View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_557 (Length: 203)

Name: NF6864A_low_557
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_557
NF6864A_low_557
[»] chr6 (9 HSPs)
chr6 (38-165)||(31564990-31565117)
chr6 (15-166)||(33414568-33414719)
chr6 (15-122)||(33269541-33269648)
chr6 (15-162)||(33258194-33258343)
chr6 (26-142)||(33384040-33384156)
chr6 (65-161)||(33278972-33279068)
chr6 (15-166)||(33395052-33395205)
chr6 (68-166)||(33280358-33280456)
chr6 (28-72)||(33293034-33293078)
[»] chr2 (1 HSPs)
chr2 (15-166)||(17447830-17447981)
[»] scaffold0428 (3 HSPs)
scaffold0428 (15-162)||(2315-2464)
scaffold0428 (65-161)||(15185-15281)
scaffold0428 (68-166)||(13797-13895)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 3e-59; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 38 - 165
Target Start/End: Complemental strand, 31565117 - 31564990
Alignment:
Q  38 tgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgt 137  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  138 gaatgtatgtagcgattcttccttcagc 165  Q
    ||||||||||| ||||||||||||||||    
T  31565017 gaatgtatgtaccgattcttccttcagc 31564990  T

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Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 33414568 - 33414719
Alignment:
Q  15 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 114  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || | ||||||||||||||| |||||||||||    
T  33414568 gaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcacttcaat 33414667  T
Q  115 tagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagct 166  Q
    |||||||| |||  ||| |||||||||||||||| |||||||||||||||||    
T  33414668 tagaacaccaatacgtgcatcgtgaatgtatgtaccgattcttccttcagct 33414719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 33269541 - 33269648
Alignment:
Q  15 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 114  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| || | |||||| |||||||| |||||||||||    
T  33269541 gaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcacttcaat 33269640  T
Q  115 tagaacac 122  Q
    ||||||||    
T  33269641 tagaacac 33269648  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 33258194 - 33258343
Alignment:
Q  15 gaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 113  Q
    |||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||    
T  33258194 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 33258293  T
Q  114 ttagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttc 162  Q
    ||||||||| ||||||||||||| || || |||||| |||||||||||||    
T  33258294 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttc 33258343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 33384040 - 33384156
Alignment:
Q  26 caagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaa 125  Q
    |||||||| ||||||||||||||||||| ||| |||||||| | |||||||||||| |||| |||||| |||| ||| |||||||||||||||||||  |    
T  33384040 caagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccga 33384139  T
Q  126 tgtgtgaatcgtgaatg 142  Q
    ||||||||| |||||||    
T  33384140 tgtgtgaatagtgaatg 33384156  T

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Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 33278972 - 33279068
Alignment:
Q  65 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttcctt 161  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  33278972 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctt 33279068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 33395052 - 33395205
Alignment:
Q  15 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttcta--ccgataaagtccgtttcacatttcacttca 112  Q
    |||||||||||||||||||   |||||||| |||||||  ||| |||||||||||| | ||||||||   || | |||||| |||||||| |||||||||    
T  33395052 gaacctgtggacaagcagcctattgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagttcacttca 33395151  T
Q  113 attagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagct 166  Q
    || ||||||   ||| ||| ||||| ||||||| || |||||||||||||||||    
T  33395152 atcagaacatagatgcgtgcatcgtcaatgtatttaccgattcttccttcagct 33395205  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 33280358 - 33280456
Alignment:
Q  68 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagct 166  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| ||||||||||    
T  33280358 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagct 33280456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 33293034 - 33293078
Alignment:
Q  28 agcagcaacttgcattgcaagatcatgaacaaactccttgaattt 72  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  33293034 agcagcaacttgcattgcaagatcattaaccaactccttgaattt 33293078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 17447981 - 17447830
Alignment:
Q  15 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 114  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||| || | |||||| |||||| | |||| ||||||    
T  17447981 gaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaat 17447882  T
Q  115 tagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagct 166  Q
    |||| |||  ||| ||| |||||||||||||||| |||||||||||||||||    
T  17447881 tagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagct 17447830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 2315 - 2464
Alignment:
Q  15 gaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 113  Q
    |||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||    
T  2315 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 2414  T
Q  114 ttagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttc 162  Q
    ||||||||| ||||||||||||| || || |||||| |||||||||||||    
T  2415 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttc 2464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 15281 - 15185
Alignment:
Q  65 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttcctt 161  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  15281 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctt 15185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 13895 - 13797
Alignment:
Q  68 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagct 166  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| ||||||||||    
T  13895 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagct 13797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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