View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_559 (Length: 202)

Name: NF6864A_low_559
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_559
NF6864A_low_559
[»] chr2 (4 HSPs)
chr2 (27-202)||(38251820-38251995)
chr2 (27-202)||(43157547-43157722)
chr2 (127-202)||(38251996-38252072)
chr2 (127-202)||(43157470-43157546)
[»] chr1 (5 HSPs)
chr1 (27-202)||(11474971-11475146)
chr1 (27-202)||(11503011-11503186)
chr1 (127-202)||(11474894-11474970)
chr1 (127-202)||(11502934-11503010)
chr1 (161-202)||(28245195-28245236)
[»] chr7 (1 HSPs)
chr7 (161-202)||(22490436-22490477)
[»] chr6 (3 HSPs)
chr6 (161-202)||(10123422-10123463)
chr6 (161-202)||(19306850-19306891)
chr6 (94-150)||(18330745-18330801)
[»] chr5 (1 HSPs)
chr5 (161-202)||(25382949-25382990)
[»] chr4 (1 HSPs)
chr4 (161-202)||(48795528-48795569)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 38251820 - 38251995
Alignment:
Q  27 caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38251820 caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc 38251919  T
Q  127 aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataacacaatt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38251920 aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaatt 38251995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 27 - 202
Target Start/End: Complemental strand, 43157722 - 43157547
Alignment:
Q  27 caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157722 caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc 43157623  T
Q  127 aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataacacaatt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43157622 aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaatt 43157547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 38251996 - 38252072
Alignment:
Q  127 aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctactataacacaatt 202  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  38251996 aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaatt 38252072  T

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Target: chr2; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 43157546 - 43157470
Alignment:
Q  127 aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctactataacacaatt 202  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  43157546 aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaatt 43157470  T

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Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 27 - 202
Target Start/End: Complemental strand, 11475146 - 11474971
Alignment:
Q  27 caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc 126  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11475146 caccagattcagtaaaagctcaaactcctataggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc 11475047  T
Q  127 aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataacacaatt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11475046 aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaatt 11474971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 27 - 202
Target Start/End: Complemental strand, 11503186 - 11503011
Alignment:
Q  27 caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc 126  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503186 caccagattcagtaaaagctcaaactcctattggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc 11503087  T
Q  127 aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataacacaatt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11503086 aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaatt 11503011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 11474970 - 11474894
Alignment:
Q  127 aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctactataacacaatt 202  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  11474970 aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaatt 11474894  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 11503010 - 11502934
Alignment:
Q  127 aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctactataacacaatt 202  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  11503010 aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaatt 11502934  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 28245195 - 28245236
Alignment:
Q  161 aaatagaaacgaacaaatgacagaggctactataacacaatt 202  Q
    |||||||||| ||||||||||||||||| |||||||||||||    
T  28245195 aaatagaaacaaacaaatgacagaggctgctataacacaatt 28245236  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 22490436 - 22490477
Alignment:
Q  161 aaatagaaacgaacaaatgacagaggctactataacacaatt 202  Q
    ||||| |||||||||||||||||||||| |||||||||||||    
T  22490436 aaatacaaacgaacaaatgacagaggctgctataacacaatt 22490477  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 10123422 - 10123463
Alignment:
Q  161 aaatagaaacgaacaaatgacagaggctactataacacaatt 202  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  10123422 aaatagaaacgaacaaatgatagaggctgctataacacaatt 10123463  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 19306850 - 19306891
Alignment:
Q  161 aaatagaaacgaacaaatgacagaggctactataacacaatt 202  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  19306850 aaatagaaacgaacaaatgatagaggctgctataacacaatt 19306891  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 18330745 - 18330801
Alignment:
Q  94 agagttaacacacaatccaaaaacaaaagaatcaagatttgttacacactctaaaat 150  Q
    |||||||| |||||||  ||||||||||| ||||| ||||||| ||||| |||||||    
T  18330745 agagttaaaacacaataaaaaaacaaaagcatcaacatttgttgcacacactaaaat 18330801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 25382990 - 25382949
Alignment:
Q  161 aaatagaaacgaacaaatgacagaggctactataacacaatt 202  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  25382990 aaatagaatcgaacaaatgacagaggctgctataacacaatt 25382949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 48795569 - 48795528
Alignment:
Q  161 aaatagaaacgaacaaatgacagaggctactataacacaatt 202  Q
    |||||||||||||||||||||||||| |  ||||||||||||    
T  48795569 aaatagaaacgaacaaatgacagaggttgttataacacaatt 48795528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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