View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_549 (Length: 207)

Name: NF6864A_low_549
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_549
NF6864A_low_549
[»] chr8 (8 HSPs)
chr8 (14-177)||(28846498-28846661)
chr8 (16-165)||(27190660-27190809)
chr8 (16-167)||(13152531-13152682)
chr8 (16-177)||(14446710-14446870)
chr8 (16-175)||(24333593-24333752)
chr8 (16-54)||(16532768-16532806)
chr8 (16-91)||(9256355-9256427)
chr8 (130-177)||(9256298-9256345)
[»] chr4 (8 HSPs)
chr4 (16-177)||(31944493-31944654)
chr4 (16-80)||(4325387-4325450)
chr4 (16-54)||(12211363-12211401)
chr4 (124-177)||(51379518-51379571)
chr4 (119-167)||(24104671-24104719)
chr4 (75-137)||(24104597-24104659)
chr4 (16-54)||(53693171-53693209)
chr4 (16-54)||(55464797-55464835)
[»] chr3 (7 HSPs)
chr3 (17-177)||(3857014-3857174)
chr3 (16-177)||(51261856-51262017)
chr3 (16-159)||(15667868-15668011)
chr3 (16-54)||(43137127-43137165)
chr3 (16-54)||(24908530-24908568)
chr3 (16-54)||(31989029-31989067)
chr3 (16-54)||(37382006-37382044)
[»] chr2 (3 HSPs)
chr2 (16-176)||(12539452-12539612)
chr2 (16-177)||(34317604-34317765)
chr2 (16-50)||(35649797-35649831)
[»] chr5 (5 HSPs)
chr5 (19-177)||(8785660-8785817)
chr5 (16-177)||(3055358-3055520)
chr5 (16-177)||(11852592-11852753)
chr5 (27-173)||(27168943-27169089)
chr5 (16-109)||(23244707-23244800)
[»] chr7 (12 HSPs)
chr7 (16-177)||(43727873-43728034)
chr7 (16-177)||(9230278-9230439)
chr7 (16-107)||(23804635-23804726)
chr7 (49-168)||(24276397-24276517)
chr7 (16-103)||(23180022-23180109)
chr7 (52-173)||(5287949-5288070)
chr7 (38-177)||(25024460-25024599)
chr7 (16-70)||(8638598-8638652)
chr7 (16-54)||(45197644-45197682)
chr7 (16-54)||(19399978-19400016)
chr7 (16-54)||(27387443-27387481)
chr7 (16-44)||(18375416-18375444)
[»] chr6 (4 HSPs)
chr6 (16-177)||(12180662-12180823)
chr6 (19-173)||(11970841-11970995)
chr6 (124-166)||(8035493-8035535)
chr6 (52-94)||(8035438-8035480)
[»] chr1 (11 HSPs)
chr1 (16-177)||(30559142-30559303)
chr1 (16-165)||(48606749-48606898)
chr1 (16-177)||(9636999-9637159)
chr1 (16-177)||(14498775-14498935)
chr1 (16-94)||(52753954-52754032)
chr1 (16-69)||(25017371-25017424)
chr1 (19-70)||(32379992-32380043)
chr1 (16-69)||(40864856-40864909)
chr1 (80-177)||(30054742-30054839)
chr1 (125-177)||(52754030-52754082)
chr1 (16-54)||(17127439-17127477)
[»] scaffold0178 (1 HSPs)
scaffold0178 (16-167)||(17627-17778)
[»] scaffold0002 (1 HSPs)
scaffold0002 (16-141)||(435492-435617)
[»] scaffold0007 (1 HSPs)
scaffold0007 (16-54)||(259918-259956)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 177
Target Start/End: Complemental strand, 28846661 - 28846498
Alignment:
Q  14 acatcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28846661 acatcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttg 28846562  T
Q  114 gaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28846561 gcaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 28846498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 27190809 - 27190660
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| |||||| || |||      
T  27190809 atcatcaagtcattgaaccacacatcgttgatcttgtttgtaacaattctttctcgcgggcttataagattattttactagcttgttgacatggcttgac 27190710  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttggtgcac 165  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||||||    
T  27190709 aactggtggacttccaacttttgttgatgttggtaatagctttggtgcac 27190660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 13152531 - 13152682
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || |||      
T  13152531 atcatcaagtcattgaaccacacagcgttgatcatgttggtaacaattctttctcacgggcttataagattattttactagctttttgacatggcttgat 13152630  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttggtgcaccc 167  Q
    |||||||  |||| |||||||||||||||||||| |||||||||||||||||    
T  13152631 aactggtgtacttccaacttttgttgatgttggtaatagctttggtgcaccc 13152682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 14446870 - 14446710
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||  |||      
T  14446870 atcatcaagtcattgaaccacaaatcgttgatcttgt-ggtaacaattctttctcgcagacttataagattattttactagcttattgacaggacttgac 14446772  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
     |||||| ||||| |||||||||||||||||||| |||||||||||| |||| |||||||||    
T  14446771 tactggtggacttccaacttttgttgatgttggtaatagctttggtgtacccaatattgttg 14446710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 24333752 - 24333593
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |||      
T  24333752 atcataaagtcattgaatcatacatcgttgatcttgttggtaacaattctttctcacgggcttataagattattttactagcttattgacaagacttgac 24333653  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgt 175  Q
    ||| ||| ||||| |||||||| ||||||||||| |||| ||||||||||| | ||||||    
T  24333652 aaccggtggacttccaacttttattgatgttggtaatagttttggtgcacctgctattgt 24333593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 16532768 - 16532806
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttg 54  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16532768 atcatcaagtcattgaaccacacatcgttgatcttgttg 16532806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 9256427 - 9256355
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattatttt 91  Q
    |||||||||||||| ||||||||||| |||||| | |||||   ||||||||||||||  ||||||||||||||||    
T  9256427 atcatcaagtcattaaaccacacatcattgatcatattggt---aattctttctcacgtgcttataagattatttt 9256355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 9256345 - 9256298
Alignment:
Q  130 caacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    |||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  9256345 caacttttgttgatgttggtaatagctttggtgcacccgctatcgttg 9256298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 31944654 - 31944493
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||| |||      
T  31944654 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacgagcttataagattattttactagcttattggcagggcttgat 31944555  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    ||||||| ||||| ||||||||||| |||||||| ||||||||  |||||||| ||||||||    
T  31944554 aactggtggacttccaacttttgttaatgttggtaatagctttcatgcacccgctattgttg 31944493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 4325450 - 4325387
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttat 80  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||    
T  4325450 atcatcaagtcattgaaccacacatcgttgatcttgttggtaac-attctttcttacgggcttat 4325387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 12211363 - 12211401
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttg 54  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12211363 atcatcaagtcattgaaccacacatcgttgatcttgttg 12211401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 51379571 - 51379518
Alignment:
Q  124 gacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    ||||| |||||||||||||||||||| |||||||||||||||| | ||||||||    
T  51379571 gacttccaacttttgttgatgttggtaatagctttggtgcacctgctattgttg 51379518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 24104671 - 24104719
Alignment:
Q  119 tggtagacttacaacttttgttgatgttggttatagctttggtgcaccc 167  Q
    |||| ||||| |||||||||||||||||||| |||||||||||||||||    
T  24104671 tggtggactttcaacttttgttgatgttggtgatagctttggtgcaccc 24104719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 24104597 - 24104659
Alignment:
Q  75 acttataagattattttactagcttattgacagggtttggaaactggtagacttacaactttt 137  Q
    |||||||||||| |||||||||||||||| ||| | |||  ||||||| ||||| ||||||||    
T  24104597 acttataagattcttttactagcttattggcagagcttgataactggtggacttccaactttt 24104659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 53693171 - 53693209
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttg 54  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  53693171 atcatcaagtcattgaaccacacaccgttgatcatgttg 53693209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 55464797 - 55464835
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttg 54  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  55464797 atcatcaagtcattcaaccacacattgttgatcttgttg 55464835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 3857014 - 3857174
Alignment:
Q  17 tcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaa 116  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||  |    
T  3857014 tcatcaagtcatttaaccacacatcgttgatcttgatggtaacaattatttctcacgggcttataagattattttactagcttattgacagggcttgata 3857113  T
Q  117 actggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    |||||| ||||| ||||||||||||||||| || |||||||||||||||| | ||||||||    
T  3857114 actggtggacttccaacttttgttgatgttcgtaatagctttggtgcacctgctattgttg 3857174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 51262017 - 51261856
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    |||||||| |||||| ||||||| |||||||||||||||||||||||||||| |||||  ||||| | ||||||||||||||||||||||||||||||      
T  51262017 atcatcaattcattgtaccacacttcgttgatcttgttggtaacaattctttttcacgagcttattatattattttactagcttattgacagggtttgac 51261918  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||| |||||| | ||||||||    
T  51261917 aactggtggacttccaacttttgttgatgttggtaatagctttgatgcacctgctattgttg 51261856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 15668011 - 15667868
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||||||||||||| ||||||||| |||| |||      
T  15668011 atcatcaagttattgaaccacacatccttgatcttgttggtaacaattctttctcatgggtttataagattattttacttgcttattgatagggcttgat 15667912  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttg 159  Q
    |||| || ||||| |||||||||||||||||||| |||| ||||    
T  15667911 aactagtggacttccaacttttgttgatgttggtaataggtttg 15667868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 43137165 - 43137127
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttg 54  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  43137165 atcatcaagtcattgaaccatacatcgttgatcttgttg 43137127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 24908530 - 24908568
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttg 54  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  24908530 atcatcaagtcattcaaccacacattgttgatcttgttg 24908568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 31989067 - 31989029
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttg 54  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  31989067 atcatcaagtcattcaaccacacattgttgatcttgttg 31989029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 37382006 - 37382044
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttg 54  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  37382006 atcatcgagtcatttaaccacacatcgttgatcttgttg 37382044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 5e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 12539612 - 12539452
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || || |||      
T  12539612 atcatcaagtcattgaaccacgcattgttgatcttgttggtaacaattctttctcacgggcttataagattcttttactagcttattggcaaggcttgat 12539513  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgtt 176  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||||||||| |||||||    
T  12539512 aactggtggacttccaacttttgttgatgttggtaatagctttggtgcacccgctattgtt 12539452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 34317604 - 34317765
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||  | |||      
T  34317604 atcatcaagtcattgaaccacacatcattgatcttgttggtaacaattctttctcatggatttataagattcttttactagcttattgacaaagcttgat 34317703  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||    
T  34317704 aactggtggacttccaacttttgttgatgttggtaatagctttggttcacccgctattgttg 34317765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 35649797 - 35649831
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatctt 50  Q
    |||||||||||||||||| ||||||||||||||||    
T  35649797 atcatcaagtcattgaacaacacatcgttgatctt 35649831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 8e-54; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 8785817 - 8785660
Alignment:
Q  19 atcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||| || |||||||  |||    
T  8785817 atcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcattg-cttataagattattttactagcttattaacggggtttgataac 8785719  T
Q  119 tggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    | || ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  8785718 tagtggacttccaacttttgttgatgttggtaatagctttggtgcacccgctattgttg 8785660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 3055520 - 3055358
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||      
T  3055520 atcatcaagtcattgaaccacacatcgttgatcatgttggtaacaattctttctcacgggcttataagattattttactagcttattgacatggcttgat 3055421  T
Q  116 aactggtagacttacaac-ttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    |||||||  ||||  | |  ||||||||||||| | |||||||||||||||||| ||||||||    
T  3055420 aactggtttacttctaccaatttgttgatgttgataatagctttggtgcacccgctattgttg 3055358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 11852753 - 11852592
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    |||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||      
T  11852753 atcatcaagtcattgaaccacacatctttcatcttgttggtaataattctttctcacggacttataagattattttactagcttattgacaggacttgac 11852654  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    ||||| | || ||   ||||||||||||||| || |||| ||||||||||||  ||||||||    
T  11852653 aactgatggatttttcacttttgttgatgttagtaatagttttggtgcacccactattgttg 11852592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 27 - 173
Target Start/End: Original strand, 27168943 - 27169089
Alignment:
Q  27 attgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtagac 126  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||||| |  |||  ||||||| |||    
T  27168943 attgaaccacacatcgttgatcttgtttgtaacaattatttctcatgggcttataagattattttactagcttattgacaagacttgataactggtggac 27169042  T
Q  127 ttacaacttttgttgatgttggttatagctttggtgcacccgatatt 173  Q
    || || ||||||||||||||||| ||||||||||| |||||| ||||    
T  27169043 ttccatcttttgttgatgttggtaatagctttggtacacccgctatt 27169089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 23244707 - 23244800
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacaggg 109  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||    
T  23244707 atcatcaagtcattgaacgacacatcgttgatcttgttggtaacaattctttctcattggcttataagattattttactagcttattgacaggg 23244800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 43728034 - 43727873
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  | ||||||||||||||||||||||||||||||| |  |||      
T  43728034 atcatcaagtcattgaaccacacatcgttgatcatgttggtaacaattctttctcataggcttataagattattttactagcttattgacatgagttgat 43727935  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    |||||||  |||| |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  43727934 aactggtgtacttccaacttttgttgatgttggtaatagctttggtgcacccgctattgttg 43727873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 9230439 - 9230278
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||| || |||      
T  9230439 atcatcaagtcattgaaccacacatcgttgaccatgttggtaacaattttttctaacgggcttataagattattttactagcttattgacatggcttgat 9230340  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    ||||| |  | || |||||||||||||||||| | |||||||||||||||||| ||||||||    
T  9230339 aactgatgtatttccaacttttgttgatgttgataatagctttggtgcacccgctattgttg 9230278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 23804635 - 23804726
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacag 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  23804635 atcaacaagtcattgaaccacacatcgttgatcttgttggtaaccattctttctcacaaacttataagattattttactagcttattgacag 23804726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 168
Target Start/End: Original strand, 24276397 - 24276517
Alignment:
Q  49 ttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga-aactggtagacttacaacttttgttgatgttg 147  Q
    ||||||||||||||||||||| |||   ||||||||||| |||||||||||||||| || || | || ||||||| ||||| ||||||||||||||||||    
T  24276397 ttgttggtaacaattctttctaacgaggttataagattaatttactagcttattgatagagtcttgacaactggtggacttccaacttttgttgatgttg 24276496  T
Q  148 gttatagctttggtgcacccg 168  Q
    |||||||||||||||||||||    
T  24276497 gttatagctttggtgcacccg 24276517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 23180022 - 23180109
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattg 103  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  23180022 atcatcaagttattgaaacacacatcgttgatcttgttggtaacaattatttctcacgagcttataagattattttactagcttattg 23180109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 5288070 - 5287949
Alignment:
Q  52 ttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggtta 151  Q
    ||||||||| ||||||||||||  ||| ||||||||||||||||||||||||||||| ||||  ||| ||| ||||| ||||||||||||||| |||| |    
T  5288070 ttggtaacacttctttctcacgagcttgtaagattattttactagcttattgacaggatttgacaaccggtggacttccaacttttgttgatgatggtaa 5287971  T
Q  152 tagctttggtgcacccgatatt 173  Q
    |||||||||| |||||| ||||    
T  5287970 tagctttggtacacccgctatt 5287949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 177
Target Start/End: Complemental strand, 25024599 - 25024460
Alignment:
Q  38 catcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtagacttacaactttt 137  Q
    |||||||||| || || |||||||||| ||||| | | ||||||||||||||||||||||||||| ||| || |||  || |||| ||||| ||||||||    
T  25024599 catcgttgattttattagtaacaattccttctcgccggcttataagattattttactagcttattaacatggattgacaattggtggacttccaactttt 25024500  T
Q  138 gttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    ||||||| |||| |||||||||||||| ||| ||||||||    
T  25024499 gttgatgctggtaatagctttggtgcatccgctattgttg 25024460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 8638652 - 8638598
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctc 70  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  8638652 atcatcaagtaattaaaccacacgtcgttgatcttgttggtaacaattctttctc 8638598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 45197682 - 45197644
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttg 54  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  45197682 atcatcaagtcattgaaccacacattgttgatcttgttg 45197644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 19400016 - 19399978
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttg 54  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  19400016 atcatcaagtcattcaaccacacattgttgatcttgttg 19399978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 27387443 - 27387481
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttg 54  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  27387443 atcatcaagtcattcaaccacacattgttgatcttgttg 27387481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 18375444 - 18375416
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgtt 44  Q
    |||||||||||||||||||||||||||||    
T  18375444 atcatcaagtcattgaaccacacatcgtt 18375416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 12180662 - 12180823
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| |||      
T  12180662 atcatcaagtcattgaaccacacaatgttgatcttgttggtaacaattttttctcacgggcttataagattattttaccagcttattgacagggcttgat 12180761  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    ||||| | ||||| ||||||||||||||||| || ||| |||||| ||||||| ||||||||    
T  12180762 aactgatggactttcaacttttgttgatgtttgtaataactttggcgcacccgctattgttg 12180823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 11970995 - 11970841
Alignment:
Q  19 atcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaac 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||||||||| |||| ||  |||||||  |||    
T  11970995 atcaagtcattgaaccacacatcgttgatcttattggtaacaattctttctcacatacttataaaattattttactagattatagatggggtttgacaac 11970896  T
Q  119 tggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatatt 173  Q
    | || |||||   ||||||| |||||||||| ||||||||| |||||||| ||||    
T  11970895 tagtggacttcatacttttgctgatgttggtaatagctttgctgcacccgctatt 11970841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 8035493 - 8035535
Alignment:
Q  124 gacttacaacttttgttgatgttggttatagctttggtgcacc 166  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  8035493 gacttccaacttttgttgatgttggtaatagctttggtgcacc 8035535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 8035438 - 8035480
Alignment:
Q  52 ttggtaacaattctttctcacggacttataagattattttact 94  Q
    ||||||||||||||||||||||  | |||||||||||||||||    
T  8035438 ttggtaacaattctttctcacgagcatataagattattttact 8035480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 30559142 - 30559303
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||  ||||||||| |||||||||||||||||||||  | |||      
T  30559142 atcatcaagtcatagaaccacacatcgttgatcttgttgataacaattctttctcgcgagcttataagaatattttactagcttattgacaaagcttgac 30559241  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    ||| ||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  30559242 aaccggtggactttcaacttttgttgatgttggtaatagctttggtgcacccgctattgttg 30559303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 48606749 - 48606898
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| || |||||||||||||||||||  |||||||||||||||      
T  48606749 atcatcaagtcattgaaccacacatcgttgatcttgttggtagcaattctttcccacgaacatataagattattttactagaatattgacagggtttgat 48606848  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttggtgcac 165  Q
    |||| || ||||| |||||||||||||| ||||| |||||||||||||||    
T  48606849 aactagtggacttccaacttttgttgattttggtaatagctttggtgcac 48606898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 9637159 - 9636999
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| ||||| ||       
T  9637159 atcatcaagtcattgaaccacgcatcattgatcttgttggtaacaattatttctcacgaacttataagatta-tttactagcttattggcagggctttat 9637061  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    ||| ||| ||||| ||||||||||||||||| || || ||||||||||||||| ||||||||    
T  9637060 aaccggtggactttcaacttttgttgatgttagtaatggctttggtgcacccgctattgttg 9636999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 14498935 - 14498775
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||| |||||||||||  ||||||||||||||||||||||||||||||| || |||      
T  14498935 atcatcaagtcattga-ccacaaatcgttgatcatgttggtaacaaatctttctcacgagcttataagattattttactagcttattgacatggcttgat 14498837  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
     ||||||  |||| |||||||||||||||||| | ||||||||||| |||||| ||||||||    
T  14498836 gactggtgtacttccaacttttgttgatgttgataatagctttggtacacccgctattgttg 14498775  T

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Target: chr1; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 52753954 - 52754032
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttact 94  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | |||||||||||||||||||    
T  52753954 atcatcaagtcattgaaccacacatcgttgatcatgttggtaataattctttctcacaggcttataagattattttact 52754032  T

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Target: chr1; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 25017424 - 25017371
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttct 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25017424 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttct 25017371  T

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Target: chr1; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 32379992 - 32380043
Alignment:
Q  19 atcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctc 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32379992 atcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctc 32380043  T

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Target: chr1; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 40864856 - 40864909
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttct 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40864856 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattatttct 40864909  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 30054839 - 30054742
Alignment:
Q  80 taagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    ||||||||||||||||||||||||  |||| |||  ||| ||| ||||| |||||||||||||||||||| || | |||  |||||||| ||||||||    
T  30054839 taagattattttactagcttattggtagggcttgacaaccggtggacttccaacttttgttgatgttggtaatggttttaatgcacccgctattgttg 30054742  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 52754030 - 52754082
Alignment:
Q  125 acttacaacttttgttgatgttggttatagctttggtgcacccgatattgttg 177  Q
    |||| ||||||||||| |||||| | |||||||||||||||||| ||||||||    
T  52754030 actttcaacttttgttaatgttgataatagctttggtgcacccgctattgttg 52754082  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 17127477 - 17127439
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttg 54  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  17127477 atcatcaagtcattcaaccacacattgttgatcttgttg 17127439  T

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Target: scaffold0178 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 17778 - 17627
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |  |||||||||||||||||||||||||||||||| | |||      
T  17778 atcatcaagtcattgaaccacacatcgttgatcttgttgataacaattatttctaatgagcttataagattattttactagcttattgacagagattgat 17679  T
Q  116 aactggtagacttacaacttttgttgatgttggttatagctttggtgcaccc 167  Q
    ||||||| ||||| |||||||||||||||||||| |||| ||||||||||||    
T  17678 aactggtggacttccaacttttgttgatgttggtaatagttttggtgcaccc 17627  T

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Target: scaffold0002 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 435492 - 435617
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga 115  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||||| || |||      
T  435492 atcatcaagtcattgagccacacattattgatcttgttggtaacaattttttctcacgagcttataagattattttactaacttattgacatgggttgac 435591  T
Q  116 aactggtagacttacaacttttgttg 141  Q
    ||||||| |||||  |||||||||||    
T  435592 aactggtggacttcgaacttttgttg 435617  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 259956 - 259918
Alignment:
Q  16 atcatcaagtcattgaaccacacatcgttgatcttgttg 54  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  259956 atcatcaagtcattgaaccactcattgttgatcttgttg 259918  T

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