View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_562 (Length: 202)
Name: NF6864A_low_562
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_562 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 14784650 - 14784811
Alignment:
| Q |
21 |
cgaggtatttggaggcaaacataagttcaggtagagctaccaagggaaagtttcataacatcgttgacaaaattaaaagcagagtaagtggtttggaagc |
120 |
Q |
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| T |
14784650 |
cgaggtatttggaggcaaacataagtccaggtagagctaccaagggaaagtttcataacatcgttgacaaaattaaaagcagagtaagtggtttggaagc |
14784749 |
T |
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| Q |
121 |
aacaatgcttaagttttgatggcaaacttattccatctaaatcagctttgagctcttatcat |
182 |
Q |
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| T |
14784750 |
aacaatgcttgagttttgatggcaaacttacgctatctaaatcagttttgagctcttatcat |
14784811 |
T |
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Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 48899382 - 48899233
Alignment:
| Q |
25 |
gtatttggaggcaaacataagttcaggtagagctaccaagggaaagtttcataacatcgttgacaaaattaaaagcagagtaagtggtttggaagcaaca |
124 |
Q |
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| T |
48899382 |
gtatttgggggctaacattagtgcaggtagagctactaggggaaagtttcataacgtcattgacaaaattcaaaatagactaagtgg-ttggaagcaaca |
48899284 |
T |
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| Q |
125 |
atgcttaagttttgatggcaaacttattccatctaaatcagctttgagctct |
176 |
Q |
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| T |
48899283 |
atgctt-agttttgtcggtagacttactttatctaaattagttttgagctct |
48899233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 31116960 - 31116854
Alignment:
| Q |
67 |
aaagtttcataacatcgttgacaaaattaaaagcagagtaagtggtttggaagcaacaatgcttaagttttgatggcaaacttattccatctaaatcagc |
166 |
Q |
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|||||||||||||||| |||| |||||| ||| |||| ||||||| |||||||||| ||||||||||||||| | || ||||| | |||||||||||| |
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| T |
31116960 |
aaagtttcataacatcattgaaaaaattcaaaacagactaagtgg-ttggaagcaataatgcttaagttttgccgacagacttactttatctaaatcagc |
31116862 |
T |
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| Q |
167 |
tttgagct |
174 |
Q |
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|||||||| |
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| T |
31116861 |
tttgagct |
31116854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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