View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_6 (Length: 550)
Name: NF6864A_low_6
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 108 - 541
Target Start/End: Complemental strand, 27931540 - 27931107
Alignment:
| Q |
108 |
catagaaacaacaattactcaactcttaattcttatacctatgacaccaacacaacctcttgcatcaacccttcattttcatccaattttttcaccaata |
207 |
Q |
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| T |
27931540 |
catagaaacaacaattactcaactcttaattcttatacctatgacaccagcacaacctcttgcatcaacccttcattttcatccaattttttcaccaata |
27931441 |
T |
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| Q |
208 |
attttctctctttatcatcaccttttgtgaaagatttaatatggacacttgttatcacgttgattttgagcttacccatttgctggttgttgcttctttt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27931440 |
attttctctctttatcatcaccttttgtgaaagatttaatatggacacttgttatcacgttgattttgagcttacccatttgctggttgttgcttctttt |
27931341 |
T |
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| Q |
308 |
attgaagcattacaccaaacaccttgtctacgcttcgttaccgttttttattctcataccaatttttctcaatgtttactggtttgttgcttgcactatt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27931340 |
attgaagcattacaccaaacaccttgtctacgcttcgataccgttttttattctcataccaatttttctcaatgtttactggtttgttgcttgcactatt |
27931241 |
T |
|
| Q |
408 |
aagacttcatgtagtgaaaattttcctatggtgtatagaattttggtgttggnnnnnnnnnnnnnggtgattggtgtgattgtgtggattcttgtgataa |
507 |
Q |
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| T |
27931240 |
aagacttcatgtagtgaaaattttcctatggtgtatagaattttggtgttggtttttgtttttttggtgattggtgtgattgtgtggattcttgtgataa |
27931141 |
T |
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| Q |
508 |
attggcaccgtgtggagcttactgtgagtataat |
541 |
Q |
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| T |
27931140 |
attggcaccgtgtggagcttactgtgagtataat |
27931107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 474 - 515
Target Start/End: Complemental strand, 8438614 - 8438573
Alignment:
| Q |
474 |
gtgattggtgtgattgtgtggattcttgtgataaattggcac |
515 |
Q |
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| T |
8438614 |
gtgattggtgtgattgtgtgcattcttgtgacaaattggcac |
8438573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 474 - 515
Target Start/End: Complemental strand, 8746658 - 8746617
Alignment:
| Q |
474 |
gtgattggtgtgattgtgtggattcttgtgataaattggcac |
515 |
Q |
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| T |
8746658 |
gtgattggtgtgattgtgtgcattcttgtgacaaattggcac |
8746617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 474 - 515
Target Start/End: Complemental strand, 22827252 - 22827211
Alignment:
| Q |
474 |
gtgattggtgtgattgtgtggattcttgtgataaattggcac |
515 |
Q |
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| T |
22827252 |
gtgattggtgtgattgtgtgcattcttgtgacaaattggcac |
22827211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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