View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6864A_low_563 (Length: 202)
Name: NF6864A_low_563
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_563 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 35206528 - 35206363
Alignment:
| Q |
17 |
agcagagatgttaaactacataacaccggatgattaccgttgtccgatttctctggaactaatgacagatcctgtaactgtttccactggccaaacatac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35206528 |
agcagagatgttaaactacataacaccggatgattaccgttgtccgatttctctggaactaatgacagatcctgtaactgtttccactggccaaacatac |
35206429 |
T |
|
| Q |
117 |
aacagaacctcaattcaaaaatggtttaaagcaggaaacatgacatgtccaaaaacaggagaaaga |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35206428 |
aacagaacctcaattcaaaaatggtttaaagcaggaaacatgacatgtccaaaaacaggagaaaga |
35206363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 175
Target Start/End: Complemental strand, 43986190 - 43986069
Alignment:
| Q |
54 |
cgttgtccgatttctctggaactaatgacagatcctgtaactgtttccactggccaaacatacaacagaacctcaattcaaaaatggtttaaagcaggaa |
153 |
Q |
| |
|
|||||||| ||||| || ||||||||||| ||||| ||||| ||||| || || ||||| ||| | | | |||||||| | |||| |||||||||||| |
|
|
| T |
43986190 |
cgttgtccaatttcactcgaactaatgactgatccagtaacagtttcaacaggacaaacctacgatcgtgcttcaattcagacatggcttaaagcaggaa |
43986091 |
T |
|
| Q |
154 |
acatgacatgtccaaaaacagg |
175 |
Q |
| |
|
||| ||||| || |||||||| |
|
|
| T |
43986090 |
acaaaacatgccctaaaacagg |
43986069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University