcatcttt 22928027  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||| |||||||||||||||||| |||||||    
T  22928026 ttctctctatttcaatctaaataagtgactttcaca 22927991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 35496421 - 35496296
Alignment:
Q  59 ttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctcta 158  Q
    ||||| |||| |||||||| |||||| || |||||||||| ||||||||||||||||| | || | |  |||| |||   ||||||||||||||||||||    
T  35496421 ttttctctctttaggttttctcttactgtttcttcattgaggggtggttttgggtcaattcttgacctaaaatcaccaa-tcttcatctttttctctcta 35496323  T
Q  159 attcaatctaaataagtgattttcaca 185  Q
     |||||||||| |||||||||||||||    
T  35496322 tttcaatctaattaagtgattttcaca 35496296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 46338898 - 46339009
Alignment:
Q  73 gttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaata 172  Q
    ||||| ||||||| | |||||||||| |||| |||||||||||| | || | | ||||||| ||| ||||||||||||||||| || |||||| ||||||    
T  46338898 gttttctcttacaatttcttcattgaggggtagttttgggtcaattcttgacctgaaattatccc-tcttcatctttttctctttatttcaatgtaaata 46338996  T
Q  173 agtgattttcaca 185  Q
    |||||||||||||    
T  46338997 agtgattttcaca 46339009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 184
Target Start/End: Original strand, 36143711 - 36143821
Alignment:
Q  73 gttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaata 172  Q
    |||||||||| | || | |||||||| |||| ||||||| ||||||||| |   ||||||| ||  ||||||||||||||||||||||||||||||||||    
T  36143711 gttttttctttccgttttttcattgaggggttgttttggatcaaattttaacgtgaaattatcca-tcttcatctttttctctctaattcaatctaaata 36143809  T
Q  173 agtgattttcac 184  Q
    |||| |||||||    
T  36143810 agtgtttttcac 36143821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 23085353 - 23085477
Alignment:
Q  59 ttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctcta 158  Q
    ||||| ||||||||||||| |||| | || |||||||||  ||||||||||||||||| | || |   ||||| ||||||||||||||||||||| ||||    
T  23085353 ttttctctctctaggttttctcttcc-gtttcttcattgg-gggtggttttgggtcaattattgacttgaaatcaccccctcttcatctttttctttcta 23085450  T
Q  159 attcaatctaaataagtgattttcaca 185  Q
     |||||||||||||| ||| |||||||    
T  23085451 tttcaatctaaataattgactttcaca 23085477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 1485496 - 1485377
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaa 164  Q
    ||||||||||||| |||| | || |||||||||  |||||||||||||| || | || | |  |||| ||||  |||||||||||||||||||| |||||    
T  1485496 ctctctaggttttctcttcccgtttcttcattggggggtggttttgggttaattcttgacctaaaatcacccg-tcttcatctttttctctctatttcaa 1485398  T
Q  165 tctaaataagtgattttcaca 185  Q
    ||||||||||||| |||||||    
T  1485397 tctaaataagtgactttcaca 1485377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 31235963 - 31235917
Alignment:
Q  135 cccctcttcatctttttctctctaattcaatctaaataagtgatttt 181  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  31235963 cccctcttcatctttttctctctatttcaatctaaataagtgatttt 31235917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 23425576 - 23425496
Alignment:
Q  100 gggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgatttt 181  Q
    ||||||||||||||||| | || | | ||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||    
T  23425576 gggtggttttgggtcaattcttgacctgaaatcacccc-tcttcatctttttctctatatttcaatctaaataagtgatttt 23425496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 185
Target Start/End: Complemental strand, 433929 - 433813
Alignment:
Q  66 tctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaat 165  Q
    |||||||||||| ||||   || |||||||||  ||||||||||||||||| |||| | | ||||| | ||| | |||||||||||||||||| ||||||    
T  433929 tctctaggttttctcttctggtttcttcattg--gggtggttttgggtcaatttttgacctgaaatcatccctt-ttcatctttttctctctatttcaat 433833  T
Q  166 ctaaataagtgattttcaca 185  Q
    |||||||| ||| |||||||    
T  433832 ctaaataaatgactttcaca 433813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 35667398 - 35667352
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  35667398 tcttcatatttttctctctatttcaatctaaataagtgattttcaca 35667352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 48207808 - 48207858
Alignment:
Q  135 cccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  48207808 cccctcttcatctttttctcaatatttcaatctaaataagtgattttcaca 48207858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 42067272 - 42067172
Alignment:
Q  93 cattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattttcacaaaaatat 192  Q
    |||||||||||| ||||||||||| | || | | ||||| ||| | |||||||||| || ||| || |||||||||||||||||||||||||| | ||||    
T  42067272 cattgaagggtgattttgggtcaattcttgacctgaaatcacctc-tcttcatcttgttatctatatttcaatctaaataagtgattttcacatagatat 42067174  T
Q  193 ag 194  Q
    ||    
T  42067173 ag 42067172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 5546277 - 5546320
Alignment:
Q  147 tttttctctctaattcaatctaaataagtgattttcacaaaaat 190  Q
    |||||||||||| |||||||||||||||||||||||||| ||||    
T  5546277 tttttctctctatttcaatctaaataagtgattttcacataaat 5546320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 6001857 - 6001973
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaaggg-tggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattca 163  Q
    |||| |||||||| |||| || | |||| ||||||||| || |||||| |||| |||| | | ||||| ||||  |||||||||||||||| ||| || |    
T  6001857 ctctttaggttttctcttccattttctttattgaaggggtgattttggatcaatttttgacctgaaatcaccca-tcttcatctttttctccctatttta 6001955  T
Q  164 atctaaataagtgatttt 181  Q
    ||||||||||||||||||    
T  6001956 atctaaataagtgatttt 6001973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 20083240 - 20083287
Alignment:
Q  138 ctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||||| |||| |||||||||||||||  |||||||||    
T  20083240 ctcttcatctttttctttctatttcaatctaaataagcaattttcaca 20083287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 42408272 - 42408318
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||||||| || |||||||||||||| || ||||||||    
T  42408272 tcttcatctttttctctttatttcaatctaaataattgtttttcaca 42408318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 7640929 - 7640893
Alignment:
Q  159 attcaatctaaataagtgattttcacaaaaatatagg 195  Q
    ||||||||||||||||||||||||||| | |||||||    
T  7640929 attcaatctaaataagtgattttcacatagatatagg 7640893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 45199198 - 45199154
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttca 183  Q
    ||||||||||||||||| || || ||| |||||||||||||||||    
T  45199198 tcttcatctttttctctatattttaatttaaataagtgattttca 45199154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 12652758 - 12652896
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||||||||| ||||||||||||| ||| ||||| |||||||||| ||||||||||||||||| | || | | ||||| | |||||||||||    
T  12652758 aagtcggccctagttttctctctctaggttttctctcacagtttcttcattgaggggtggttttgggtcaattcttgacctgaaatca-cccctcttcat 12652856  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  12652857 ctttttctctctatttcaatctaaataagtgattttcaca 12652896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 8496783 - 8496921
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||  ||||||||| ||||||||||||| ||||||| | |||||||||| ||||||||||| ||||| | || | | ||||| ||||| |||||||    
T  8496783 aagtcggtcctagttttctctctctaggttttctcttacaatttcttcattgaggggtggttttgagtcaattcttgacctgaaatcacccc-tcttcat 8496881  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  8496882 ctttttctctttatttcaatctaaataagtgattttcaca 8496921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 25064057 - 25064191
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||||| ||||||||||||| ||||||| | |||||||||| ||||||||||||||||| | || | | ||||| | || ||||||||||||    
T  25064057 cggccctagttttctctctctaggttttctcttacaatttcttcattgaggggtggttttgggtcaattcttgacctgaaatca-cctctcttcatcttt 25064155  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| || ||||||||||||||||||||||||||    
T  25064156 ttctctttatttcaatctaaataagtgattttcaca 25064191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 23947567 - 23947438
Alignment:
Q  55 ctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctc 154  Q
    ||||||||| ||||||||||||||||||  ||| |||||||||| ||||||||||||||||| | || | | ||||| | ||| |||||||| |||||||    
T  23947567 ctagttttctctctctaggttttttcttctagtttcttcattgaggggtggttttgggtcaattcttgacctgaaatca-cccatcttcatcgttttctc 23947469  T
Q  155 tctaattcaatctaaataagtgattttcaca 185  Q
    |||| ||||||||||||||||||||||||||    
T  23947468 tctatttcaatctaaataagtgattttcaca 23947438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 185
Target Start/End: Complemental strand, 4984828 - 4984699
Alignment:
Q  54 tctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttct 153  Q
    |||||||||  |||| |||||||| ||||||||| ||| |||||| ||||||||||||||||| | || | | ||||| || |  |||||||||||| ||    
T  4984828 tctagttttatctctttaggttttctcttacagtttctccattgaggggtggttttgggtcaattcttgacctgaaatcactca-tcttcatctttt-ct 4984731  T
Q  154 ctctaattcaatctaaataagtgattttcaca 185  Q
    ||||| ||||||||||||||||||||||||||    
T  4984730 ctctatttcaatctaaataagtgattttcaca 4984699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 33109656 - 33109790
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||||| || | |||||||| |||| |||| |||||||||| ||||||||||||||||| |||| | |  ||||   ||  |||||||||||    
T  33109656 cggccctagttttctctttttaggttttctcttccagtttcttcattgacgggtggttttgggtcaatttttgacctaaaatcgtcca-tcttcatcttt 33109754  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| || ||||||||||||||||||||||||||    
T  33109755 ttctctttatttcaatctaaataagtgattttcaca 33109790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 33740804 - 33740699
Alignment:
Q  79 tcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgat 178  Q
    |||||| || |||||||||| |||||||||| |||||| | || | |  |||| ||||| |||||||||||||||||||| |||||||||||||||||||    
T  33740804 tcttactgtttcttcattgaggggtggtttttggtcaattcttgacctaaaatcacccc-tcttcatctttttctctctatttcaatctaaataagtgat 33740706  T
Q  179 tttcaca 185  Q
    |||||||    
T  33740705 tttcaca 33740699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 185
Target Start/End: Complemental strand, 8028363 - 8028239
Alignment:
Q  60 tttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaa 159  Q
    |||| |||| |||||||| |  |||||| ||||||||||  |||| ||||||||||| | || ||| | ||| |||||  ||||||||||||||||||      
T  8028363 tttctctctttaggttttctagtacagtttcttcattgagaggtgattttgggtcaattattgatctggaatcacccca-cttcatctttttctctctgt 8028265  T
Q  160 ttcaatctaaataagtgattttcaca 185  Q
    ||||||||||||||||||||||||||    
T  8028264 ttcaatctaaataagtgattttcaca 8028239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 183
Target Start/End: Original strand, 4468389 - 4468513
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||||||||||||||||||||||||||||||||||||| ||||||         | ||||||||||| | || |   ||| | | ||||||||||||||     
T  4468389 cggctctagttttcactctctaggttttttcttacagtttcttca--------cgattttgggtcaattcttgacatgaagtca-cccctcttcatcttg 4468479  T
Q  150 ttctctctaattcaatctaaataagtgattttca 183  Q
    ||||||||| ||||||||||||||||||||||||    
T  4468480 ttctctctatttcaatctaaataagtgattttca 4468513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 10228518 - 10228627
Alignment:
Q  66 tctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaat 165  Q
    |||||||||||| |||| | || |||||||||  ||||||||||||||||| | || | | ||||| ||||| ||||||||||| |||||||| ||||||    
T  10228518 tctctaggttttctcttcccgtttcttcattgg-gggtggttttgggtcaattcttgacctgaaatcacccc-tcttcatctttctctctctacttcaat 10228615  T
Q  166 ctaaataagtga 177  Q
    ||||||||||||    
T  10228616 ctaaataagtga 10228627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 17237543 - 17237405
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||||||||| ||||||| ||||| | ||  ||  | | |||||| ||||||||||||||||| | || |   ||||| | |||||||||||    
T  17237543 aagtcggccctagttttctctctctatgttttcttttctagattttccattgaggggtggttttgggtcaattcttgacatgaaatca-cccctcttcat 17237445  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||| || |||||||||||||||| |||||||||    
T  17237444 ctttttctctatatttcaatctaaataagttattttcaca 17237405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 17334607 - 17334731
Alignment:
Q  59 ttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctcta 158  Q
    ||||| |||||||| |||| ||||||| | |||||||||| |||||||||||| || | | || ||| ||||| |||   ||||||||||||||| | ||    
T  17334607 ttttctctctctagattttctcttacaatttcttcattga-gggtggttttggatcgattcttgatctgaaatcaccaa-tcttcatctttttctgttta 17334704  T
Q  159 attcaatctaaataagtgattttcaca 185  Q
     ||||||||||||||||||||||||||    
T  17334705 tttcaatctaaataagtgattttcaca 17334731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 7876297 - 7876166
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    ||||| |||||||||||| |||||||||||||        || |||||||||| |||||||||||| |||| | || | |  |||| ||||  |||||||    
T  7876297 aagtcagctctagttttctctctctaggttttc-------gtttcttcattgaggggtggttttggatcaattattgacctaaaatcaccca-tcttcat 7876206  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  7876205 ctttttctctttatttcaatctaaataagtgattttcaca 7876166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 8196572 - 8196528
Alignment:
Q  141 ttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  8196572 ttcatctttttctctctatttcaatctaaataagtgattttcaca 8196528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 7881270 - 7881224
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||    
T  7881270 tcttcatctttttctctttatttcaatctaaataagtgattttcaca 7881224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 8266545 - 8266587
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgatttt 181  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  8266545 tcttcatctttttctctctacttcaatctaaataagtgatttt 8266587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 16419068 - 16419114
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||    
T  16419068 tcttcatctttttctctctatttcaatctaaataagtgactttcaca 16419114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 185
Target Start/End: Original strand, 4088297 - 4088416
Alignment:
Q  66 tctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttca-tctttttctctctaattcaa 164  Q
    |||||||||||| | ||||||  |||| ||||| ||||||||||||||||| | || | | ||||| | ||| |||||| | ||||| |||||| | |||    
T  4088297 tctctaggttttcttttacaggttctttattgaggggtggttttgggtcaattcttgacctgaaatca-cccatcttcattttttttatctctattacaa 4088395  T
Q  165 tctaaataagtgattttcaca 185  Q
    |||||||||||||||||||||    
T  4088396 tctaaataagtgattttcaca 4088416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 12165678 - 12165797
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaa 164  Q
    |||||| |||||| |||| |||| |||||||||| | ||  ||||||||||| | || | | ||||| | | ||||||||||||||| |  ||| |||||    
T  12165678 ctctctcggttttctcttccagtttcttcattgaggagttattttgggtcaattattgacctgaaatca-ctcctcttcatctttttatgcctatttcaa 12165776  T
Q  165 tctaaataagtgattttcaca 185  Q
    |||||||||||||||||||||    
T  12165777 tctaaataagtgattttcaca 12165797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 34489154 - 34489202
Alignment:
Q  135 cccctcttcatctttttctctctaattca--atctaaataagtgatttt 181  Q
    |||||||||||||||||||||||||||||  || |||||||||||||||    
T  34489154 cccctcttcatctttttctctctaattcaatatataaataagtgatttt 34489202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 9508876 - 9508837
Alignment:
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  9508876 ctttttctttttaattcaatctaaataagtgattttcaca 9508837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 13436705 - 13436748
Alignment:
Q  147 tttttctctctaattcaatctaaataagtgattttcacaaaaat 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||    
T  13436705 tttttctctctatttcaatttaaataagtgattttcacataaat 13436748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 17346717 - 17346671
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||||| ||||||| ||| ||||||| |||||||||||    
T  17346717 tcttcatctttttctttctaatttaatataaataaatgattttcaca 17346671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 33543784 - 33543744
Alignment:
Q  141 ttcatctttttctctctaattcaatctaaataagtgatttt 181  Q
    ||||||||||||||| || |||||||||||||||| |||||    
T  33543784 ttcatctttttctctatatttcaatctaaataagtaatttt 33543744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 4178380 - 4178516
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||||||||| |||||||||||||||||||| || |||||||||| ||||||||||||||||| | || | |  |||| | ||| |||||||    
T  4178380 aagtcggccctagttttctctctctaggttttttcttactgtttcttcattgaggggtggttttgggtcaattcttgacctaaaatca-cccatcttcat 4178478  T
Q  146 ctttttctctctaattcaatctaaataagtgattttca 183  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  4178479 ctttttctctctatttcaatctaaataagtgattttca 4178516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 4172382 - 4172520
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||||||||| |||||||| ||||||||||| || |||||||||| ||||||||||||||| |||| ||| |  ||| |   || |||||||    
T  4172382 aagtcggccctagttttctctctctagattttttcttactgtttcttcattgaggggtggttttgggtc-aattcttaacataaaatcatccatcttcat 4172480  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  4172481 ctttttctctctatttcaatctaaataagtgattttcaca 4172520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 50 - 180
Target Start/End: Original strand, 25162256 - 25162385
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||||||||||||| ||||||||||||| ||||||||| |||||| ||| ||||||||||| ||||| | || ||  ||||| | ||| |||||||||||    
T  25162256 cggctctagttttctctctctaggttttctcttacagtttcttcactgaggggtggttttgtgtcaattcttgatttgaaatca-cccatcttcatcttt 25162354  T
Q  150 ttctctctaattcaatctaaataagtgattt 180  Q
    ||||||||| |||||||||||||||||||||    
T  25162355 ttctctctatttcaatctaaataagtgattt 25162385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 35499418 - 35499322
Alignment:
Q  89 tcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||| |||||||||| |||||| |||||| | ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  35499418 tcttcattgaggggtggtttttggtcaattttttacctgaaatcaccccctcttcatctttttctctttatttcaatctaaataagtgattttcaca 35499322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 46934458 - 46934596
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||| ||||| ||||||||||||| ||||  | | |||||||||| |||||||||| |||||| |||| | | ||||| ||||| |||||||    
T  46934458 aagtcggccctaattttctctctctaggttttctcttctactttcttcattgaggggtggtttttggtcaatttttgacctgaaatcacccc-tcttcat 46934556  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  46934557 ctttctctctctatttcaatctaaataagtgattttcaca 46934596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 25631777 - 25631648
Alignment:
Q  55 ctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctc 154  Q
    ||||||||| ||||||||||||| ||||||  | |||||||||| ||||||||||||||||| |||| | |  |||| |  |||||| ||||||||||||    
T  25631777 ctagttttctctctctaggttttctcttactatttcttcattgaggggtggttttgggtcaatttttgacctaaaatca-tccctctccatctttttctc 25631679  T
Q  155 tctaattcaatctaaataagtgattttcaca 185  Q
    |||| ||||||||||||||||||||||||||    
T  25631678 tctatttcaatctaaataagtgattttcaca 25631648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 12115909 - 12116049
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||||||||||||| ||||||||||||| | ||||| | |||||||||| ||||||||||| ||||| | || | | ||||| |  | ||||||||    
T  12115909 aagtcggctctagttttctctctctaggttttcttttacaatttcttcattgaggggtggttttgagtcaattcttgacctgaaatca-tctctcttcat 12116007  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcacaaa 187  Q
    ||||| |||| || ||||||||||||||||||||||||||||    
T  12116008 cttttcctctttatttcaatctaaataagtgattttcacaaa 12116049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 36905937 - 36906075
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||| ||||| ||||||||||||| ||||||| | |||||||||| || |||||||||||||| | || | | ||||| | ||| |||||||    
T  36905937 aagtcggccctaattttctctctctaggttttctcttacaatttcttcattgatggatggttttgggtcaattcttgacctgaaatca-cccttcttcat 36906035  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||| || |||||| |||||||||||||||||||    
T  36906036 ctttttctctttatttcaatataaataagtgattttcaca 36906075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 38855286 - 38855158
Alignment:
Q  55 ctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctc 154  Q
    ||||||||| ||||||||||||| ||||||  | |||||||||| ||||||||||||||||  || ||  | |||| |  ||||||||||||||||||||    
T  38855286 ctagttttctctctctaggttttctcttactatttcttcattgaggggtggttttgggtca--ttcttgaccgaaaatcacccctcttcatctttttctc 38855189  T
Q  155 tctaattcaatctaaataagtgattttcaca 185  Q
    ||||  |||||||||||||||||||||||||    
T  38855188 tctatatcaatctaaataagtgattttcaca 38855158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 44907649 - 44907520
Alignment:
Q  55 ctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctc 154  Q
    ||||||||| ||||||||||||| || |||| | ||||| |||| ||||||||||||||||| | || | | ||||| ||||| ||||||||||||||||    
T  44907649 ctagttttctctctctaggttttctcctacaatttcttctttgaggggtggttttgggtcaattcttgacctgaaatcacccc-tcttcatctttttctc 44907551  T
Q  155 tctaattcaatctaaataagtgattttcaca 185  Q
    | || ||||||||||| ||||||||||||||    
T  44907550 tttatttcaatctaaacaagtgattttcaca 44907520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 39917645 - 39917517
Alignment:
Q  56 tagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctct 155  Q
    |||||||| |||||||||||||  |||||||| |||||| ||| | ||||||||||||||| | || | | ||||| | ||  ||||||| |||||||||    
T  39917645 tagttttctctctctaggttttcccttacagtttcttcactgaggagtggttttgggtcaattcttgacctgaaatcatcca-tcttcatatttttctct 39917547  T
Q  156 ctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||||||||||||||||||||    
T  39917546 ctaattcaatctaaataagtgattttcaca 39917517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 32607287 - 32607421
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaaggg-tggttttgggtcaaatttttatcggaaattaccccctcttcatctt 148  Q
    |||| ||||||||| |||||||| |||| ||||||| | |||||||||| ||| |||||||||||||| | || | | |||||   |||||||||||| |    
T  32607287 cggccctagttttctctctctagattttctcttacaatttcttcattgagggggtggttttgggtcaattcttgacctgaaat--acccctcttcatcat 32607384  T
Q  149 tttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||| || ||||||||||||||||||||||||||    
T  32607385 tttctctttatttcaatctaaataagtgattttcaca 32607421  T

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Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 185
Target Start/End: Original strand, 14464368 - 14464461
Alignment:
Q  91 ttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||||||||||||||| | || | | ||||| ||||| | ||||||||||||||| || ||||||||||||||||||||||||||    
T  14464368 ttcattgaagggtggttttgggtcaattcttgacctgaaatcacccc-tattcatctttttctctttatttcaatctaaataagtgattttcaca 14464461  T

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Target: chr3; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 2342332 - 2342445
Alignment:
Q  70 taggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaa 169  Q
    |||||||| ||||||||| ||||| |||| ||||||||||||||||| | |  | | |||   ||||  |||||||||||||||||||| ||||||||||    
T  2342332 taggttttctcttacagtttcttcgttgaggggtggttttgggtcaattctaaacctgaatcaaccc--tcttcatctttttctctctatttcaatctaa 2342429  T
Q  170 ataagtgattttcaca 185  Q
    ||||||||||||||||    
T  2342430 ataagtgattttcaca 2342445  T

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Target: chr3; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 81 - 185
Target Start/End: Complemental strand, 38440801 - 38440698
Alignment:
Q  81 ttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattt 180  Q
    ||||||| ||||||||||| |||||||||| ||||| | || | | ||||| | | |||||| ||||||||||||||| |||||||||||||||||||||    
T  38440801 ttacagtttcttcattgaatggtggttttgagtcaattcttgacctgaaatca-ctcctctttatctttttctctctatttcaatctaaataagtgattt 38440703  T
Q  181 tcaca 185  Q
    |||||    
T  38440702 tcaca 38440698  T

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Target: chr3; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 37169068 - 37169180
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaa 164  Q
    ||||||||||||||||    ||| |||||||||| ||||| |||||| |||| |||||| | ||||| ||| | |||||| |||||||||||||||||||    
T  37169068 ctctctaggttttttca---agtttcttcattgaggggtgattttggatcaattttttacctgaaatcacctc-tcttcacctttttctctctaattcaa 37169163  T
Q  165 tctaaataagtgatttt 181  Q
    | |||||||||||||||    
T  37169164 tataaataagtgatttt 37169180  T

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Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 183
Target Start/End: Complemental strand, 50611672 - 50611540
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||||||||||||  |||| || ||||| |||||  || ||||||||||  | |||||||||||||| | || | |  |||| | |||||||||||||||    
T  50611672 cggctctagttttttctctttaagttttctcttattgtttcttcattgagagatggttttgggtcaattattgacctaaaatca-cccctcttcatcttt 50611574  T
Q  150 ttctctctaattcaatctaaataagtgattttca 183  Q
    |||||| || ||||||||||||||||||||||||    
T  50611573 ttctctatatttcaatctaaataagtgattttca 50611540  T

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Target: chr3; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 49552439 - 49552344
Alignment:
Q  89 tcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||| ||||||||||||||||| | || | | ||||| ||||| |||||||| |||| |||||| |||||||||||||||||| |||||||    
T  49552439 tcttcattgatgggtggttttgggtcaattcttgacctgaaatcacccc-tcttcatcattttttctctatttcaatctaaataagtgaatttcaca 49552344  T

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Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 3850626 - 3850576
Alignment:
Q  135 cccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  3850626 cccctcttcatctttttctctctatttcaatctaaataagtgactttcaca 3850576  T

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Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 46178481 - 46178526
Alignment:
Q  136 ccctcttcatctttttctctctaattcaatctaaataagtgatttt 181  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  46178481 ccctcttcatctttttctctctaattcaatctaaataagtgctttt 46178526  T

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Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 51202508 - 51202384
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    ||||||||  |||||||  |||| |||||||| ||||||||| |||| ||||| ||||| ||||||||||| | || | | ||||| | ||| |||||||    
T  51202508 aagtcggccttagttttttctctttaggttttctcttacagtttctttattgaggggtgattttgggtcaattcttgacctgaaatca-cccatcttcat 51202410  T
Q  146 ctttttctctctaattcaatctaaat 171  Q
     |||||||||||| ||||||||||||    
T  51202409 atttttctctctatttcaatctaaat 51202384  T

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Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 22802927 - 22802971
Alignment:
Q  137 cctcttcatctttttctctctaattcaatctaaataagtgatttt 181  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  22802927 cctcttcatctttttctctctatttcaatctaaataagtgatttt 22802971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 17237710 - 17237756
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  17237710 tcttcatctgtttctctctatttcaatctaaataagtgattttcaca 17237756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 21488019 - 21488064
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcac 184  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||    
T  21488019 tcttcatctttttctctccatttcaatctaaataagtgactttcac 21488064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 36735389 - 36735277
Alignment:
Q  68 tctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatct 167  Q
    |||| ||||| ||||  ||| ||||||||||  ||||||||| |||||| |||||| | ||||| | ||| ||||||| ||| ||||| || |||||| |    
T  36735389 tctaagttttctcttctagtttcttcattgagaggtggtttttggtcaattttttacctgaaatcatccc-tcttcatttttctctctatatttcaattt 36735291  T
Q  168 aaataagtgatttt 181  Q
    ||||||||||||||    
T  36735290 aaataagtgatttt 36735277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 29503370 - 29503416
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||| ||||||||| || |||||||||||||| |||||||||||    
T  29503370 tcttcatatttttctctatatttcaatctaaataattgattttcaca 29503416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 31793996 - 31794033
Alignment:
Q  148 ttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  31793996 ttttttctctatttcaatctaaataagtgattttcaca 31794033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 47980905 - 47980852
Alignment:
Q  68 tctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttt 121  Q
    |||||||||| |||| |||| ||||||||||  |||||||||||||||| ||||    
T  47980905 tctaggttttctcttgcagtttcttcattgagtggtggttttgggtcaattttt 47980852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 47990192 - 47990139
Alignment:
Q  68 tctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttt 121  Q
    |||||||||| |||| |||| ||||||||||  |||||||||||||||| ||||    
T  47990192 tctaggttttctcttgcagtttcttcattgagtggtggttttgggtcaattttt 47990139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 47999479 - 47999426
Alignment:
Q  68 tctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttt 121  Q
    |||||||||| |||| |||| ||||||||||  |||||||||||||||| ||||    
T  47999479 tctaggttttctcttgcagtttcttcattgagtggtggttttgggtcaattttt 47999426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 48008766 - 48008713
Alignment:
Q  68 tctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttt 121  Q
    |||||||||| |||| |||| ||||||||||  |||||||||||||||| ||||    
T  48008766 tctaggttttctcttgcagtttcttcattgagtggtggttttgggtcaattttt 48008713  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 25849655 - 25849711
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttt 121  Q
    |||||||||||||||||| |||  |||| ||||| ||||||||||| ||||| ||||    
T  25849655 ctctctaggttttttcttccagcttcttaattgaggggtggttttgagtcaattttt 25849711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 42719436 - 42719472
Alignment:
Q  147 tttttctctctaattcaatctaaataagtgattttca 183  Q
    |||||||||||| |||||| |||||||||||||||||    
T  42719436 tttttctctctatttcaatttaaataagtgattttca 42719472  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 19716155 - 19716018
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||||||||| |||| |||||||||||||||| | ||||||||||  |||||||||||||||| | || ||| |||||  | ||||||||||    
T  19716155 aagtcggccctagttttctctctttaggttttttcttacaatttcttcattgagaggtggttttgggtcaattcttgatctgaaat--caccctcttcat 19716058  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  19716057 ctttttctctttatttcaatctaaataagtgattttcaca 19716018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 18569550 - 18569431
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaa 164  Q
    ||||||||||||| |||| |||| |||||||||| ||||||||||||||||| |||| |   ||||| |||   |||||||||||||||||||| |||||    
T  18569550 ctctctaggttttctcttccagtttcttcattgaggggtggttttgggtcaatttttgacaagaaatcacctg-tcttcatctttttctctctatttcaa 18569452  T
Q  165 tctaaataagtgattttcaca 185  Q
    |||||||||||||||||||||    
T  18569451 tctaaataagtgattttcaca 18569431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 65 - 190
Target Start/End: Complemental strand, 30818585 - 30818461
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaa 164  Q
    ||||||| ||||| | ||||||| |||||||||| |||| |||||||||||| | || | | ||||| ||||  |||||||||||||||||||| |||||    
T  30818585 ctctctaagttttcttttacagtttcttcattgaggggtagttttgggtcaattattgacctgaaatcaccca-tcttcatctttttctctctatttcaa 30818487  T
Q  165 tctaaataagtgattttcacaaaaat 190  Q
    ||||||||||||||||||||| ||||    
T  30818486 tctaaataagtgattttcacataaat 30818461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 35584880 - 35584742
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    ||||| || |||||||||  |||||||||||| ||||||| | |||||||||| ||||| ||||||||||| | || | | ||||| || |  |||||||    
T  35584880 aagtccgccctagttttctttctctaggttttctcttacaatttcttcattgaggggtgattttgggtcaattcttaacctgaaatcactca-tcttcat 35584782  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  35584781 ctttttctctttatttcaatctaaataagtgattttcaca 35584742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 50 - 184
Target Start/End: Original strand, 40646514 - 40646647
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||||| ||||||||||||| ||||||| | |||||||||| ||||||||||||||||| | || | |  |||| | | | |||||||||||    
T  40646514 cggccctagttttctctctctaggttttctcttacaatttcttcattgaggggtggttttgggtcaattcttgacctaaaatca-ctcatcttcatcttt 40646612  T
Q  150 ttctctctaattcaatctaaataagtgattttcac 184  Q
    |||| | || |||||||||||||||||||||||||    
T  40646613 ttctatttatttcaatctaaataagtgattttcac 40646647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 46 - 190
Target Start/End: Complemental strand, 33291678 - 33291534
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttca- 144  Q
    |||||||| |||||||||  ||||||| |||||||||| ||| | |||||||| ||||||||||||||||| | || | | ||||| | ||||||||||     
T  33291678 aagtcggccctagttttctttctctagattttttcttatagttttttcattgaggggtggttttgggtcaattcttgacctgaaatca-cccctcttcat 33291580  T
Q  145 tctttttctctctaattcaatctaaataagtgattttcacaaaaat 190  Q
    | ||||||| |||| |||||| ||||||||||||||||||| ||||    
T  33291579 tttttttctttctatttcaatataaataagtgattttcacataaat 33291534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 50272372 - 50272261
Alignment:
Q  73 gttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaata 172  Q
    ||||| ||||||| | |||||||||||||||||||||||||||| | || | | ||||| ||||| | ||||||||||||||| || |||||||||||||    
T  50272372 gttttctcttacaatttcttcattgaagggtggttttgggtcaattcttgacctgaaatcacccc-tattcatctttttctctttatttcaatctaaata 50272274  T
Q  173 agtgattttcaca 185  Q
    ||| |||||||||    
T  50272273 agtaattttcaca 50272261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 51871687 - 51871824
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||| ||||| ||||||||||||| ||||   || |||||||||  ||||||||||||||||| | || | |  |||| | |||||||||||    
T  51871687 aagtcggccctaattttctctctctaggttttctcttctcgtttcttcattg-ggggtggttttgggtcaattcttgacctaaaatca-cccctcttcat 51871784  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  51871785 ctttttctctctatttcaatctaaataagtgactttcaca 51871824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 51868891 - 51868766
Alignment:
Q  59 ttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctcta 158  Q
    ||||| |||| |||||||| |||| | || |||||||||  |||||||||||||| || | || | | ||||| ||||| ||||||||||||||||||||    
T  51868891 ttttctctctttaggttttctcttcccgtttcttcattggggggtggttttgggttaattcttgacctgaaatcacccc-tcttcatctttttctctcta 51868793  T
Q  159 attcaatctaaataagtgattttcaca 185  Q
     |||||||||||||||||| |||||||    
T  51868792 tttcaatctaaataagtgactttcaca 51868766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 66 - 185
Target Start/End: Complemental strand, 38520773 - 38520654
Alignment:
Q  66 tctctaggttttttcttacagtgtcttcattgaaggg-tggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaa 164  Q
    |||||||||||| |||| |||| |||||||| | ||| ||||||||| |||| |||||| | ||||| || |  |||||||||||||||||||| ||| |    
T  38520773 tctctaggttttctctttcagtttcttcattaagggggtggttttggatcaattttttacctgaaatcactca-tcttcatctttttctctctatttcga 38520675  T
Q  165 tctaaataagtgattttcaca 185  Q
    |||||||||||||||||||||    
T  38520674 tctaaataagtgattttcaca 38520654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 5701083 - 5701217
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||||| ||||||| ||||| ||||||| | |||| ||||| |||||  ||||||||||   || | | ||||| ||||| |||||||||||    
T  5701083 cggccctagttttctctctctaagttttctcttacaatttctttattgaggggtgactttgggtcaatacttgacctgaaatcacccc-tcttcatcttt 5701181  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| || |||||| |||||||||||||||||||    
T  5701182 ttctctttatttcaatttaaataagtgattttcaca 5701217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 7342548 - 7342674
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||| ||||| ||||||||||||| |||| | || |||||||||  ||||||||||||||||| |||| | | ||||| | ||||||||||| |||    
T  7342548 cggccctaattttctctctctaggttttctcttcccgtttcttcattggggggtggttttgggtcaatttttgacctgaaatca-cccctcttcatattt 7342646  T
Q  150 ttctctctaattcaatctaaataagtga 177  Q
    || | |||| ||||||||||||||||||    
T  7342647 ttttatctatttcaatctaaataagtga 7342674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 185
Target Start/End: Complemental strand, 25406523 - 25406405
Alignment:
Q  66 tctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaat 165  Q
    |||||| |||||||||| | || |||||||||  ||||| ||||||||||| | || | | ||||| | | |||||||||||||||||||||| ||||||    
T  25406523 tctctaagttttttcttcccgtttcttcattggggggtgattttgggtcaattcttgacctgaaatca-cacctcttcatctttttctctctatttcaat 25406425  T
Q  166 ctaaataagtgattttcaca 185  Q
    |||||||||||| |||||||    
T  25406424 ctaaataagtgactttcaca 25406405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 184
Target Start/End: Complemental strand, 40881253 - 40881135
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaa 164  Q
    ||||||||||||| |||||| || |||||||||| || |||||||||||||| | || | |  |||| || |  |||||||||||||||||||| |||||    
T  40881253 ctctctaggttttctcttaccgtttcttcattgagggatggttttgggtcaattcttgacctaaaatcactca-tcttcatctttttctctctatttcaa 40881155  T
Q  165 tctaaataagtgattttcac 184  Q
    ||||||| ||||||||||||    
T  40881154 tctaaatgagtgattttcac 40881135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 5324816 - 5324679
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    ||||| || ||| ||||| |||||||| |||| ||||  ||| |||||||||| || || ||||||||||| | || | | | ||| ||| | |||||||    
T  5324816 aagtcagccctaattttctctctctagattttctcttcaagtttcttcattgagggatgattttgggtcaattcttgacctggaatcacctc-tcttcat 5324718  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcac 184  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  5324717 ctttttctctctatttcaatctaaataagtgattttcac 5324679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 25728185 - 25728080
Alignment:
Q  79 tcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgat 178  Q
    ||||||| | |||||| ||| ||||||||||||||||| | || | | ||||| | | ||||||||||||||||||| || |||||||||||||||||||    
T  25728185 tcttacaatttcttcaatgacgggtggttttgggtcaattcttgacctgaaatca-ctcctcttcatctttttctctttatttcaatctaaataagtgat 25728087  T
Q  179 tttcaca 185  Q
    |||||||    
T  25728086 tttcaca 25728080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 50148203 - 50148332
Alignment:
Q  55 ctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctc 154  Q
    ||||||||| |||||||| |||| ||||| | | |||||||||| ||||||||||||||||| | |  ||| ||||| |  || |||||||| |||||||    
T  50148203 ctagttttctctctctagattttctcttataatttcttcattgaggggtggttttgggtcaattctagatctgaaatca-tccatcttcatccttttctc 50148301  T
Q  155 tctaattcaatctaaataagtgattttcaca 185  Q
    | || || |||||||||||||||||||||||    
T  50148302 tttattttaatctaaataagtgattttcaca 50148332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 50166344 - 50166220
Alignment:
Q  59 ttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctcta 158  Q
    ||||| ||||||||||||| |||| | || |||||||||  ||||||||||||||||| | || | | |||||| |||| |||| |||||||||| ||||    
T  50166344 ttttctctctctaggttttctcttcccgtttcttcattgg-gggtggttttgggtcaattattgacctgaaattgcccc-tctttatctttttctatcta 50166247  T
Q  159 attcaatctaaataagtgattttcaca 185  Q
     |||||||||||||||||| |||||||    
T  50166246 tttcaatctaaataagtgaatttcaca 50166220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 3871285 - 3871369
Alignment:
Q  101 ggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||| || | || ||| ||||| ||||||| ||||||||| |||||| | ||||||||||||||||||||||||||    
T  3871285 ggtggttttgggttaattcttgatctgaaatcacccccttttcatctttctctctcaatttcaatctaaataagtgattttcaca 3871369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 30878924 - 30879035
Alignment:
Q  73 gttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaata 172  Q
    ||||| ||||||| | |||||||||| ||||||||||||||||| |||| | | || || | | | ||||||||||||||||| || || ||||||||||    
T  30878924 gttttctcttacaatttcttcattgaggggtggttttgggtcaatttttgacctgagatcatctc-tcttcatctttttctctttattttaatctaaata 30879022  T
Q  173 agtgattttcaca 185  Q
    |||||||||||||    
T  30879023 agtgattttcaca 30879035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 9919299 - 9919345
Alignment:
Q  135 cccctcttcatctttttctctctaattcaatctaaataagtgatttt 181  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  9919299 cccctcttcatctttttctctctatttcaatctaaataagtgatttt 9919345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 28035053 - 28035099
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  28035053 tcttcatctttttctctctatttcaatctaaataagtgattttcaca 28035099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 45806014 - 45805925
Alignment:
Q  100 gggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattttcacaaaaat 190  Q
    ||||||||||||||||| |||| ||| ||||| |||   ||||| |||||||||||||| |||||||||||||||||| ||||||| ||||    
T  45806014 gggtggttttgggtcaatttttgatctgaaatcacctt-tcttcctctttttctctctatttcaatctaaataagtgactttcacataaat 45805925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 7997663 - 7997747
Alignment:
Q  100 gggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||| || |||| ||| ||||| ||||  ||||||||||||||||| || |||||| |||||||||||||||||||    
T  7997663 gggtggttttgggttaatttttgatctgaaatcaccct-tcttcatctttttctctttatttcaatataaataagtgattttcaca 7997747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 20266178 - 20266262
Alignment:
Q  100 gggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||||||| | || |||  |||| ||||  ||||||||||||||||| || ||||||||||||||||||||||||||    
T  20266178 gggtggttttgggtcaattcttgatctaaaatcaccca-tcttcatctttttctctttatttcaatctaaataagtgattttcaca 20266262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 27872615 - 27872699
Alignment:
Q  100 gggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||||||| |||| |   ||||| ||||  |||||||||||||| ||||| ||||||||||||||||||||||||||    
T  27872615 gggtggttttgggtcaatttttgacatgaaatcaccca-tcttcatctttttcgctctatttcaatctaaataagtgattttcaca 27872699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 45426303 - 45426183
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaaggg-tggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattca 163  Q
    ||||||||||||| | || |||| |||||||||| ||| |||||||||||||| | || ||  ||||| |||   | |||||||||||||||||| || |    
T  45426303 ctctctaggttttcttttccagtttcttcattgagggggtggttttgggtcaattcttgatttgaaatcacctatt-ttcatctttttctctctatttaa 45426205  T
Q  164 atctaaataagtgattttcaca 185  Q
    ||||||||||||||||||||||    
T  45426204 atctaaataagtgattttcaca 45426183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 9172353 - 9172448
Alignment:
Q  89 tcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||  ||||||||||||||||| | || | | ||||| ||||| ||||||| ||||| |||||| |||||||||||||||||| |||||||    
T  9172353 tcttcattggggggtggttttgggtcaattcttgacctgaaatcacccc-tcttcatatttttttctctatttcaatctaaataagtgactttcaca 9172448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 9180335 - 9180430
Alignment:
Q  89 tcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||  ||||||||||||||||| | || | | ||||| ||||| ||||||| ||||| |||||| |||||||||||||||||| |||||||    
T  9180335 tcttcattggggggtggttttgggtcaattcttgacctgaaatcacccc-tcttcatatttttttctctatttcaatctaaataagtgactttcaca 9180430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 185
Target Start/End: Original strand, 19723176 - 19723293
Alignment:
Q  66 tctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat-ctttttctctctaattcaa 164  Q
    |||||||||||| ||||| ||| ||||||||| |||||||||||||||||| | || |   ||||| | || ||||||||  ||||||||||| ||||||    
T  19723176 tctctaggttttctcttatagtttcttcattg-agggtggttttgggtcaattattgacttgaaatca-cctctcttcatattttttctctct-attcaa 19723272  T
Q  165 tctaaataagtgattttcaca 185  Q
    |||||||||||||||||||||    
T  19723273 tctaaataagtgattttcaca 19723293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 39987303 - 39987346
Alignment:
Q  138 ctcttcatctttttctctctaattcaatctaaataagtgatttt 181  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  39987303 ctcttcatctttttctctctgattcaatctaaataagtgatttt 39987346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 184
Target Start/End: Complemental strand, 7312329 - 7312220
Alignment:
Q  74 ttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataa 173  Q
    |||||| || |||| |||||||||| |||| |||||||||||| |||| | |  |||||| |  ||||||||||||||||||||| |||||  |||||||    
T  7312329 tttttttttccagtttcttcattgaggggtagttttgggtcaatttttgacctaaaatta-cttctcttcatctttttctctctatttcaaattaaataa 7312231  T
Q  174 gtgattttcac 184  Q
     ||||||||||    
T  7312230 atgattttcac 7312220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 14545434 - 14545480
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||    
T  14545434 tcttcatctttttctctatatttcaatctaaataagtgattttcaca 14545480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 11453776 - 11453896
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctct--aattc 162  Q
    ||||||||||||| |||| |||| |||||||||| || ||||||  |||||| |||| |   ||||| || |  |||||||||||||||||||  | |||    
T  11453776 ctctctaggttttctctttcagtttcttcattgagggatggtttctggtcaatttttgacttgaaatcactc--tcttcatctttttctctctctatttc 11453873  T
Q  163 aatctaaataagtgattttcaca 185  Q
    |||||||||||||| ||||||||    
T  11453874 aatctaaataagtggttttcaca 11453896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 34519054 - 34519093
Alignment:
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  34519054 ctttttctctctatttcaatctaaataagtgattttcaca 34519093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 18650044 - 18649993
Alignment:
Q  144 atctttttctctctaattcaatctaaataagtgattttcacaaaaatatagg 195  Q
    ||||||| ||||||| ||| |||||||||||| ||||||||| |||||||||    
T  18650044 atcttttcctctctatttcgatctaaataagtaattttcacataaatatagg 18649993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 5155985 - 5156029
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttca 183  Q
    |||||||||| |||||||| ||| ||| |||||||||||||||||    
T  5155985 tcttcatcttcttctctctcatttaatgtaaataagtgattttca 5156029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 9498860 - 9498723
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||||||||| ||||||||||||| ||||||| | |||||||||| ||||||||||||||| |||| ||| | ||||| | |||||||||||    
T  9498860 aagtcggccctagttttctctctctaggttttctcttacaatttcttcattgaggggtggttttgggtc-aattcttacctgaaatca-cccctcttcat 9498763  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| ||| || ||||||||||||||||||||||||||    
T  9498762 ctttttatctttatttcaatctaaataagtgattttcaca 9498723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 9619613 - 9619479
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||||||||||||| |||||||| |||| ||||||| | |||||||||| ||||||||||||||||| | || | | ||||| ||||| |||||||||||    
T  9619613 cggctctagttttctctctctagattttctcttacaatttcttcattgaggggtggttttgggtcaattcttgacctgaaatcacccc-tcttcatcttt 9619515  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| || ||||||||||||||||||||||||||    
T  9619514 ttctctttatttcaatctaaataagtgattttcaca 9619479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 43890384 - 43890250
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||||||||| ||||||||||||| ||||||| | |||||||||| |||||||||||| |||  |||| | | ||||| ||||| |||||||    
T  43890384 aagtcggccctagttttctctctctaggttttctcttacaatttcttcattgaggggtggttttggatcattttttgacctgaaatcacccc-tcttcat 43890286  T
Q  146 ctttttctctctaattcaatctaaataagtgatttt 181  Q
    |||||||||| |||||||||||||||||||||||||    
T  43890285 ctttttctctttaattcaatctaaataagtgatttt 43890250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 33342281 - 33342396
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaa 164  Q
    ||||||||||||||||||  ||| |||||||||| ||||||||||||||||| |||| | | ||||| ||||| |||||||| |||| ||||||||||||    
T  33342281 ctctctaggttttttcttcgagtttcttcattgaggggtggttttgggtcaatttttaacctgaaatcacccc-tcttcatccttttttctctaattcaa 33342379  T
Q  165 tctaaataagtgatttt 181  Q
    |||||||||||||||||    
T  33342380 tctaaataagtgatttt 33342396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 49 - 180
Target Start/End: Complemental strand, 42448284 - 42448154
Alignment:
Q  49 tcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctt 148  Q
    ||||| ||||||||| ||||||||||||| ||||||||| |  ||||||| |||||||||||||| || | || | | ||||| ||||| ||||||||||    
T  42448284 tcggccctagttttctctctctaggttttgtcttacagttttgtcattgaggggtggttttgggttaattcttgacctgaaatcacccc-tcttcatctt 42448186  T
Q  149 tttctctctaattcaatctaaataagtgattt 180  Q
    |||||||||| |||||||||||||||||||||    
T  42448185 tttctctctatttcaatctaaataagtgattt 42448154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 17949082 - 17949210
Alignment:
Q  56 tagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctct 155  Q
    |||||||| ||||||||||| | ||||||||| |||||||||| ||||| ||||||||||| | || | | ||||| ||||| |||||| ||||||||||    
T  17949082 tagttttctctctctaggttgtctcttacagtttcttcattgatgggtgattttgggtcaattattgacctgaaatcacccc-tcttcacctttttctct 17949180  T
Q  156 ctaattcaatctaaataagtgattttcaca 185  Q
    ||| ||||||||||||||| ||||||||||    
T  17949181 ctatttcaatctaaataagcgattttcaca 17949210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 11725511 - 11725645
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||||| |||||||| |||| |||| |||| |||||||||| ||||||||||||||||| | || | | ||||| | ||||||||| |||||    
T  11725511 cggccctagttttctctctctagattttctctttcagtttcttcattgaggggtggttttgggtcaattcttgacctgaaatca-cccctcttcgtcttt 11725609  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| || ||||||||||||||||| ||||||||    
T  11725610 ttctctttatttcaatctaaataagtgtttttcaca 11725645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 44577880 - 44577999
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaa 164  Q
    ||||||||||||| |||||| || |||||||||| ||||||||||||||||| |||| | |  |||| | | |||||||||||||||||||||| |||||    
T  44577880 ctctctaggttttctcttactgtttcttcattgaggggtggttttgggtcaatttttgacctaaaatca-ctcctcttcatctttttctctctatttcaa 44577978  T
Q  165 tctaaataagtgattttcaca 185  Q
    ||||| |||||||||| ||||    
T  44577979 tctaactaagtgatttacaca 44577999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 44100187 - 44100053
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||||| ||||||||||||| |||| | || |||||||||| ||||||||||||||| | | || | |  |||| ||||| |||||||||||    
T  44100187 cggccctagttttctctctctaggttttctctttcggtttcttcattgaggggtggttttgggtcgattcttgacctaaaatcacccc-tcttcatcttt 44100089  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| || |||||||||||||||| |||||||||    
T  44100088 ttctctatatttcaatctaaataagttattttcaca 44100053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 14907174 - 14907045
Alignment:
Q  55 ctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctc 154  Q
    ||||||||| ||||||||||||| ||||||| | |||||||||| || || |||||| |||| | || | | ||||| ||||  ||||||||||||||||    
T  14907174 ctagttttctctctctaggttttctcttacaatttcttcattgagggatgattttggatcaattcttgacctgaaatcaccca-tcttcatctttttctc 14907076  T
Q  155 tctaattcaatctaaataagtgattttcaca 185  Q
    | || ||||||||||||||||||||||||||    
T  14907075 tttatttcaatctaaataagtgattttcaca 14907045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 4808816 - 4808927
Alignment:
Q  73 gttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaata 172  Q
    ||||| ||||||| | |||||||||| ||||||||||||||||| | || | | ||||||||||| ||||||||||||| ||| || |||||| ||||||    
T  4808816 gttttctcttacaatttcttcattgaggggtggttttgggtcaattcttgacctgaaattacccc-tcttcatctttttttctttatttcaatgtaaata 4808914  T
Q  173 agtgattttcaca 185  Q
    |||||||||||||    
T  4808915 agtgattttcaca 4808927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 32724749 - 32724610
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaaggg-tggttttgggtcaaattttt-atcggaaattaccccctcttc 143  Q
    |||||| | ||||||||| |||||| |||||| ||||||||| ||| |||||| ||| ||||||||||||||||| || | | ||||| ||  | |||||    
T  32724749 aagtcgaccctagttttctctctctgggttttctcttacagtttctccattgagggggtggttttgggtcaaattattgacctgaaatcacttc-tcttc 32724651  T
Q  144 atctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||| ||||||| ||||||||||||||||||||||||||    
T  32724650 atctttt-ctctctatttcaatctaaataagtgattttcaca 32724610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 35580282 - 35580421
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattga-agggtggttttgggtcaaatttttatcggaaattaccccctcttca 144  Q
    |||||||| ||| ||||  |||| ||||||||||||| || | |||||||||| |||||||||||||||||| |||| |    |||| || |  ||||||    
T  35580282 aagtcggccctaattttttctctttaggttttttcttccaatttcttcattgagagggtggttttgggtcaatttttgacataaaatcactca-tcttca 35580380  T
Q  145 tctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  35580381 tctttttctctctatttcaatttaaataagtgattttcaca 35580421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 9072585 - 9072685
Alignment:
Q  89 tcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattttcacaaaa 188  Q
    |||||||||  ||||||||||||||||| |||| |   ||||| ||||| |||||||||||||||||||| |||||| ||||||||||| ||||||| ||    
T  9072585 tcttcattggggggtggttttgggtcaatttttgacttgaaatcacccc-tcttcatctttttctctctatttcaatttaaataagtgactttcacataa 9072683  T
Q  189 at 190  Q
    ||    
T  9072684 at 9072685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 28239676 - 28239792
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaaggg-tggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattca 163  Q
    ||||||||||||| |||| || | |||||||||| ||| || ||||||||||| |||| | | ||||| ||| | |||||||||||||||||||| ||||    
T  28239676 ctctctaggttttctcttccattttcttcattgagggggtgattttgggtcaatttttgacctgaaatcacctc-tcttcatctttttctctctatttca 28239774  T
Q  164 atctaaataagtgatttt 181  Q
    ||||||||||||| ||||    
T  28239775 atctaaataagtgttttt 28239792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 69 - 185
Target Start/End: Original strand, 2655717 - 2655832
Alignment:
Q  69 ctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatcta 168  Q
    |||| |||| ||||||| | ||||||||||  |||||||||||||||| | || | | | ||| ||||  ||||||||||||||||| || |||||||||    
T  2655717 ctagtttttctcttacaatttcttcattgagcggtggttttgggtcaattcttgacctgcaatcaccca-tcttcatctttttctctttatttcaatcta 2655815  T
Q  169 aataagtgattttcaca 185  Q
    |||||||||||||||||    
T  2655816 aataagtgattttcaca 2655832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 11196726 - 11196853
Alignment:
Q  55 ctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctc 154  Q
    ||||||||| |||||||| |||| ||||  ||| ||||| |||| ||||||||||||||||| | || | | ||||| | ||  ||||||||||||||||    
T  11196726 ctagttttctctctctagtttttctcttctagtttcttcgttgaggggtggttttgggtcaattcttgacctgaaatcatcca-tcttcatctttttctc 11196824  T
Q  155 tctaattcaatctaaataagtgattttcaca 185  Q
    | |  ||||||||||||||||||||||||||    
T  11196825 tat--ttcaatctaaataagtgattttcaca 11196853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 33895911 - 33896044
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||| ||||| ||||||||||||| ||||   || |||||||||  ||||||||||||||||| | || |||  ||| |  |||||||||||||||    
T  33895911 cggccctaattttctctctctaggttttctcttcgcgtttcttcattg-ggggtggttttgggtcaattcttgatc-taaagtcacccctcttcatcttt 33896008  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||| || ||||||||||||||| |||||||    
T  33896009 ttctctctatttaaatctaaataagtgactttcaca 33896044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 16794210 - 16794252
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgatttt 181  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  16794210 tcttcatctttttctctctaattcaatctaaataagtgatttt 16794252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 195
Target Start/End: Original strand, 34611652 - 34611777
Alignment:
Q  69 ctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatcta 168  Q
    |||| |||| ||||||||| ||||||| || ||||||||||||||||| | || | | ||||| || |  ||||||| ||||||| |||| |||| ||||    
T  34611652 ctagtttttctcttacagtttcttcatcgaggggtggttttgggtcaattcttgacctgaaatcactca-tcttcatatttttctttctatttcagtcta 34611750  T
Q  169 aataagtgattttcacaaaaatatagg 195  Q
    ||||||||||||||||| |||| ||||    
T  34611751 aataagtgattttcacataaatctagg 34611777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 174
Target Start/End: Original strand, 29777054 - 29777181
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||| ||||| ||||||||||||| || | | || |||||||||  | ||||||||||||||| | || |   ||||| || || |||||||    
T  29777054 aagtcggccctaattttctctctctaggttttctcatcctgtttcttcattggtgagtggttttgggtcaattattgacatgaaatcactcc-tcttcat 29777152  T
Q  146 ctttttctctctaattcaatctaaataag 174  Q
    ||||||||||||| |||||||||||||||    
T  29777153 ctttttctctctatttcaatctaaataag 29777181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 15597417 - 15597287
Alignment:
Q  55 ctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctc 154  Q
    ||||||||  |||| |||||||| |||| |||| | || ||||| ||||||||||  ||||| |||| | | ||||| ||||| |||||||||||||||     
T  15597417 ctagttttttctctataggttttctcttccagtatttttattgaggggtggttttcagtcaatttttgacctgaaatcacccc-tcttcatctttttcta 15597319  T
Q  155 -tctaattcaatctaaataagtgattttcaca 185  Q
     || | ||||||||||||||||||||||||||    
T  15597318 gtccatttcaatctaaataagtgattttcaca 15597287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 19876085 - 19876175
Alignment:
Q  94 attgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||| ||||||||||||||||| | || | | |||||||| |  ||||||||||||||||  || ||||||||||||||||||||||||||    
T  19876085 attgaggggtggttttgggtcaattcttgacctgaaattactca-tcttcatctttttctcaatatttcaatctaaataagtgattttcaca 19876175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 18733852 - 18733980
Alignment:
Q  53 ctctagttttcactctctaggttttttcttacagtgtcttcattgaag-ggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttttt 151  Q
    ||||||||||| ||||||||||  | |||| || | |||| ||||| | ||||||| ||||||||||||||| | ||||| |     |||||||||||||    
T  18733852 ctctagttttctctctctaggtcctctcttccattttctttattgaggaggtggttgtgggtcaaatttttaaccgaaatcagtat-tcttcatcttttt 18733950  T
Q  152 ctctctaattcaatctaaataagtgatttt 181  Q
    ||||||| |||||| ||||||| |||||||    
T  18733951 ctctctatttcaatttaaataattgatttt 18733980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 27747352 - 27747225
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaa 164  Q
    ||||||||||||| |||| ||   |||||||| | |||| |||||||||||| |||| |   ||||| |||   ||||||||||||| |||| | |||||    
T  27747352 ctctctaggttttctcttccaacttcttcattaaggggtagttttgggtcaatttttgacttgaaatcaccat-tcttcatctttttatctccatttcaa 27747254  T
Q  165 tctaaataagtgattttcacaaaaatata 193  Q
    | ||||||||| ||||||||| |||||||    
T  27747253 tttaaataagtaattttcacataaatata 27747225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 33298787 - 33298819
Alignment:
Q  153 tctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||||||||||||||||||||||    
T  33298787 tctctaattcaatctaaataagtgattttcaca 33298819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 25241767 - 25241718
Alignment:
Q  141 ttcatctttttctctctaattcaatctaaataagtgattttcacaaaaat 190  Q
    ||||||||||||| |||| |||||||| ||||||||||| ||||| ||||    
T  25241767 ttcatctttttctttctatttcaatctcaataagtgattgtcacataaat 25241718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 6e-33; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 30371545 - 30371683
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||||||||| || |||||||||| ||||||| | |||||||||| |||||||||||||||||  ||| | | ||||| | |||||||||||    
T  30371545 aagtcggccctagttttctctatctaggttttctcttacaatttcttcattgaggggtggttttgggtcaatatttgacctgaaatca-cccctcttcat 30371643  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  30371644 ctttttctctttatttcaatctaaataagtgattttcaca 30371683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 27267119 - 27266981
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||||||||| ||||||||||||| |||| | || ||||||  |||||||||||||||||||| | || | | ||||| ||||| |||||||    
T  27267119 aagtcggccctagttttctctctctaggttttctcttcccgtttcttcaccgaagggtggttttgggtcaattcttgacctgaaatcacccc-tcttcat 27267021  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
     |||||||||||| ||||||||||||||||||||||||||    
T  27267020 atttttctctctatttcaatctaaataagtgattttcaca 27266981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 19281203 - 19281065
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||| ||||| ||||||||||||| || | | || |||||||||  |||||||||||||| || |||| | ||||||| ||||  |||||||    
T  19281203 aagtcggccctaattttctctctctaggttttctcatcccgtttcttcattggggggtggttttgggtaaatttttgaccggaaatcaccca-tcttcat 19281105  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  19281104 ctttttctctctatttcaatctaaataagtgactttcaca 19281065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 34881531 - 34881668
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||||||||| ||||| ||||||| ||||||||| ||| |||||| |||||||| |||||||| | || | | ||||| ||| | |||||||    
T  34881531 aagtcggccctagttttctctctccaggttttctcttacagtttctccattgaggggtggttctgggtcaattcttgacctgaaatcacctc-tcttcat 34881629  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  34881630 ctttt-ctctctatttcaatctaaataagtgattttcaca 34881668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 18677704 - 18677587
Alignment:
Q  67 ctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatc 166  Q
    ||||||||||| | |||| || |||||||||| ||||||||||||||||| | || ||| ||||| | ||| |||||||||||||||||||| || ||||    
T  18677704 ctctaggttttcttttaccgtttcttcattgaggggtggttttgggtcaattattgatctgaaatcatccc-tcttcatctttttctctctattttaatc 18677606  T
Q  167 taaataagtgattttcaca 185  Q
    |||||||||||||||||||    
T  18677605 taaataagtgattttcaca 18677587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 7241607 - 7241741
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||| ||||| ||||||||||||| |||| | || |||||||||  ||||||||||||||||| | || | | ||||  | |||||||||||||||    
T  7241607 cggccctaattttctctctctaggttttctcttcccgtttcttcattggggggtggttttgggtcaattcttaacctgaaacca-cccctcttcatcttt 7241705  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||| |||||||||||||||||| |||||||    
T  7241706 ttctctctatttcaatctaaataagtgactttcaca 7241741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 7246783 - 7246917
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||| ||||| ||||||||||||| |||| | || |||||||||  ||||||||||||||||| | || | | ||||  | |||||||||||||||    
T  7246783 cggccctaattttctctctctaggttttctcttcccgtttcttcattggggggtggttttgggtcaattcttaacctgaaacca-cccctcttcatcttt 7246881  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||| |||||||||||||||||| |||||||    
T  7246882 ttctctctatttcaatctaaataagtgactttcaca 7246917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 7150585 - 7150456
Alignment:
Q  55 ctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctc 154  Q
    ||||||||| ||||||||||||| |||| | || ||||||||   || ||||||||| | || |||| | | ||||| ||||| ||||||||||||||||    
T  7150585 ctagttttctctctctaggttttctcttcccgtttcttcattcggggatggttttggattaatttttgacctgaaatcacccc-tcttcatctttttctc 7150487  T
Q  155 tctaattcaatctaaataagtgattttcaca 185  Q
    |||| |||||||||||||||||| |||||||    
T  7150486 tctatttcaatctaaataagtgactttcaca 7150456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 21060531 - 21060402
Alignment:
Q  55 ctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctc 154  Q
    ||||||||| ||||||||||||| ||||  ||  | ||||| ||  |||||||||||||||| | || ||| ||||| ||| | ||||||||||||||||    
T  21060531 ctagttttctctctctaggttttctcttctagatttttcatcgagtggtggttttgggtcaattcttgatctgaaatcaccac-tcttcatctttttctc 21060433  T
Q  155 tctaattcaatctaaataagtgattttcaca 185  Q
    | || ||||||||||||||||||||||||||    
T  21060432 tatatttcaatctaaataagtgattttcaca 21060402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 10649316 - 10649412
Alignment:
Q  88 gtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||| ||||| ||||||||||| | || | | ||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||    
T  10649316 gtcttcattgaggggtgattttgggtcaattcttgacctgaaatcacccc-tcttcatctttttctctttatttcaatctaaataagtgattttcaca 10649412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 42579707 - 42579839
Alignment:
Q  55 ctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttca---tcttttt 151  Q
    ||||||||| ||||||||||||| ||||||||| ||| |||||| ||||||||||||||||| | || |   ||||| | ||||| ||||   | |||||    
T  42579707 ctagttttctctctctaggttttctcttacagtttctccattgaggggtggttttgggtcaattattgacatgaaatca-ccccttttcatttttttttt 42579805  T
Q  152 ctctctaattcaatctaaataagtgattttcaca 185  Q
    || |||| ||||||||||||||||||||||||||    
T  42579806 ctttctatttcaatctaaataagtgattttcaca 42579839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 28235427 - 28235544
Alignment:
Q  67 ctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatc 166  Q
    |||||| |||| |||| |||| |||| ||||| |||||||||||||||||   || | | ||||| | ||||||||||||||||||| |||| ||| |||    
T  28235427 ctctagattttctcttccagtttctttattgaggggtggttttgggtcaatcattgacctgaaatca-cccctcttcatctttttctttctatttcgatc 28235525  T
Q  167 taaataagtgattttcaca 185  Q
    |||||||||||||||||||    
T  28235526 taaataagtgattttcaca 28235544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 36344748 - 36344610
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||| ||||  |||||||| |||| |||| || | |||||||||| ||||||||||| ||| | | || | |  |||| ||||| |||||||    
T  36344748 aagtcggccctaattttttctctctagattttctcttccaatttcttcattgaggggtggttttgagtcgattcttgacctaaaatcacccc-tcttcat 36344650  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||| || |||||||||||||||| |||||||||    
T  36344649 ctttttctctatatttcaatctaaataagttattttcaca 36344610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 2058009 - 2057959
Alignment:
Q  135 cccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  2058009 cccctcttcatctttttctctttatttcaatctaaataagtgattttcaca 2057959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 26578079 - 26578208
Alignment:
Q  55 ctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctc 154  Q
    ||||||||| ||||| || |||| ||||||| | |||| ||||| || ||||||| |||||| | || | | ||||| || |  ||||||||||||||||    
T  26578079 ctagttttctctctccagattttctcttacaatttctttattgatggatggtttttggtcaattcttgacctgaaatcactca-tcttcatctttttctc 26578177  T
Q  155 tctaattcaatctaaataagtgattttcaca 185  Q
    | || ||||||||||||||||||||||||||    
T  26578178 tttatttcaatctaaataagtgattttcaca 26578208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 190
Target Start/End: Complemental strand, 7887192 - 7887053
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||||| || ||||  |||| |||| |||| ||||||| || ||||||||||||||| | | || | | ||||| | ||| ||||| |||||    
T  7887192 cggccctagttttctctttctaacttttctcttccagtttcttcatcgaggggtggttttgggtccattcttgacctgaaatcatccc-tcttcgtcttt 7887094  T
Q  150 ttctctctaattcaatctaaataagtgattttcacaaaaat 190  Q
    | ||||||| || ||||||||||||||||||||||| ||||    
T  7887093 tcctctctattttaatctaaataagtgattttcacataaat 7887053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 181
Target Start/End: Complemental strand, 19260050 - 19259938
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaa 164  Q
    ||||||||||||| |||||| || ||||| |||| ||||||||||||||||| | || | | ||||| |||||   |    ||||||||||||| |||||    
T  19260050 ctctctaggttttctcttacggtttcttcgttgaggggtggttttgggtcaattcttgacctgaaatcaccccaatt----ctttttctctctatttcaa 19259955  T
Q  165 tctaaataagtgatttt 181  Q
    |||||||||||||||||    
T  19259954 tctaaataagtgatttt 19259938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 43261984 - 43261938
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||    
T  43261984 tcttcatctttttatctctatttcaatctaaataagtgattttcaca 43261938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 3271663 - 3271529
Alignment:
Q  48 gtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatct 147  Q
    |||||| ||| ||||| |||||||  |||||||||| ||| |||||||||| ||||| |||| |||||| | || |   ||||| || || |||||||||    
T  3271663 gtcggccctaattttctctctctaaattttttcttatagtttcttcattga-gggtgattttaggtcaattcttgacatgaaatcactcc-tcttcatct 3271566  T
Q  148 ttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||| ||||||  ||||||||||||||||||||||||||    
T  3271565 ttt-ctctctgtttcaatctaaataagtgattttcaca 3271529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 781302 - 781346
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttca 183  Q
    ||||||||||||||||| || ||||||||||||||||||||||||    
T  781302 tcttcatctttttctctatatttcaatctaaataagtgattttca 781346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 16981201 - 16981249
Alignment:
Q  137 cctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||| |||||||||||| ||||||||||||||||||||| ||||    
T  16981201 cctcttcatatttttctctctatttcaatctaaataagtgatttacaca 16981249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 20257855 - 20257815
Alignment:
Q  145 tctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  20257855 tctttttctctctatttcaatctaaataagtgattttcaca 20257815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 11767720 - 11767762
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgatttt 181  Q
    ||||||||||||||||| || ||||||||||||||||||||||    
T  11767720 tcttcatctttttctctatatttcaatctaaataagtgatttt 11767762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 15570819 - 15570864
Alignment:
Q  136 ccctcttcatctttttctctctaattcaatctaaataagtgatttt 181  Q
    |||||||||||||||||||| ||||||||||||||||  |||||||    
T  15570819 ccctcttcatctttttctctataattcaatctaaatatttgatttt 15570864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 185
Target Start/End: Complemental strand, 35475548 - 35475457
Alignment:
Q  93 cattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| ||||| |||||||| || | || ||| ||||| ||| | |||||||||| || ||| || ||||||||||||||||||||||||||    
T  35475548 cattgaggggtgattttgggttaattcttgatctgaaatcacctc-tcttcatcttgttatctatatttcaatctaaataagtgattttcaca 35475457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 14211110 - 14211160
Alignment:
Q  135 cccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||| |||||||||| || |  ||||||||||||||||||||||||||    
T  14211110 cccctctgcatctttttccctttctttcaatctaaataagtgattttcaca 14211160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 27576516 - 27576470
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||| ||||||||||| |||||| |||||||||||| ||||||    
T  27576516 tcttcatccttttctctctatttcaatgtaaataagtgatattcaca 27576470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 42886392 - 42886438
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||| ||||||||||| ||||||| ||||||||| ||||||||    
T  42886392 tcttcatccttttctctctatttcaatcaaaataagtgcttttcaca 42886438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 1582288 - 1582243
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcac 184  Q
    ||||||| |||||||||| | || ||||||||||||||||||||||    
T  1582288 tcttcatatttttctctccattttaatctaaataagtgattttcac 1582243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 1602527 - 1602572
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcac 184  Q
    ||||||| |||||||||| | || ||||||||||||||||||||||    
T  1602527 tcttcatatttttctctccattttaatctaaataagtgattttcac 1602572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 30298130 - 30298167
Alignment:
Q  148 ttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||| || ||||||||||||||||||||||||||    
T  30298130 ttttctctatatttcaatctaaataagtgattttcaca 30298167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 35676324 - 35676259
Alignment:
Q  56 tagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttt 121  Q
    |||||||| ||||||   |||| |||||| || ||||||||||||||||||||||| |||| ||||    
T  35676324 tagttttctctctctgaattttctcttactgtttcttcattgaagggtggttttggatcaattttt 35676259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 43148645 - 43148689
Alignment:
Q  141 ttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| ||||||||||| ||| |||||||||||||| |||||||    
T  43148645 ttcatccttttctctctatttcgatctaaataagtgactttcaca 43148689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 46 - 180
Target Start/End: Original strand, 4643686 - 4643821
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattacccc-ctcttca 144  Q
    |||||||| ||||||||| || |||||||||| ||||||||| |||||||||| |||||||||| ||| || |||| | | ||||| ||||| |||||||    
T  4643686 aagtcggccctagttttctctttctaggttttctcttacagtctcttcattgaggggtggttttaggtgaatttttgacctgaaatcacccccctcttca 4643785  T
Q  145 tctttttctctctaattcaatctaaataagtgattt 180  Q
    |||||||||||||| |||||||||||||||||||||    
T  4643786 tctttttctctctatttcaatctaaataagtgattt 4643821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 38706950 - 38706831
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaa 164  Q
    |||||||||||||||||||| || |||||||||| ||||||||||||||||| | || |||  |||| ||||  |||||||||||||||||||| |||||    
T  38706950 ctctctaggttttttcttactgtttcttcattgaggggtggttttgggtcaattcttgatctaaaatcaccct-tcttcatctttttctctctatttcaa 38706852  T
Q  165 tctaaataagtgattttcaca 185  Q
    |||||||||||||||||||||    
T  38706851 tctaaataagtgattttcaca 38706831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 43444227 - 43444361
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||||| ||||||||||||| ||||||| |  ||||||||| |||| |||||||||||| |||| ||| ||||| | ||| |||||||||||    
T  43444227 cggccctagttttctctctctaggttttctcttacaattccttcattgaggggtagttttgggtcaatttttgatctgaaatca-cccatcttcatcttt 43444325  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| || ||||||||||||||||||||||||||    
T  43444326 ttctctttatttcaatctaaataagtgattttcaca 43444361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 9529137 - 9528999
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||||||||  |||| |||||||| ||||||||| |||||| ||| ||||||||||||||||| | || | | ||||| ||||| |||| ||    
T  9529137 aagtcggccctagttttatctctttaggttttctcttacagtttcttcactgaggggtggttttgggtcaattcttgacctgaaatcacccc-tctttat 9529039  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  9529038 ctttttctctttatttcaatctaaataagtgattttcaca 9528999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 1531745 - 1531875
Alignment:
Q  55 ctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttt-tct 153  Q
    ||||||||| || |||||||||| ||||||||| |||||||||| ||||||| ||||||||| | || | | ||||| ||||| |||| ||||||| |||    
T  1531745 ctagttttctctttctaggttttctcttacagtttcttcattgaggggtggtattgggtcaattcttgacctgaaatcacccc-tctttatcttttctct 1531843  T
Q  154 ctctaattcaatctaaataagtgattttcaca 185  Q
    ||||| ||||||||||||||||||||||||||    
T  1531844 ctctatttcaatctaaataagtgattttcaca 1531875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 46 - 181
Target Start/End: Original strand, 9283741 - 9283875
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||||||||| ||||||||||| | ||||||| | |||||||||| |||||||||||||||||   || | | ||||| | |||||||||||    
T  9283741 aagtcggccctagttttctctctctaggttatctcttacaatttcttcattgaggggtggttttgggtcaatacttaacctgaaatca-cccctcttcat 9283839  T
Q  146 ctttttctctctaattcaatctaaataagtgatttt 181  Q
    | |||||||| || ||||||||||||||||||||||    
T  9283840 cgttttctctttatttcaatctaaataagtgatttt 9283875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 10390008 - 10389874
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||||| || |||||||||| ||||| ||| |||||||||| ||||||||||||||||| | || | | ||||| || |  |||||||||||    
T  10390008 cggccctagttttctctttctaggttttctcttatagtttcttcattgaggggtggttttgggtcaattcttgacctgaaatcactca-tcttcatcttt 10389910  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||| |||||||||||||||||| |||||||    
T  10389909 ttctctctatttcaatctaaataagtgactttcaca 10389874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 20569086 - 20569220
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||||||||||||| | |||||||||||||| || | | |||||||||| ||||||||||||||||| | || | | ||||| | ||||||||||| |||    
T  20569086 cggctctagttttctccctctaggttttttcgtataatttcttcattgatgggtggttttgggtcaattcttaacctgaaatca-cccctcttcattttt 20569184  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| || |||||||||||||| |||||||||||    
T  20569185 ttctctttatttcaatctaaataaatgattttcaca 20569220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 35965214 - 35965100
Alignment:
Q  66 tctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaat 165  Q
    |||||||||||| |||| |||  |||||||||| ||||||||||||||||| |||||| | ||||| ||| | |||||||||||||||||||| ||||||    
T  35965214 tctctaggttttctcttccagattcttcattgaggggtggttttgggtcaattttttacctgaaatcacctc-tcttcatctttttctctctatttcaat 35965116  T
Q  166 ctaaataagtgatttt 181  Q
    || |||||||||||||    
T  35965115 ctgaataagtgatttt 35965100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 34024676 - 34024557
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaa 164  Q
    |||||||| |||||||||  ||| |||||||||| |||||||||||| |||| | || | | ||||| ||||| |||||||||||||||||||| |||||    
T  34024676 ctctctagattttttcttttagtttcttcattgaggggtggttttggatcaattcttgacctgaaatcacccc-tcttcatctttttctctctatttcaa 34024578  T
Q  165 tctaaataagtgattttcaca 185  Q
    ||||||||||| |||||||||    
T  34024577 tctaaataagttattttcaca 34024557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 9645804 - 9645670
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| |||||||||  |||||||| ||| ||||||||| |||||||||| |||| |||||||||||| | || | | || || | |||||||||||||||    
T  9645804 cggccctagttttctttctctaggctttatcttacagtttcttcattgaggggtcgttttgggtcaattcttgacctgatatca-cccctcttcatcttt 9645706  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    || |||||| |||||||||||||||||| |||||||    
T  9645705 ttgtctctatttcaatctaaataagtgactttcaca 9645670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 21089992 - 21090121
Alignment:
Q  56 tagttttcactctctaggttttttcttacagtgtcttcattgaaggg-tggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctc 154  Q
    |||||||| ||||||||||||| ||||  ||| |||||||||| ||| ||||||||||||||  ||| ||| ||||| || |  ||||||||||||||||    
T  21089992 tagttttctctctctaggttttctcttctagtttcttcattgagggggtggttttgggtcaatctttgatctgaaatcactca-tcttcatctttttctc 21090090  T
Q  155 tctaattcaatctaaataagtgattttcaca 185  Q
    |||| |||||| |||||||||||||||||||    
T  21090091 tctatttcaatataaataagtgattttcaca 21090121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 2115837 - 2115709
Alignment:
Q  56 tagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctct 155  Q
    |||||||| |||||||| |||||||||||| | | |||||||| ||||||||||||||||| | || | | ||||| ||    |||||||||||||||||    
T  2115837 tagttttctctctctagattttttcttacaatttattcattgaggggtggttttgggtcaattattgacctgaaatcacttt-tcttcatctttttctct 2115739  T
Q  156 ctaattcaatctaaataagtgattttcaca 185  Q
     || ||||||||||||||||||||||||||    
T  2115738 ttatttcaatctaaataagtgattttcaca 2115709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 47416736 - 47416852
Alignment:
Q  68 tctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatct 167  Q
    |||||||||| ||||||| | |||||||||| ||||| ||||||||||| | || |   ||||| | ||||||||||||||||||||| || ||||||||    
T  47416736 tctaggttttctcttacaatttcttcattgaggggtgattttgggtcaattattgacttgaaatca-cccctcttcatctttttctctttatttcaatct 47416834  T
Q  168 aaataagtgattttcaca 185  Q
    ||||||||||||||||||    
T  47416835 aaataagtgattttcaca 47416852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 25273709 - 25273848
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatct-- 147  Q
    |||| ||||||||| |||||||| |||| ||||||||| ||| |||||| |||||||||||| |||| | || | | ||||| | |||||||||||||      
T  25273709 cggccctagttttctctctctagattttctcttacagtttctccattgaggggtggttttggatcaattcttgacctgaaatca-cccctcttcatcttc 25273807  T
Q  148 ---ttttctctctaattcaatctaaataagtgattttcaca 185  Q
       ||||||||||| ||||||||||||||||||||||||||    
T  25273808 atcttttctctctatttcaatctaaataagtgattttcaca 25273848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 31381917 - 31381792
Alignment:
Q  59 ttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctcta 158  Q
    ||||| |||||||| |||| |||||| || ||||| |||| ||||||||||||||||| | || | | ||||| ||||| ||| |||||||||||||||     
T  31381917 ttttctctctctagattttctcttacggtttcttcgttgatgggtggttttgggtcaattcttgacctgaaatcaccccttct-catctttttctctctt 31381819  T
Q  159 attcaatctaaataagtgattttcaca 185  Q
     |||||| |||||||||||||||||||    
T  31381818 tttcaatttaaataagtgattttcaca 31381792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 50766766 - 50766630
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtct--tcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatct 147  Q
    |||| ||||||||  ||||||||||||| ||||||| | |||  |||||||  |||||||||||||||| | || ||| ||||| | ||| |||||||||    
T  50766766 cggccctagttttttctctctaggttttctcttacaatttctcttcattgagaggtggttttgggtcaattcttgatctgaaatcatccc-tcttcatct 50766668  T
Q  148 ttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||| || |||||||||||||| |||||||||||    
T  50766667 ttttctctttatttcaatctaaataaatgattttcaca 50766630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 6972644 - 6972769
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||| ||||| |||||||||||||||||| | || |||||||||  ||||||||||||||||| | || ||| ||||| ||| | |||||||||||    
T  6972644 cggccctaattttctctctctaggttttttcttccggtttcttcattgg-gggtggttttgggtcaattcttgatctgaaatcacctc-tcttcatcttt 6972741  T
Q  150 ttctctctaattcaatctaaataagtga 177  Q
    || ||| || ||||||||||||||||||    
T  6972742 ttatctgtatttcaatctaaataagtga 6972769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 43154279 - 43154142
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||| ||| ||||||||| |||| |||||||| ||||||| | | | ||||||  |||||||||||||||| | || |   ||||| | |||||||||||    
T  43154279 aagttggccctagttttctctctttaggttttatcttacaatttatccattgagaggtggttttgggtcaattcttgacttgaaatca-cccctcttcat 43154181  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    | ||||||||||| ||||||||||||||||||||||||||    
T  43154180 c-ttttctctctatttcaatctaaataagtgattttcaca 43154142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 53616906 - 53616772
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||| ||||| ||||||||||||| ||||||| | ||||| |||| |||||  |||||||||| | || | | ||||| ||| | |||||||| ||    
T  53616906 cggccctaattttctctctctaggttttctcttacaatttcttcgttgaggggtgactttgggtcaattcttgacctgaaatcaccac-tcttcatcgtt 53616808  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| || ||||||||||||||||||||||||||    
T  53616807 ttctctttatttcaatctaaataagtgattttcaca 53616772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 65 - 181
Target Start/End: Complemental strand, 5333768 - 5333656
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaa 164  Q
    ||||||||||||| |||| | || |||||||||  ||||||||||||||||| |||| |   |||||  | ||||||||||||||||||||||| |||||    
T  5333768 ctctctaggttttctcttcccgtttcttcattg--gggtggttttgggtcaatttttgacatgaaat--caccctcttcatctttttctctctatttcaa 5333673  T
Q  165 tctaaataagtgatttt 181  Q
    | |||||||||||||||    
T  5333672 tataaataagtgatttt 5333656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 181
Target Start/End: Complemental strand, 10359787 - 10359671
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaaggg-tggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattca 163  Q
    |||||||| |||| |||| |||| |||||||||| ||| |||||||||||||| |||| | | ||||| ||||   ||||||||||||||||||| |||     
T  10359787 ctctctagattttctctttcagtttcttcattgagggggtggttttgggtcaatttttgacctgaaatcacccaa-cttcatctttttctctctatttcg 10359689  T
Q  164 atctaaataagtgatttt 181  Q
    ||||||||||||||||||    
T  10359688 atctaaataagtgatttt 10359671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 867986 - 868104
Alignment:
Q  45 aaagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttca 144  Q
    |||| |||| ||||||||| ||||||||||||| |||| |||| |||||||||| |||||||||| |||| | | || |   ||||| | ||||||||||    
T  867986 aaagccggccctagttttctctctctaggttttctcttccagtttcttcattgaggggtggttttaggtcgattcttgacatgaaatca-cccctcttca 868084  T
Q  145 tctttttctctctaattcaa 164  Q
    |||||||||||||| |||||    
T  868085 tctttttctctctatttcaa 868104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 37188847 - 37188713
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||||| ||||||||||||| ||||  ||  | ||||| || | ||||||||||||||| | || | | ||||| || |  |||||||||||    
T  37188847 cggccctagttttctctctctaggttttctcttctagatttttcatcgaggagtggttttgggtcaattattgacctgaaatcactca-tcttcatcttt 37188749  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| || ||||||||||||||||||||||||||    
T  37188748 ttctctatatttcaatctaaataagtgattttcaca 37188713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 185
Target Start/End: Original strand, 51317832 - 51317954
Alignment:
Q  63 cactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaattttt-atcggaaattaccccctcttcatctttttctctctaatt 161  Q
    |||||||||| || | ||||  ||| |||||||||| ||||| ||||||||||| | ||| | | ||||| || |  |||||||||||||||||||| ||    
T  51317832 cactctctagattgtctcttctagtttcttcattgaggggtgattttgggtcaattctttgacctgaaatcactca-tcttcatctttttctctctattt 51317930  T
Q  162 caatctaaataagtgattttcaca 185  Q
    ||||||||||||||||||||||||    
T  51317931 caatctaaataagtgattttcaca 51317954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 8009526 - 8009480
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  8009526 tcttcatctttttctctctatttcaatctaaataagtgattttcaca 8009480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 44947233 - 44947303
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaa 116  Q
    |||||||  ||||||||| ||||||| ||||| ||||||||| |||||||||| |||||||||||||||||    
T  44947233 aagtcggtcctagttttctctctctaagttttctcttacagtttcttcattgaggggtggttttgggtcaa 44947303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 27594091 - 27593959
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||||  ||||||||||||| |||| || | |||||||||| ||||| |||| |||||| |||| |   |||||  | ||||||||||||||    
T  27594091 cggccctagtttttcctctctaggttttctcttccact-tcttcattgatgggtgattttaggtcaatttttgacatgaaat--caccctcttcatcttt 27593995  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| || ||||||||||||||| || |||||||    
T  27593994 ttctctatatttcaatctaaataagcgagtttcaca 27593959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 56194519 - 56194567
Alignment:
Q  137 cctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||    
T  56194519 cctcttcatctttttctctctatttcaatctaaataagtgactttcaca 56194567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 14183729 - 14183772
Alignment:
Q  143 catctttttctctctaattcaatctaaataagtgattttcacaa 186  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  14183729 catctttttctctctatttcaatctaaataagtgattttcacaa 14183772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 49680456 - 49680505
Alignment:
Q  136 ccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||||||    
T  49680456 ccctcttcatctttttctctttatttcaatccaaataagtgattttcaca 49680505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 18139082 - 18139038
Alignment:
Q  137 cctcttcatctttttctctctaattcaatctaaataagtgatttt 181  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||    
T  18139082 cctcttcatcattttctctctatttcaatctaaataagtgatttt 18139038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 49126295 - 49126251
Alignment:
Q  137 cctcttcatctttttctctctaattcaatctaaataagtgatttt 181  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||    
T  49126295 cctcttcatcattttctctctatttcaatctaaataagtgatttt 49126251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 50179611 - 50179671
Alignment:
Q  56 tagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaa 116  Q
    |||||||| |||||||| |||| ||||||||| ||| |||||| |||||||||||||||||    
T  50179611 tagttttctctctctagcttttctcttacagtttctccattgaggggtggttttgggtcaa 50179671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 1008221 - 1008268
Alignment:
Q  143 catctttttctctctaattcaatctaaataagtgattttcacaaaaat 190  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||||    
T  1008221 catctttttctctctattttaatctaaataagtgattttcacataaat 1008268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 5333626 - 5333584
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgatttt 181  Q
    |||||||||||||||||||| |||||| |||||||||||||||    
T  5333626 tcttcatctttttctctctatttcaatataaataagtgatttt 5333584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 12265373 - 12265419
Alignment:
Q  135 cccctcttcatctttttctctctaattcaatctaaataagtgatttt 181  Q
    ||||||||||||||||| || ||| ||||||||||||||||||||||    
T  12265373 cccctcttcatctttttatccctatttcaatctaaataagtgatttt 12265419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 147 - 181
Target Start/End: Original strand, 23100617 - 23100651
Alignment:
Q  147 tttttctctctaattcaatctaaataagtgatttt 181  Q
    |||||||||||||||||||||||||||||||||||    
T  23100617 tttttctctctaattcaatctaaataagtgatttt 23100651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 35261037 - 35261160
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattacc---ccctcttcatctttttc-tctctaat 160  Q
    ||||||||||||| ||||   || |||||||||| ||||| ||||||||||| |||| | | ||||| | |   ||||||||||||||||| ||| || |    
T  35261037 ctctctaggttttctcttctcgtttcttcattga-gggtgattttgggtcaatttttgacctgaaataatcatcccctcttcatctttttcctctttatt 35261135  T
Q  161 tcaatctaaataagtgattttcaca 185  Q
     ||||||||||||||||||||||||    
T  35261136 gcaatctaaataagtgattttcaca 35261160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 29965505 - 29965568
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggtttt 109  Q
    |||||||| ||| ||||| ||||||||||||| ||||||| | | |||||||| ||||||||||    
T  29965505 aagtcggccctaattttctctctctaggttttctcttacaattttttcattgaggggtggtttt 29965568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 32952913 - 32952867
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||||||||| |||||  |||||||||| ||||||||    
T  32952913 tcttcatctttttctctctatttcaaattaaataagtgtttttcaca 32952867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 21405440 - 21405481
Alignment:
Q  144 atctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||| ||||||| |||||||||| |||||||||||||||    
T  21405440 atcttttcctctctatttcaatctaattaagtgattttcaca 21405481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 29965565 - 29965602
Alignment:
Q  148 ttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||| || ||||||||||||||||||||||||||    
T  29965565 ttttctctttatttcaatctaaataagtgattttcaca 29965602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 23329094 - 23329138
Alignment:
Q  141 ttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||| |||||| ||||| |||||||| |||||||||||    
T  23329094 ttcatctttttatctctatttcaacctaaataactgattttcaca 23329138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 46991287 - 46991251
Alignment:
Q  149 tttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||| |||||||||||| |||||||||||||    
T  46991287 tttctctctatttcaatctaaatgagtgattttcaca 46991251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 49072922 - 49072878
Alignment:
Q  141 ttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||| ||||||||| || ||||||||| ||||||||||||||||    
T  49072922 ttcatatttttctctttatttcaatctatataagtgattttcaca 49072878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 52098084 - 52098044
Alignment:
Q  141 ttcatctttttctctctaattcaatctaaataagtgatttt 181  Q
    |||||| ||||||| ||| ||||||||||||||||||||||    
T  52098084 ttcatccttttctccctatttcaatctaaataagtgatttt 52098044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 9e-32; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 27249400 - 27249272
Alignment:
Q  56 tagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctct 155  Q
    |||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||   || | | ||||| | |||||||||||||||||||||    
T  27249400 tagttttctctctctaggttttctcttacaatttcttcattgaagggtggttttgggtcaatacttgacctgaaatca-cccctcttcatctttttctct 27249302  T
Q  156 ctaattcaatctaaataagtgattttcaca 185  Q
     || ||||||||||||||||||||||||||    
T  27249301 ttatttcaatctaaataagtgattttcaca 27249272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 30420503 - 30420637
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||| ||| ||||||||||||||| ||||| | |||||||||| |||||||||||| |||| |||| | | ||||| ||||| |||||||||||    
T  30420503 cggccctagtcttctctctctaggtttttttttacaatttcttcattgaggggtggttttggatcaatttttgacctgaaatcacccc-tcttcatcttt 30420601  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| || ||||||||||||||||||||||||||    
T  30420602 ttctctttatttcaatctaaataagtgattttcaca 30420637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 36233827 - 36233965
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||||||||| |||||||| |||| |||| || | |||||||||| ||||||||||||||||| |  | | | ||||| | |||||||||||    
T  36233827 aagtcggccctagttttctctctctagattttctcttgcaatttcttcattgaggggtggttttgggtcaattcatgacctgaaatca-cccctcttcat 36233925  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  36233926 ctttttctctttatttcaatctaaataagtgattttcaca 36233965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 6173463 - 6173592
Alignment:
Q  55 ctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctc 154  Q
    ||||||||| ||||||||||||| | |||| || |||||||||| |||||||||| |||| | | || | | ||||| | ||||||||||||||||||||    
T  6173463 ctagttttctctctctaggttttcttttacggtttcttcattgaggggtggttttcggtctattcttgacctgaaatca-cccctcttcatctttttctc 6173561  T
Q  155 tctaattcaatctaaataagtgattttcaca 185  Q
    |||| ||||||||||||||||||||||||||    
T  6173562 tctatttcaatctaaataagtgattttcaca 6173592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 9986597 - 9986466
Alignment:
Q  55 ctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttca--tctttttc 152  Q
    ||||||||| ||||||||||||| ||||||||| |||||||||| ||||||||||||||||| | || | | ||||| |  |||||||||  | |||||     
T  9986597 ctagttttctctctctaggttttctcttacagtttcttcattgaggggtggttttgggtcaattcttgacctgaaatca-tccctcttcaatttttttta 9986499  T
Q  153 tctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||||||||||||||||||||||    
T  9986498 tctctaattcaatctaaataagtgattttcaca 9986466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 2808729 - 2808591
Alignment:
Q  46 aagtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcat 145  Q
    |||||||| ||| |||||  | ||||||||||||||| || | |||||||||| ||||||||||||||||| | || | | ||||| ||||| |||||||    
T  2808729 aagtcggccctaattttctttttctaggttttttctttcattttcttcattgaggggtggttttgggtcaattcttgacctgaaatcacccc-tcttcat 2808631  T
Q  146 ctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    || |||||||||| |||| |||||||||||||||||||||    
T  2808630 ctatttctctctatttcagtctaaataagtgattttcaca 2808591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 8971874 - 8971747
Alignment:
Q  59 ttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctc-- 156  Q
    ||||| |||| |||||||||||||||||| |||||||||| ||||||||||||||||| | || | | ||||| |  |||||||||||||||||||||      
T  8971874 ttttctctctttaggttttttcttacagtttcttcattgaggggtggttttgggtcaattcttgacctgaaatca-tccctcttcatctttttctctctt 8971776  T
Q  157 taattcaatctaaataagtgattttcaca 185  Q
    || || |||||||||||||||||||||||    
T  8971775 tattttaatctaaataagtgattttcaca 8971747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 21570663 - 21570529
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| |||||||||  |||||||||||| |||| |||  | ||||||||  |||||||||||||||| | || | | ||||| ||||| |||||||||||    
T  21570663 cggccctagttttctgtctctaggttttctcttccagatttttcattgagtggtggttttgggtcaattcttgacctgaaatcacccc-tcttcatcttt 21570565  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| || ||||||||||||||||||||||||||    
T  21570564 ttctctatatttcaatctaaataagtgattttcaca 21570529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 34598813 - 34598948
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||| ||||| ||||||||||||| |||||| || ||||| |||| |||||||||||| |||| | || | |  |||| | | | |||||||||||    
T  34598813 cggccctaattttctctctctaggttttctcttaccgtttcttcgttgaggggtggttttggatcaattcttgacctcaaatcaactcatcttcatcttt 34598912  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  34598913 ttctctctatttcaatctaaataagtgattttcaca 34598948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 70 - 195
Target Start/End: Complemental strand, 459509 - 459385
Alignment:
Q  70 taggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaa 169  Q
    |||||||| |||| |||| |||||||||| ||||||||||||||||| |||| | | ||||| ||||| |||||||| ||||||||||| |||| | |||    
T  459509 taggttttctcttccagtttcttcattgaggggtggttttgggtcaatttttgacctgaaatcacccc-tcttcatccttttctctctatttcattttaa 459411  T
Q  170 ataagtgattttcacaaaaatatagg 195  Q
    ||||| |||||||||| | |||||||    
T  459410 ataagcgattttcacatagatatagg 459385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 45128040 - 45128164
Alignment:
Q  59 ttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctcta 158  Q
    ||||| ||||||||||||| |||| |  | |||||||||| ||||||||||||||||| | || | | ||||| ||||| ||||||||||||||||| ||    
T  45128040 ttttctctctctaggttttctcttcccatttcttcattga-gggtggttttgggtcaattcttgacctgaaatcacccc-tcttcatctttttctcttta 45128137  T
Q  159 attcaatctaaataagtgattttcaca 185  Q
     |||||||||||||||||| |||||||    
T  45128138 tttcaatctaaataagtgactttcaca 45128164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 40626284 - 40626148
Alignment:
Q  48 gtcggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatct 147  Q
    |||||| ||||||||| |||| |||||||| |||| || | |||| ||||| ||||| ||||||||| | | || | | ||||| ||||| ||||| |||    
T  40626284 gtcggccctagttttctctctttaggttttctcttccattttcttaattgaggggtgattttgggtctattcttgacctgaaatcacccc-tcttcgtct 40626186  T
Q  148 ttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  40626185 ttttctctctatttcaatctaaataagggattttcaca 40626148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 41713015 - 41712886
Alignment:
Q  55 ctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctc 154  Q
    ||||||||| || |||||||||| ||||||| | |||||||||| |||||||||||||| || | || |   ||||| | ||| | |||||| |||||||    
T  41713015 ctagttttctctatctaggttttctcttacaatttcttcattgaggggtggttttgggttaattcttgacgtgaaatca-cccattttcatcattttctc 41712917  T
Q  155 tctaattcaatctaaataagtgattttcaca 185  Q
    |||| || |||||||||||||||||||||||    
T  41712916 tctattttaatctaaataagtgattttcaca 41712886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 3725030 - 3725141
Alignment:
Q  73 gttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaata 172  Q
    ||||| ||||||| | |||| ||||| ||||||||||||||||| |||| | |  |||| |  || |||||||||||||||||||| |||||| ||||||    
T  3725030 gttttctcttacaatttctttattgaggggtggttttgggtcaatttttgacctaaaatcattcc-tcttcatctttttctctctatttcaatataaata 3725128  T
Q  173 agtgattttcaca 185  Q
    |||||||||||||    
T  3725129 agtgattttcaca 3725141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 31581888 - 31581840
Alignment:
Q  137 cctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31581888 cctcttcatctttttctctctatttcaatctaaataagtgattttcaca 31581840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 26025597 - 26025530
Alignment:
Q  118 tttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||| ||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||    
T  26025597 ttttgatctgaaatcaccccatcttcatctttttctctctatttcaatctaaataagtggttttcaca 26025530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 33229243 - 33229129
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||| | ||||||||||||| |||||| || |||||||||||||||||||||||||||| | || | |  |||| | || ||||||||||||    
T  33229243 cggccctagtttcctctctctaggttttctcttactgtttcttcattgaagggtggttttgggtcaattattgagctaaaatca-cctctcttcatcttt 33229145  T
Q  150 ttctctctaattcaat 165  Q
    || |||||| ||||||    
T  33229144 ttttctctatttcaat 33229129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 4192749 - 4192799
Alignment:
Q  135 cccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  4192749 cccctcttcatctttttctctatatttcaatctaaataagtgattttcaca 4192799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 3270477 - 3270349
Alignment:
Q  56 tagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctct 155  Q
    |||||||  ||||||| ||||| ||||||  | |||||||||| ||||||||||||||||| | || | | ||||| || |  | ||||||||||||| |    
T  3270477 tagttttttctctctaagttttctcttacgatttcttcattgaggggtggttttgggtcaattcttgacctgaaatcactcatt-ttcatctttttcttt 3270379  T
Q  156 ctaattcaatctaaataagtgattttcaca 185  Q
     || ||||||||||||||||||||||||||    
T  3270378 ttatttcaatctaaataagtgattttcaca 3270349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 25086862 - 25086986
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    ||||||||||||||  |||||||||||| |||| | || |||||||| | ||||||||||||||||| | || | | ||||| | |||||||||||||||    
T  25086862 cggctctagttttc--tctctaggttttctcttccggtttcttcatttaggggtggttttgggtcaattattgacctgaaatca-cccctcttcatcttt 25086958  T
Q  150 ttctctctaattcaatctaaataagtga 177  Q
    |||  |||| || |||||| ||||||||    
T  25086959 ttccatctatttgaatctatataagtga 25086986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 177
Target Start/End: Complemental strand, 20047327 - 20047211
Alignment:
Q  59 ttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctcta 158  Q
    ||||| ||||||||||||| |||||| || |||||||||  |||| ||||||| |||| | || | | |||||  | |||| |||||||||||||||||     
T  20047327 ttttctctctctaggttttctcttaccgtttcttcattggggggtagttttggatcaattcttgacctgaaat--caccctattcatctttttctctctt 20047230  T
Q  159 attcaatctaaataagtga 177  Q
     ||||||||||||||||||    
T  20047229 tttcaatctaaataagtga 20047211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 27477065 - 27477115
Alignment:
Q  135 cccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||||||||||| || |||||||||||||||| |||||||||    
T  27477065 cccctcttcatctttttctctatatttcaatctaaataagtaattttcaca 27477115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 32680749 - 32680703
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||    
T  32680749 tcttcatctttttctctctatttcaatctaaataagtgactttcaca 32680703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 40660183 - 40660052
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||||||||| || | ||| |||| ||||| ||| |||||||||| ||||||||||| ||||| | || | | ||||| || |  |||||||||||    
T  40660183 cggccctagttttctctttttagattttctcttagagtttcttcattga-gggtggttttgagtcaattcttgacctgaaatcacaca-tcttcatcttt 40660086  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| |  ||||||||||||||||||||||||||    
T  40660085 ttctctat--ttcaatctaaataagtgattttcaca 40660052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 185
Target Start/End: Complemental strand, 7015941 - 7015831
Alignment:
Q  74 ttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaatctaaataa 173  Q
    |||| ||||||| | |||||||||  || |||||||||||||| | || | | ||||| ||||| || | |||||||||||| || ||||||||||||||    
T  7015941 ttttctcttacaatttcttcattgggggttggttttgggtcaattcttgacctgaaatcacccc-tcctaatctttttctctttatttcaatctaaataa 7015843  T
Q  174 gtgattttcaca 185  Q
     |||||||||||    
T  7015842 ttgattttcaca 7015831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 31581942 - 31581891
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaa 116  Q
    ||||||||||||| |||||| || |||||||||| |||||||||||||||||    
T  31581942 ctctctaggttttctcttactgtttcttcattgaggggtggttttgggtcaa 31581891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 42949624 - 42949675
Alignment:
Q  135 cccctcttcatcttttt-ctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  42949624 cccctcttcatcttttttctctttatttcaatctaaataagtgattttcaca 42949675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 39642026 - 39641980
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||||||||||||||| |||||| ||||||| |||||||||||    
T  39642026 tcttcatctttttctctctatttcaatttaaataaatgattttcaca 39641980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 41430938 - 41430978
Alignment:
Q  135 cccctcttcatctttttctctctaattcaatctaaataagt 175  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  41430938 cccctcttcatctttttctctatatttcaatctaaataagt 41430978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 18694961 - 18695004
Alignment:
Q  139 tcttcatctttt-tctctctaattcaatctaaataagtgatttt 181  Q
    |||||||||||| |||||||| ||||||||||||||||||||||    
T  18694961 tcttcatcttttttctctctatttcaatctaaataagtgatttt 18695004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 8805781 - 8805827
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||| ||||||||| || |||||| |||||||||||||||||||    
T  8805781 tcttcatatttttctctttatttcaatttaaataagtgattttcaca 8805827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 32913152 - 32913202
Alignment:
Q  135 cccctcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||||| ||| |||||||| || |||||| |||||||||||||||||||    
T  32913152 cccctcttgatccttttctctatatttcaatttaaataagtgattttcaca 32913202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 22421659 - 22421696
Alignment:
Q  148 ttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  22421659 ttttctctctatttcaatctaaataagtgactttcaca 22421696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 27949339 - 27949383
Alignment:
Q  141 ttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    |||||| ||||| ||||  ||||||||||||||||||||||||||    
T  27949339 ttcatccttttcgctctgtttcaatctaaataagtgattttcaca 27949383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 362043 - 361917
Alignment:
Q  56 tagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctct 155  Q
    |||||||| |||| |||||||| ||||||||| |||||||||| ||||||||||| ||||| | || | | ||||| | ||||||| ||||||||  |||    
T  362043 tagttttctctctttaggttttctcttacagtttcttcattgaggggtggttttgagtcaattcttgacctgaaatca-cccctctccatctttt--tct 361947  T
Q  156 ctaattcaatctaaataagtgattttcaca 185  Q
    ||| |||||||||||||||| |||||||||    
T  361946 ctatttcaatctaaataagtaattttcaca 361917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 8557 - 8676
Alignment:
Q  65 ctctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaa 164  Q
    ||||| ||||||| |||| |||| |||||||||| |||||||||||||| || | || |   ||||| ||||| | ||||||||||| |||||| |||||    
T  8557 ctctccaggttttctcttccagtttcttcattgaggggtggttttgggttaattcttaacttgaaatcacccctt-ttcatctttttatctctatttcaa 8655  T
Q  165 tctaaataagtgattttcaca 185  Q
    |||||||||||||||||||||    
T  8656 tctaaataagtgattttcaca 8676  T

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Target: scaffold0495 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 5237 - 5346
Alignment:
Q  66 tctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatctttttctctctaattcaat 165  Q
    |||||||||||| |||| | || |||||||||  ||||||||||||||||| | || | | ||||| ||||| ||||||||||| |||||||| ||||||    
T  5237 tctctaggttttctcttcccgtttcttcattgg-gggtggttttgggtcaattcttgacctgaaatcacccc-tcttcatctttctctctctacttcaat 5334  T
Q  166 ctaaataagtga 177  Q
    ||||||||||||    
T  5335 ctaaataagtga 5346  T

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Target: scaffold0426 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 6161 - 6294
Alignment:
Q  50 cggctctagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaaatttttatcggaaattaccccctcttcatcttt 149  Q
    |||| ||| ||||| |||| |||||||| |||| |||| |||||||||| |||||||||  |||||| | || | |  |||| ||||| |||||||||||    
T  6161 cggccctaattttctctctttaggttttctcttccagtttcttcattga-gggtggtttcaggtcaattcttgacctaaaatcacccc-tcttcatcttt 6258  T
Q  150 ttctctctaattcaatctaaataagtgattttcaca 185  Q
    || |||||| | ||||||||||||||||||||||||    
T  6259 ttttctctattccaatctaaataagtgattttcaca 6294  T

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Target: scaffold0146 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 16489 - 16443
Alignment:
Q  139 tcttcatctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  16489 tcttcatctgtttctctctatttcaatctaaataagtgattttcaca 16443  T

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Target: scaffold0608 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 70 - 130
Alignment:
Q  56 tagttttcactctctaggttttttcttacagtgtcttcattgaagggtggttttgggtcaa 116  Q
    |||||||| |||||||| |||| ||||||||| ||| |||||| |||||||||||||||||    
T  70 tagttttctctctctagcttttctcttacagtttctccattgaggggtggttttgggtcaa 130  T

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Target: scaffold0014 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 201534 - 201492
Alignment:
Q  143 catctttttctctctaattcaatctaaataagtgattttcaca 185  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  201534 catctttttctctatatttcaatctaaataagtgattttcaca 201492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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