View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_65 (Length: 377)
Name: NF6864A_low_65
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 24 - 361
Target Start/End: Complemental strand, 42041701 - 42041364
Alignment:
| Q |
24 |
agaacaaactgtttcttccccgatgcatcattcggaacaatacaagcttgcagctccgccaattcatcggagcctcttcgaacccgaatcattatcgaag |
123 |
Q |
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| T |
42041701 |
agaacaaactgtttcttccccgatgcatcattcggaactatacaagcttgcagctccgccaattcatcggagcctcttcgaacccgaatcattatcgaag |
42041602 |
T |
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| Q |
124 |
tttccttcttcttataagcttcttgaagaattttctgaactccacttcttccacctttgaaaggtgaattatatcggatctgtgattttgtttttgttcc |
223 |
Q |
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| T |
42041601 |
tttccttcttcttataagcttcttgaagaattttctgaactccacttcttccacctttgaaaggtgaattatatcggatctgtgattttgtttttgttcc |
42041502 |
T |
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| Q |
224 |
gattcgaagctcttcgactatgtcgccggtttgaagcatgtctactgtccattcatctgcttttgaacttcctcgtagacattcgattgataaaactttt |
323 |
Q |
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| T |
42041501 |
gattcgaagctcttcgactatgtcgccggtttgaagcatgtctactgtccattcatctgcttttgaacttcctcgtagacattcgattgataacactttt |
42041402 |
T |
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| Q |
324 |
gggtctcgggttggtgagtctgaacttgtttgtgatgt |
361 |
Q |
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| T |
42041401 |
gggtctcgggttggtgagtctgaacttgtttgtgatgt |
42041364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 47 - 227
Target Start/End: Original strand, 51725880 - 51726060
Alignment:
| Q |
47 |
tgcatcattcggaacaatacaagcttgcagctccgccaattcatcggagcctcttcgaacccgaatcattatcgaagtttccttcttcttataagcttct |
146 |
Q |
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| T |
51725880 |
tgcatcattcagaacagtacaagcttgcagctccgccaattcatcggatcctcgtcaaactcaaatcattatcgaagttttcttcttcttacacgtttct |
51725979 |
T |
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| Q |
147 |
tgaagaattttctgaactccacttcttccacctttgaaaggtgaattatatcggatctgtgattttgtttttgttccgatt |
227 |
Q |
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| T |
51725980 |
tgaagaattttctgaacgccactttttccacctttgaaaggtgaattgcattggatctgtgattttgtttttgtttcgatt |
51726060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 24848985 - 24849034
Alignment:
| Q |
228 |
cgaagctcttcgactatgtcgccggtttgaagcatgtctactgtccattc |
277 |
Q |
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| T |
24848985 |
cgaagttcttcgactatgtcaccggtttgaagcatgtctccggtccattc |
24849034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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