View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_70 (Length: 374)

Name: NF6864A_low_70
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_70
NF6864A_low_70
[»] chr4 (4 HSPs)
chr4 (30-358)||(5313554-5313886)
chr4 (157-263)||(16839429-16839535)
chr4 (164-354)||(11355130-11355322)
chr4 (45-97)||(11355384-11355436)
[»] chr1 (2 HSPs)
chr1 (155-357)||(30737674-30737880)
chr1 (118-245)||(28451574-28451701)
[»] chr6 (1 HSPs)
chr6 (49-263)||(7499954-7500168)
[»] chr5 (2 HSPs)
chr5 (49-263)||(9504983-9505197)
chr5 (30-173)||(33050399-33050542)
[»] chr2 (3 HSPs)
chr2 (157-263)||(45495640-45495746)
chr2 (157-263)||(45503382-45503488)
chr2 (49-254)||(5986896-5987101)
[»] scaffold0014 (1 HSPs)
scaffold0014 (164-263)||(62533-62632)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 358
Target Start/End: Original strand, 5313554 - 5313886
Alignment:
Q  30 gtatctggatacacgatgctcaaatcacatgacatgtaaaa-agtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataa 128  Q
    |||| |||||||||||||||||||||| |||||| |||||| ||||||||||||| |||||||||| |||||||||  ||||||||||||||||||||||    
T  5313554 gtatatggatacacgatgctcaaatcatatgacaggtaaaaaagtcttggttctctgagttagatggttcaattagtaaaaagacaagatttgcaaataa 5313653  T
Q  129 tagtatagtttgtgttaaaagaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgaga 228  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||| | ||||||||||    
T  5313654 tagtatagtttgtgttaaaggaactagtaaagtattgattcatagaaaagatggcaagaaaacatatatcactgatgtattgtatgttcaaaatatgaga 5313753  T
Q  229 agtaatctcattagtataggccaattgctgcaaaatg--tctactacgaaaatggaagcacatgctataaggg-ttttttattgcaagaatagattgatc 325  Q
    |||||||||||||||| ||||||||||||||||||||  | ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  5313754 agtaatctcattagtacaggccaattgctgcaaaatgtatatactatgaaaatggaagcacatgctacaagggtttttttattgcaagaatagattgatc 5313853  T
Q  326 ttgaaggctccattgtcaaagaagagaactttc 358  Q
    ||||||||||||||||||||||||| |||||||    
T  5313854 ttgaaggctccattgtcaaagaagaaaactttc 5313886  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 16839535 - 16839429
Alignment:
Q  157 aaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 256  Q
    |||||| |||||||||  || |||||||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  16839535 aaagtactgattcataagaaggatggcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 16839436  T
Q  257 tgcaaaa 263  Q
    |||||||    
T  16839435 tgcaaaa 16839429  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 354
Target Start/End: Complemental strand, 11355322 - 11355130
Alignment:
Q  164 tgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgctgcaaaa 263  Q
    |||||||| | ||||||||||||||||| |  ||||||| ||| |||||||| ||||| ||||  |||||||||||||||||||| || ||  |||| ||    
T  11355322 tgattcatgggaaagatggcaagaaagcttgcattactggtgtgttatatgtgccaaacatgaagagtaatctcattagtataggtcagttattgcagaa 11355223  T
Q  264 tg--tctactacgaaaatggaagcacatgctataagggttttttattgcaagaatagattgatcttgaaggctccattgtcaaagaagagaac 354  Q
     |  | ||||| ||||||||| | |||  |||| | ||||||| |  ||||||  ||||||||  | |||||||||||||||||||| |||||    
T  11355222 aggctatactatgaaaatggaggaacaaactatgatggtttttgacagcaagagaagattgattctaaaggctccattgtcaaagaaaagaac 11355130  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 11355436 - 11355384
Alignment:
Q  45 atgctcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgatt 97  Q
    ||||||||| ||||||||| |||||| ||| ||||| || |||||||||||||    
T  11355436 atgctcaaagcacatgacaggtaaaatgtcatggttttctgagttagatgatt 11355384  T

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Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 155 - 357
Target Start/End: Original strand, 30737674 - 30737880
Alignment:
Q  155 gtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaatt 254  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| | |||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  30737674 gtaaagtattgattcatagaaaaaatggcaagaaagcatgtatcattgatgtgttatatgtgccaaatatgagaagtaatctcattagtataggtcaatt 30737773  T
Q  255 gctgcaaaatg--tctactacgaaaatggaagcacatgctataaggg--ttttttattgcaagaatagattgatcttgaaggctccattgtcaaagaaga 350  Q
     |||||||| |  | | |||  || ||||||||| |  |||| ||||  |||||||||| ||| |||| |||||| |||| || || ||||||||| |||    
T  30737774 actgcaaaagggttgtgctattaagatggaagcaaaaactatgagggttttttttattggaaggataggttgatcctgaaagccccgttgtcaaagcaga 30737873  T
Q  351 gaacttt 357  Q
    |||||||    
T  30737874 gaacttt 30737880  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 28451701 - 28451574
Alignment:
Q  118 tttgcaaataatagtatagtttgtgttaaaagaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtac 217  Q
    |||||| ||||||| ||||| |||| | || ||| | ||||||||   ||||| | |||||||||||||||||||| ||| ||| |||| || ||||| |    
T  28451701 tttgcagataatagaatagtgtgtgctgaaggaattggtaaagtaccaattcacataaaagatggcaagaaagcatatatcacttatgtgttttatgtgc 28451602  T
Q  218 caaatatgagaagtaatctcattagtat 245  Q
     |||||||||||| ||||| || |||||    
T  28451601 taaatatgagaagcaatcttatgagtat 28451574  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 263
Target Start/End: Complemental strand, 7500168 - 7499954
Alignment:
Q  49 tcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagtatagtttgtgttaaaa 148  Q
    ||||||||||||||||| || || ||||||||||| || |||||||||||| |||    ||| | |||||||||| | ||| ||||||||||||   |      
T  7500168 tcaaatcacatgacatgcaagaaatcttggttctctgaattagatgattcagttaatagaaaaataagatttgcagagaatcgtatagtttgtgcagatg 7500069  T
Q  149 gaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 248  Q
    | | | | |||||| |||||||||| || |||| ||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| ||    
T  7500068 gtattgggaaagtactgattcataggaaggatgacaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattgg 7499969  T
Q  249 ccaattgctgcaaaa 263  Q
      |||| ||||||||    
T  7499968 ttaattactgcaaaa 7499954  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 49 - 263
Target Start/End: Original strand, 9504983 - 9505197
Alignment:
Q  49 tcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagtatagtttgtgttaaaa 148  Q
    ||||||||||||||||| || || ||||||||||| || |||||||||||| |||    ||| | |||||||||| | |||| |||||||||||          
T  9504983 tcaaatcacatgacatgcaagaaatcttggttctctgaattagatgattcagttaatagaaaaataagatttgcagacaatattatagtttgtgcagctg 9505082  T
Q  149 gaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 248  Q
    | | | | |||||| | |||||||| || |||| ||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| ||    
T  9505083 gtattgggaaagtactaattcataggaaggatgtcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattgg 9505182  T
Q  249 ccaattgctgcaaaa 263  Q
     ||||| || |||||    
T  9505183 tcaattactacaaaa 9505197  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 33050399 - 33050542
Alignment:
Q  30 gtatctggatacacgatgctcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataat 129  Q
    ||||||||||||| ||||||||||| |||| |||||| |||||||||||| |||  | |||||| |||||||||    ||||| |||||| ||| |||||    
T  33050399 gtatctggatacatgatgctcaaattacataacatgttaaaagtcttggtactctaaattagattattcaattaatagaaagataagattcgcagataat 33050498  T
Q  130 agtatagtttgtgttaaaagaactagtaaagtattgattcatag 173  Q
    ||||| | || |||| || ||| | |||| || |||||||||||    
T  33050499 agtatcgattatgttgaaggaaatggtaatgtgttgattcatag 33050542  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 45495746 - 45495640
Alignment:
Q  157 aaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 256  Q
    |||||| |||||||||| || |||||||||||||| |  || | |||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  45495746 aaagtactgattcataggaaggatggcaagaaagcttgcatcattgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 45495647  T
Q  257 tgcaaaa 263  Q
    |||||||    
T  45495646 tgcaaaa 45495640  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 45503488 - 45503382
Alignment:
Q  157 aaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 256  Q
    |||||| |||||||||| || |||||||||||||| |  || | |||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  45503488 aaagtactgattcataggaaggatggcaagaaagcttgcatcattgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 45503389  T
Q  257 tgcaaaa 263  Q
    |||||||    
T  45503388 tgcaaaa 45503382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 254
Target Start/End: Original strand, 5986896 - 5987101
Alignment:
Q  49 tcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagtatagtttgtgttaaaa 148  Q
    |||||||||||||||   || || ||||||||||| || |||||||||||| ||| |  ||| | |||||||||| | ||||||||||||||||     |    
T  5986896 tcaaatcacatgacagacaagaaatcttggttctctgaattagatgattcagttaacagaaaaataagatttgcagacaatagtatagtttgtgcagcta 5986995  T
Q  149 gaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 248  Q
      | | | |||||| |||||||||| || |||||||||||||| |  || |||||||| || ||||||||||| |||||||  | |||||||||||| ||    
T  5986996 atattggaaaagtactgattcataggaaggatggcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaaacagtctcattagtattgg 5987095  T
Q  249 ccaatt 254  Q
     |||||    
T  5987096 tcaatt 5987101  T

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Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 263
Target Start/End: Original strand, 62533 - 62632
Alignment:
Q  164 tgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgctgcaaaa 263  Q
    |||||||||| || |||||||||| ||| |  || |||||||| || ||||||||||| |||||||| ||||||| |||||| || |||||  |||||||    
T  62533 tgattcataggaaggatggcaagagagcctgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcagtagtattggtcaattattgcaaaa 62632  T

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