View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_71 (Length: 373)

Name: NF6864A_low_71
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_71
NF6864A_low_71
[»] chr1 (29 HSPs)
chr1 (173-367)||(50767536-50767747)
chr1 (4-172)||(20302198-20302367)
chr1 (4-172)||(51752104-51752273)
chr1 (4-172)||(13761577-13761745)
chr1 (4-172)||(51749778-51749947)
chr1 (4-144)||(6823651-6823792)
chr1 (4-172)||(10400201-10400369)
chr1 (25-164)||(16225895-16226034)
chr1 (30-172)||(47179428-47179570)
chr1 (4-139)||(28840451-28840586)
chr1 (25-172)||(47177078-47177224)
chr1 (4-139)||(15823319-15823454)
chr1 (4-139)||(28842266-28842401)
chr1 (55-172)||(6822775-6822893)
chr1 (34-172)||(23783238-23783376)
chr1 (67-173)||(20291279-20291386)
chr1 (55-144)||(16231369-16231458)
chr1 (4-139)||(13214854-13214989)
chr1 (4-139)||(3579991-3580126)
chr1 (25-69)||(23783362-23783406)
chr1 (4-115)||(41646717-41646828)
chr1 (90-172)||(47451405-47451488)
chr1 (30-119)||(30790793-30790882)
chr1 (9-65)||(28207444-28207500)
chr1 (4-120)||(39462310-39462426)
chr1 (55-139)||(49687334-49687418)
chr1 (90-139)||(38925915-38925965)
chr1 (30-79)||(13449947-13449996)
chr1 (4-52)||(47451508-47451556)
[»] chr4 (39 HSPs)
chr4 (4-170)||(51015042-51015208)
chr4 (4-172)||(11006612-11006781)
chr4 (4-172)||(9176867-9177035)
chr4 (4-164)||(37089745-37089906)
chr4 (25-172)||(16932213-16932360)
chr4 (25-174)||(22783170-22783319)
chr4 (4-164)||(24888598-24888758)
chr4 (4-172)||(9174517-9174684)
chr4 (30-174)||(16934572-16934716)
chr4 (17-172)||(36919971-36920125)
chr4 (4-170)||(22803104-22803270)
chr4 (4-172)||(38408993-38409161)
chr4 (4-172)||(5637839-5638006)
chr4 (4-175)||(36921866-36922036)
chr4 (25-172)||(22780805-22780952)
chr4 (4-139)||(22044760-22044897)
chr4 (4-172)||(3824944-3825112)
chr4 (4-135)||(31849970-31850101)
chr4 (55-172)||(7941133-7941251)
chr4 (4-115)||(11008963-11009075)
chr4 (55-172)||(11434769-11434887)
chr4 (30-172)||(18846923-18847067)
chr4 (4-120)||(5198266-5198382)
chr4 (4-139)||(48486146-48486281)
chr4 (34-139)||(9148087-9148192)
chr4 (55-139)||(22801262-22801346)
chr4 (4-118)||(24880299-24880413)
chr4 (34-139)||(52942869-52942974)
chr4 (4-85)||(22047055-22047135)
chr4 (4-118)||(619818-619932)
chr4 (4-67)||(52942818-52942881)
chr4 (4-141)||(40091786-40091923)
chr4 (4-119)||(24878836-24878951)
chr4 (89-139)||(22048492-22048542)
chr4 (4-46)||(47274647-47274689)
chr4 (30-79)||(16689331-16689380)
chr4 (30-78)||(8529012-8529060)
chr4 (4-48)||(11434873-11434917)
chr4 (4-48)||(22801232-22801276)
[»] chr2 (18 HSPs)
chr2 (4-164)||(19502382-19502542)
chr2 (4-164)||(27104523-27104683)
chr2 (8-173)||(19504720-19504885)
chr2 (25-172)||(24162604-24162752)
chr2 (25-172)||(36559211-36559358)
chr2 (4-139)||(21521066-21521201)
chr2 (34-172)||(36561539-36561677)
chr2 (25-172)||(45332528-45332675)
chr2 (4-139)||(42064264-42064399)
chr2 (4-139)||(6259186-6259321)
chr2 (55-164)||(43623968-43624077)
chr2 (4-80)||(13910415-13910491)
chr2 (4-139)||(22407780-22407915)
chr2 (25-69)||(36561488-36561532)
chr2 (55-120)||(6264546-6264611)
chr2 (54-139)||(40032468-40032553)
chr2 (4-48)||(43623938-43623982)
chr2 (34-69)||(36561518-36561553)
[»] chr3 (36 HSPs)
chr3 (4-172)||(22114674-22114842)
chr3 (32-172)||(6063866-6064006)
chr3 (25-172)||(18099560-18099707)
chr3 (4-171)||(5191374-5191541)
chr3 (25-173)||(50493675-50493823)
chr3 (25-172)||(38210067-38210214)
chr3 (43-156)||(10192401-10192513)
chr3 (31-172)||(53896613-53896754)
chr3 (23-155)||(5899476-5899608)
chr3 (43-156)||(10085481-10085593)
chr3 (4-113)||(10956396-10956505)
chr3 (41-172)||(18097291-18097422)
chr3 (55-173)||(38889756-38889875)
chr3 (23-172)||(5885983-5886133)
chr3 (23-115)||(25388654-25388746)
chr3 (4-173)||(32264412-32264581)
chr3 (55-172)||(35777163-35777280)
chr3 (4-139)||(1321194-1321329)
chr3 (4-139)||(5522984-5523119)
chr3 (55-139)||(11162924-11163008)
chr3 (4-139)||(26720301-26720436)
chr3 (4-79)||(10958692-10958767)
chr3 (57-139)||(11170178-11170260)
chr3 (55-172)||(6719532-6719651)
chr3 (89-172)||(7606880-7606963)
chr3 (4-139)||(24177032-24177167)
chr3 (55-114)||(6066195-6066254)
chr3 (4-70)||(3859350-3859416)
chr3 (4-79)||(45882752-45882827)
chr3 (124-174)||(3859315-3859365)
chr3 (4-48)||(35777266-35777309)
chr3 (30-79)||(4308676-4308725)
chr3 (4-49)||(10084762-10084807)
chr3 (4-49)||(10191682-10191727)
chr3 (4-48)||(6719502-6719546)
chr3 (4-48)||(38889861-38889905)
[»] scaffold0127 (1 HSPs)
scaffold0127 (25-172)||(12907-13054)
[»] chr6 (16 HSPs)
chr6 (4-172)||(14507546-14507716)
chr6 (4-139)||(19227780-19227915)
chr6 (25-172)||(26068735-26068882)
chr6 (4-139)||(8995288-8995423)
chr6 (4-139)||(9019735-9019870)
chr6 (25-172)||(26066464-26066611)
chr6 (25-172)||(33308685-33308832)
chr6 (25-172)||(33310954-33311101)
chr6 (25-172)||(29755132-29755279)
chr6 (4-164)||(11983400-11983558)
chr6 (4-115)||(4816639-4816749)
chr6 (23-139)||(15530512-15530628)
chr6 (4-89)||(30729199-30729284)
chr6 (30-79)||(26084818-26084867)
chr6 (55-120)||(32279845-32279910)
chr6 (4-89)||(15541511-15541596)
[»] chr5 (37 HSPs)
chr5 (25-172)||(34477485-34477632)
chr5 (4-139)||(38881878-38882013)
chr5 (55-172)||(2174680-2174797)
chr5 (4-172)||(31544798-31544966)
chr5 (25-172)||(10749505-10749652)
chr5 (23-164)||(4236378-4236519)
chr5 (4-172)||(31542442-31542610)
chr5 (25-172)||(10756960-10757107)
chr5 (25-172)||(15354918-15355065)
chr5 (25-172)||(15357194-15357341)
chr5 (55-172)||(34479855-34479972)
chr5 (55-172)||(39797849-39797966)
chr5 (4-139)||(16775930-16776065)
chr5 (55-173)||(25921874-25921993)
chr5 (25-173)||(23664833-23664981)
chr5 (25-173)||(23793606-23793754)
chr5 (25-172)||(23667109-23667256)
chr5 (25-115)||(31179807-31179897)
chr5 (4-81)||(21684832-21684909)
chr5 (55-139)||(659746-659829)
chr5 (55-172)||(38960487-38960604)
chr5 (37-117)||(659850-659929)
chr5 (4-139)||(21947803-21947935)
chr5 (74-174)||(18186489-18186589)
chr5 (55-172)||(31466379-31466496)
chr5 (55-139)||(2818729-2818813)
chr5 (36-139)||(20504316-20504419)
chr5 (4-139)||(20507833-20507968)
chr5 (108-172)||(21684905-21684969)
chr5 (74-172)||(36402747-36402845)
chr5 (30-79)||(39854317-39854366)
chr5 (30-79)||(42238047-42238096)
chr5 (31-79)||(1240171-1240219)
chr5 (23-79)||(4409890-4409946)
chr5 (56-139)||(12556325-12556408)
chr5 (124-172)||(31179885-31179933)
chr5 (4-44)||(39797956-39797996)
[»] chr8 (15 HSPs)
chr8 (25-172)||(18812668-18812815)
chr8 (25-172)||(43079347-43079494)
chr8 (33-172)||(43081722-43081861)
chr8 (4-139)||(27826815-27826950)
chr8 (4-139)||(27829126-27829261)
chr8 (4-139)||(12517397-12517532)
chr8 (25-172)||(18810483-18810630)
chr8 (4-172)||(44720617-44720785)
chr8 (4-164)||(14807556-14807716)
chr8 (4-164)||(15067785-15067945)
chr8 (34-139)||(28251988-28252093)
chr8 (4-172)||(15072506-15072674)
chr8 (55-144)||(3886322-3886412)
chr8 (55-139)||(4423868-4423952)
chr8 (4-69)||(28251937-28252002)
[»] chr7 (20 HSPs)
chr7 (4-172)||(3878322-3878490)
chr7 (25-172)||(1047356-1047503)
chr7 (25-172)||(2935070-2935217)
chr7 (25-172)||(9027540-9027687)
chr7 (25-172)||(22136878-22137025)
chr7 (25-172)||(40551905-40552052)
chr7 (4-173)||(27306600-27306768)
chr7 (25-172)||(22107867-22108014)
chr7 (25-172)||(40549627-40549774)
chr7 (55-172)||(40837144-40837261)
chr7 (4-139)||(35412-35547)
chr7 (4-139)||(44347-44482)
chr7 (4-135)||(25542317-25542448)
chr7 (55-172)||(26804345-26804462)
chr7 (4-139)||(18567396-18567531)
chr7 (4-139)||(31435418-31435553)
chr7 (58-139)||(1049699-1049780)
chr7 (4-48)||(26804448-26804492)
chr7 (30-79)||(40946167-40946216)
chr7 (4-85)||(42006404-42006484)
[»] scaffold0250 (1 HSPs)
scaffold0250 (4-131)||(2670-2797)
[»] scaffold0140 (2 HSPs)
scaffold0140 (25-172)||(21915-22062)
scaffold0140 (25-172)||(24190-24337)
[»] scaffold0025 (2 HSPs)
scaffold0025 (4-164)||(69665-69825)
scaffold0025 (55-164)||(73427-73536)
[»] scaffold0472 (1 HSPs)
scaffold0472 (25-172)||(5927-6074)
[»] scaffold0068 (2 HSPs)
scaffold0068 (4-81)||(29001-29078)
scaffold0068 (108-172)||(28941-29005)
[»] scaffold0131 (1 HSPs)
scaffold0131 (4-171)||(14768-14936)
[»] scaffold0339 (1 HSPs)
scaffold0339 (4-46)||(3872-3914)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 173 - 367
Target Start/End: Complemental strand, 50767747 - 50767536
Alignment:
Q  173 ttaattaacttttatatagttagagaaagatgtttgtgaatttacnnnnnnnctactaatgtaacatgttatgacggtatcccttgtga----------- 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||| |||||||||||||||||||||||||||||||||               
T  50767747 ttaattaacttttatatagttagagaaagatgtttgtgaatttacaaaaaaactagtaatgtaacatgttatgacggtatcccttgtgaaggcgtcctga 50767648  T
Q  262 ------tatttttcatgaatatttcgtccttattccatttgtcttttgttttcatctgtacaatttaaaaatgcaccatctatctcattccattcattca 355  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50767647 gagagatatttttcatgaatatttcgtccttattccatttgtcttttgttttcatctgtacaatttaaaaatgcaccatctatctcattccattcattca 50767548  T
Q  356 tatttcattatc 367  Q
    ||||||||||||    
T  50767547 tatttcattatc 50767536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 20302367 - 20302198
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca-aaaactgaaacct 102  Q
    ||||||||| ||||||| || |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  20302367 aatatgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacaatttttccagtgccttgcctcaaaaaactgaaacct 20302268  T
Q  103 ccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||||||||||||||||||||||| |||| ||||| |||| ||||||||||| ||||||| |||||||    
T  20302267 ccatcgtgccacgttgccttgccatcatgccgcgattctgcagaaatctgattttaagttaactctcaca 20302198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 51752273 - 51752104
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca-aaaactgaaacct 102  Q
    |||| |||||||||||| || |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51752273 aatacgtttatgttattcgccgccagcgcaccatcgtgccacgatgcggccccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacct 51752174  T
Q  103 ccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    ||||||||||||||||||   |||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  51752173 ccatcgtgccacgttgcccaaccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 51752104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 13761745 - 13761577
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||| || |||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13761745 aatacgtttctgttattcgccgccagcacaccatcgtgccgcgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 13761646  T
Q  104 catcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||| ||||||||||||  ||||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  13761645 catcatgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 13761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 51749947 - 51749778
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca-aaaactgaaacct 102  Q
    |||| |||| ||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51749947 aatacgtttctgttattcgccgccagcgcactatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacct 51749848  T
Q  103 ccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    ||||||| ||||||||||   |||||||||||||||| |||| |||  |||||| ||||||| |||||||    
T  51749847 ccatcgtaccacgttgcccaaccatcgtgccacgattctgcagaaacttgattttaagttaactctcaca 51749778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 6823792 - 6823651
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca-aaaactgaaacct 102  Q
    |||| |||||||||||| || |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  6823792 aatacgtttatgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcatgccacgatttttccagtgccttgcctcaaaaaactgaaacct 6823693  T
Q  103 ccatcgtgccacgttgccttgccatcgtgccacgattatgca 144  Q
    ||||||||||||||||||   ||||||||||| |||| ||||    
T  6823692 ccatcgtgccacgttgcccaaccatcgtgccatgattctgca 6823651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 10400201 - 10400369
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||  |||||||||    
T  10400201 aatacgtttatgttatttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatatttccagtgctttgcctc-aaacttgaaacctc 10400299  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||||||  || ||||||||||||||  ||| ||| ||||||| ||||||| |||||||    
T  10400300 caatcgtgccacgttgcccagcaatcgtgccacgattccgcagaaacctgattttaagttaactctcaca 10400369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 16226034 - 16225895
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||   |    
T  16226034 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccaac 16225935  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaa 164  Q
    | ||||||||||||| |||| ||| ||||||| |||||||    
T  16225934 cgtcgtgccacgattctgcagaaacctgattttaagttaa 16225895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 47179570 - 47179428
Alignment:
Q  30 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcg 129  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||  ||||||| ||||||||||||||||||||||||  ||| |||    
T  47179570 cgcaccatcgtgccacgatgagaccccatcgtgccacgattttttcagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagccgtcg 47179471  T
Q  130 tgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||||||| |||| ||| ||||||| ||||||| |||||||    
T  47179470 tgccacgattctgcagaaacctgattttaagttaactctcaca 47179428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 28840586 - 28840451
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || ||||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||    
T  28840586 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacaatttttccagtaccttgcct-aaaaactgaaacctc 28840488  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | |||||||||||||||||||||||||||||||||||    
T  28840487 caatcgtgccacgttgccttgccatcgtgccacgatt 28840451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 47177224 - 47177078
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||  |     
T  47177224 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgtcttgcc-caaaaactaaaacctccatcgtgccacgttgcccagt 47177126  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  47177125 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 47177078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 15823454 - 15823319
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||  |||||||||    
T  15823454 aatatgtttctgttatttgctgctagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttctagtgctttgcctc-aaacttgaaacctc 15823356  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | ||||||||||||||||  |||||||||||||||||    
T  15823355 caatcgtgccacgttgcccagccatcgtgccacgatt 15823319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 28842401 - 28842266
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || |||||||   ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  28842401 aatatgtttctgtttttcgctgccaggacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtaccttgcct-aaaaactgaaacctc 28842303  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | |||||||||||| ||||||||||||||||||||||    
T  28842302 caatcgtgccacgtagccttgccatcgtgccacgatt 28842266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 6822893 - 6822775
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaa-ctgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctga 153  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||| |||| ||| ||||    
T  6822893 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctga 6822794  T
Q  154 tttgaagttaaatctcaca 172  Q
    ||| ||||||| |||||||    
T  6822793 ttttaagttaactctcaca 6822775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 34 - 172
Target Start/End: Complemental strand, 23783376 - 23783238
Alignment:
Q  34 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgcc 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||  |||||||    
T  23783376 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagctgtcgtgcc 23783277  T
Q  134 acgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||| |||| ||| ||||||| ||||||| |||||||    
T  23783276 acgattgtgcagaaacctgattttaagttaactctcaca 23783238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 20291386 - 20291279
Alignment:
Q  67 gatttttccagtgccttgcctcaaaaa-ctgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaa 165  Q
    ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||     
T  20291386 gatttttccagtgccatgcctcaaaaaactgaaacctccaccgtgccacgttgccttgccatcgtgccacgattctgcagaaatctgattttaagttaac 20291287  T
Q  166 tctcacat 173  Q
    ||||||||    
T  20291286 tctcacat 20291279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 16231458 - 16231369
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgca 144  Q
    ||||||||||||||||||||||||| ||||||  ||||||| ||||||||||||||||||||||||  ||| ||||||||||||| ||||    
T  16231458 ccatcgtgccacgatttttccagtgtcttgcccaaaaaactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgca 16231369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 13214989 - 13214854
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||||||||||| | ||||||||||||||| ||| | |||||| ||||||||    ||||||| |||||||| ||||||||||||||    
T  13214989 aatacgtttttgttatttgctgccaacacaccatcgtgccacgttgcaatcccatcatgccacgaaaaatccagtgacttgcctc-aaaactgaaacctc 13214891  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | ||||||||||||||||   ||||||||||||||||    
T  13214890 caatcgtgccacgttgcccaaccatcgtgccacgatt 13214854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 3579991 - 3580126
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| ||||||| |||| || |||| ||||||||||||||||| ||| | |||| ||| |||||||||||||| || |||||||| | ||||||||| ||    
T  3579991 aatacgtttatgatattcgccgccagcgcaccatcgtgccacgttgcaatcccaccgtaccacgatttttccaatgacttgcctc-ataactgaaacatc 3580089  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | || ||| ||||||||| ||| ||||||||||||||    
T  3580090 caattgtgtcacgttgccctgcaatcgtgccacgatt 3580126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 23783406 - 23783362
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgat 69  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  23783406 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgat 23783362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 41646828 - 41646717
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| ||||||| |||||||  |||||||||||||||| ||| | |||| ||||||||||    ||||||| |||||||| ||||||||||||||    
T  41646828 aatatgtttctgttattcgctgccagtgcaccatcgtgccacgttgcaatcccaccgtgccacgaaaaatccagtgacttgcctc-aaaactgaaacctc 41646730  T
Q  104 -catcgtgccacg 115  Q
      |||||||||||    
T  41646729 taatcgtgccacg 41646717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 47451488 - 47451405
Alignment:
Q  90 aaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatta-tgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||||||||||||| ||||||||| |||||  |||||||||||||||||  |||| ||||||||||||||||||| |||||||    
T  47451488 aaaactgaaacctccaatcgtgccacattgcccagccatcgtgccacgatttctgca-aaatctgatttgaagttaactctcaca 47451405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 30790793 - 30790882
Alignment:
Q  30 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgc 119  Q
    ||||||||||||||||  ||||| |||||||||||||| ||||||||||| ||||| || | ||||||||| ||| |||||||||| ||||    
T  30790793 cgcaccatcgtgccacattgcgatcccatcgtgccacgttttttccagtgacttgcttc-ataactgaaacatccaatcgtgccacattgc 30790882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 28207444 - 28207500
Alignment:
Q  9 gtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgcca 65  Q
    |||||||||||| || |||| ||||||||||||||||| || |||||||||||||||    
T  28207444 gtttatgttattcgccgccagcgcaccatcgtgccacgttgtgaccccatcgtgcca 28207500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 39462426 - 39462310
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| |||||||  |||| | ||||||||||||||||  ||| | |||||||||||||||    |||| || |||||||| ||||||||||||||    
T  39462426 aatacgtttctgttattcactgcaagcgcaccatcgtgccacattgcaatcccatcgtgccacgaaaaatccactgacttgcctc-aaaactgaaacctc 39462328  T
Q  104 -catcgtgccacgttgcc 120  Q
      ||||||||||||||||    
T  39462327 taatcgtgccacgttgcc 39462310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 49687418 - 49687334
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    ||||||||||||||    ||||||| |||||||||||| |||||||||||| | |||||||||||||  |||||| ||||||||||    
T  49687418 ccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaacctccaattgtgccacgttgcccagccatcatgccacgatt 49687334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 38925915 - 38925965
Alignment:
Q  90 aaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    |||||||||||||||| |||||||||||||||  |||||||| ||||||||    
T  38925915 aaaactgaaacctccaatcgtgccacgttgcccagccatcgtaccacgatt 38925965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 13449947 - 13449996
Alignment:
Q  30 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 79  Q
    |||||||||||| |||||| ||| || |||||| ||||||||||||||||    
T  13449947 cgcaccatcgtggcacgattcgatccaatcgtggcacgatttttccagtg 13449996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 47451556 - 47451508
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcga 52  Q
    |||| |||| ||||||| |||| || |||||||||||||||||||||||    
T  47451556 aatacgtttctgttattcgctgtcagcgcaccatcgtgccacgatgcga 47451508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 51015208 - 51015042
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  51015208 aatatgtttctgttattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacaatttttccagtgccttgcctaaaaaactgaaacctc 51015109  T
Q  104 catcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctca 170  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||||||||| ||||||| |||||    
T  51015108 catcgtgccacgttgccttgccatcatgccacgattctgcagaaatctgattttaagttaactctca 51015042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 11006612 - 11006781
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  11006612 aatatgtttctgttttttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaattgaaacctc 11006711  T
Q  104 catcgtgccacgttgccttgccatcgtgccacgattatgcat-aaatctgatttgaagttaaatctcaca 172  Q
    |||||||||||||||||  || |||||||||||||| ||||| ||| ||||||| ||||||| |||||||    
T  11006712 catcgtgccacgttgcccagcgatcgtgccacgattctgcataaaacctgattttaagttaactctcaca 11006781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 9176867 - 9177035
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| ||  |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  9176867 aatatgtttctgtttttccctgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctc 9176966  T
Q  104 catcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    ||||||||||||||||||  || ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  9176967 catcgtgccacgttgcctaaccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 9177035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 37089745 - 37089906
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||| |||| ||    
T  37089745 aatacgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctcacctaaaaaactaaaacatc 37089844  T
Q  104 -catcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaa 164  Q
     |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  37089845 tcatcgtgccacgttgccttgccatcgtgccacgattctgcagaaatctgattttaagttaa 37089906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 16932213 - 16932360
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  16932213 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 16932312  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  16932313 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 16932360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 22783170 - 22783319
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  22783170 gccagcgcaccatcgtgccacgatgagaccccatcgtgccatgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 22783269  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcacatt 174  Q
     ||||| |||||||| |||| ||| ||||||| ||||||| |||||||||    
T  22783270 tatcgtaccacgattctgcagaaacctgattttaagttaactctcacatt 22783319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 24888758 - 24888598
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  24888758 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 24888660  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaa 164  Q
    | ||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| |||||||    
T  24888659 caatcgtgccacgttgcctagccatcgtgccacaattctgcagaaatctgattttaagttaa 24888598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 9174517 - 9174684
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| ||  |||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||| |||||||    
T  9174517 aatatgtttctgtttttccctgccagcgcaccatcgtgccacgatgagaccccatcgtgccatgatttttccagtgccttgcctaataaactaaaacctc 9174616  T
Q  104 catcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||||| ||||||||| ||| ||||||||||||| ||||  || ||||||| ||||||| |||||||    
T  9174617 catcgtgctacgttgcctagccgtcgtgccacgattctgca-gaacctgattttaagttaactctcaca 9174684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 30 - 174
Target Start/End: Original strand, 16934572 - 16934716
Alignment:
Q  30 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcg 129  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||  ||| |||    
T  16934572 cgcaccatcgtgccaggatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccatgttgcccagccgtcg 16934671  T
Q  130 tgccacgattatgcataaatctgatttgaagttaaatctcacatt 174  Q
    |||||||||| |||| ||| ||||||| ||||||| |||||||||    
T  16934672 tgccacgattctgcagaaacctgattttaagttaactctcacatt 16934716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 36919971 - 36920125
Alignment:
Q  17 tatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacg 115  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |||||||||||    
T  36919971 tattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgacttgcctc-aaaattgaaacctccaatcgtgccacg 36920069  T
Q  116 ttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||  ||||||||||||||||| ||||  || ||||||| ||||||| |||||||    
T  36920070 ttgcccagccatcgtgccacgattttgca-gaacctgattttaagttaactctcaca 36920125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 22803104 - 22803270
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||    
T  22803104 aatacgtttttgttattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgagccacgatttttccagtgcctttcctc-aaaactgaaacctc 22803202  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctca 170  Q
    | ||||||||||||||||  |||||||| |||||||| |  | |||| |||||| ||||||| |||||    
T  22803203 caatcgtgccacgttgcccagccatcgtaccacgattctatagaaatttgattttaagttaactctca 22803270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 38409161 - 38408993
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  38409161 aatatgtttctgtttttcgccgccaacgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 38409063  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||| ||||  || |||||||||||||| |||| |||||| |||| ||||||| |||||||    
T  38409062 caatcgtgccacgatgcccagcaatcgtgccacgattctgcagaaatctaattttaagttaactctcaca 38408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 5637839 - 5638006
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| |||| || ||||||| | ||||||| ||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||||||||||    
T  5637839 aatacgtttctgtttttcgctgccagctcaccatcatgccacgatgcgatcccatcgtgacatgatttttccagtgccttgcctc-aaaactgaaacctc 5637937  T
Q  104 catcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||||||||||||||  || ||||||||||||||  ||| ||| ||||||| ||||||| |||||||    
T  5637938 catcgtgccacgttgcccagcaatcgtgccacgattccgcagaaacctgattttaagttaactctcaca 5638006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 175
Target Start/End: Original strand, 36921866 - 36922036
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||| |||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  36921866 aatacgtttctgttattcgctgccaatgcaccatcgtgccacaatgcgaccccatcgtgccacgatttttccagtgacttgcctc-aaaactgaaacctc 36921964  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcacatta 175  Q
    | ||||||||| ||||||  |||||||| |||||||| ||||  || ||||||| ||||||| ||||||||||    
T  36921965 caatcgtgccatgttgcccagccatcgtaccacgattttgca-gaacctgattttaagttaactctcacatta 36922036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 22780805 - 22780952
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  22780805 gccagcgcaccatcgtgccacaatgagaccccatcgtgccatgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 22780904  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
     ||||| |||||||| |||| ||| ||||||| ||||||| |||||||    
T  22780905 tatcgtaccacgattctgcagaaacctgattttaagttaactctcaca 22780952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 22044760 - 22044897
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctc--aaaaactgaaacc 101  Q
    ||||||||| |||| ||  |||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  22044760 aatatgtttctgtttttccctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgccttgcctcaaaaaaaatgaaacc 22044859  T
Q  102 tccatcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    ||||||||||||||||||| | | ||||||||||||||    
T  22044860 tccatcgtgccacgttgcccttcaatcgtgccacgatt 22044897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 3824944 - 3825112
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||| |  |||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||||||    
T  3824944 aatacgtttctgttattcgtcgccaacgcaccatcgtgccacgatgcgaccccattgtgccatgatttttccagtgctttgcctc-aaaactgaaacctc 3825042  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||| ||||||  ||||||||| ||||||| |||| ||| ||||||| ||||||| |||||||    
T  3825043 caatcgtgccatgttgcccagccatcgtgtcacgattctgcagaaacctgattttaagttaactctcaca 3825112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 31849970 - 31850101
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||    
T  31849970 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccaagatttttccagtgccttgcc-ccaaaactgaaacctc 31850068  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccac 135  Q
    | ||||||||||||||||  || ||||||||||    
T  31850069 caatcgtgccacgttgcccagcaatcgtgccac 31850101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 7941251 - 7941133
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaa-ctgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctga 153  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||| |||| ||| ||||    
T  7941251 ccatcgtgccaccatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctga 7941152  T
Q  154 tttgaagttaaatctcaca 172  Q
    ||| ||||||| |||||||    
T  7941151 ttttaagttaactctcaca 7941133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 11008963 - 11009075
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcct-caaaaactgaaacct 102  Q
    ||||||||| |||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||    
T  11008963 aatatgtttctgttttttgctgccagtgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaaattgaaacct 11009062  T
Q  103 ccatcgtgccacg 115  Q
    |||| ||||||||    
T  11009063 ccattgtgccacg 11009075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 11434887 - 11434769
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaa-ctgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctga 153  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| |||| ||| ||||    
T  11434887 ccatcgtgccacgatttttccagtgtcttgcctcaaaaaactgaaacctccatcgtgccacgttgcccagccatcgtaccacgattctgcagaaacctga 11434788  T
Q  154 tttgaagttaaatctcaca 172  Q
    ||| ||||||| |||||||    
T  11434787 ttttaagttaactctcaca 11434769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 18847067 - 18846923
Alignment:
Q  30 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatc 128  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| | ||   | |||    
T  18847067 cgcaccatcgtgccacgatgcgaccccatcgtaccacgatttttccagtaccttgcctc-aaaactgaaacctccaatcgtgccacgattcccaacaatc 18846969  T
Q  129 gtgccacgattatgc--ataaatctgatttgaagttaaatctcaca 172  Q
    ||||||||||| |||  | ||||||||||| ||||||| |||||||    
T  18846968 gtgccacgattctgcagaaaaatctgattttaagttaactctcaca 18846923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 5198382 - 5198266
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||| || |||||||||||||||||||||||| || ||||||| |||  ||||| |||    
T  5198382 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgtgatcccatcgtgccacgatttttccagagctttgcctc-aaacttgaaatctc 5198284  T
Q  104 c-atcgtgccacgttgcc 120  Q
    | ||||||||||||||||    
T  5198283 caatcgtgccacgttgcc 5198266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 48486281 - 48486146
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||| ||||||| |||||||| |||||||  || ||||||||||||||||||    ||||||| |||||||| ||||||||||||||    
T  48486281 aatacgtttctgttattcgctgccagcgcaccattgtgccacattgtgaccccatcgtgccacgaaaaatccagtgacttgcctc-aaaactgaaacctc 48486183  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | |||||||||||||||   |||||||||||||||||    
T  48486182 caatcgtgccacgttgctcagccatcgtgccacgatt 48486146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 9148192 - 9148087
Alignment:
Q  34 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgc 132  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||  |||||||||| |||| |||||||||||  || ||||| |    
T  9148192 ccatcgtgccacgatgcaaccccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctccaatcgcgccacgttgcccagcaatcgtac 9148094  T
Q  133 cacgatt 139  Q
    |||||||    
T  9148093 cacgatt 9148087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 22801262 - 22801346
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||   ||||||||||||||||    
T  22801262 ccatcgtgccacgatttttccagttccttgcctc-aaaactgaaacctccaatcgtgtcacgttgcccaaccatcgtgccacgatt 22801346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 24880413 - 24880299
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||| ||||||| ||||||||||||||||| ||| | ||||||||||| |||    ||||||| |||||||| ||||||||||||||    
T  24880413 aatacgtttctgttattcgctgccagcgcaccatcgtgccacgttgcaatcccatcgtgccgcgaaaaatccagtgacttgcctc-aaaactgaaacctc 24880315  T
Q  104 ca-tcgtgccacgttg 118  Q
    || |||||||||||||    
T  24880314 cattcgtgccacgttg 24880299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 52942869 - 52942974
Alignment:
Q  34 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgc 132  Q
    ||||||||||||| || ||||||||||||||||||  | | ||||| |||||||| ||| ||||||||||| ||||||||||||||||   |||||||||    
T  52942869 ccatcgtgccacgttgtgaccccatcgtgccacgaaatattcagtgacttgcctc-aaagctgaaacctccaatcgtgccacgttgcccaaccatcgtgc 52942967  T
Q  133 cacgatt 139  Q
    |||||||    
T  52942968 cacgatt 52942974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 22047055 - 22047135
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 85  Q
    ||||||||| |||| ||  |||||| | ||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  22047055 aatatgtttctgtttttccctgccagcacaccatcgtgccacgatgcgatcccatcgtgcca-gatttttccagtgccttgc 22047135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 619818 - 619932
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| ||||||| || |||| |||||||| |||||||| |||||||||||||||||||||    |||| || |||||||| ||||||||||| ||    
T  619818 aatatgtttctgttattcgccgccagcgcaccattgtgccacgttgcgaccccatcgtgccacgaaaaatccaatgacttgcctc-aaaactgaaacatc 619916  T
Q  104 c-atcgtgccacgttg 118  Q
    | || |||||||||||    
T  619917 caattgtgccacgttg 619932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 52942818 - 52942881
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacg 67  Q
    ||||||||||||||||| ||||||| |||| |||||||||||| || |||||||||||||||||    
T  52942818 aatatgtttatgttattcgctgccagcgcatcatcgtgccacgttgtgaccccatcgtgccacg 52942881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 40091786 - 40091923
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| ||||| |||||| |||| ||  ||||||||||| |||| |||||||||||| || ||||||||||||| || ||| | || |||||||||| |||    
T  40091786 aatacgtttacgttattcgctgtcagtgcaccatcgtgtcacgttgcgaccccatcatggcacgatttttccaatggcttacttc-aaaactgaaatctc 40091884  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgattat 141  Q
    | ||||||||||||| ||   ||| ||||||||||||||    
T  40091885 caatcgtgccacgttacccaaccaccgtgccacgattat 40091923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 24878951 - 24878836
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||| | ||||| || |||||||||||||| ||| | |||||||||||||||    ||||||| ||||| || ||||||||||||||    
T  24878951 aatacgtttctgttattcgatgccagcgtaccatcgtgccacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcgtc-aaaactgaaacctc 24878853  T
Q  104 c-atcgtgccacgttgc 119  Q
    | |||||||||||||||    
T  24878852 caatcgtgccacgttgc 24878836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 22048492 - 22048542
Alignment:
Q  89 aaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    |||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  22048492 aaaaactgaaacctccatcgtgccacgttgcccttcaatcgtgccacgatt 22048542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 47274689 - 47274647
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacg 46  Q
    |||| |||||||||||| ||||||| |||||||||||||||||    
T  47274689 aatacgtttatgttattcgctgccatcgcaccatcgtgccacg 47274647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 16689331 - 16689380
Alignment:
Q  30 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 79  Q
    ||||||||||||||||| |||||   ||||||| ||||||||||||||||    
T  16689331 cgcaccatcgtgccacgttgcgatttcatcgtggcacgatttttccagtg 16689380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 8529060 - 8529012
Alignment:
Q  30 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagt 78  Q
    |||||||||||| ||||||||| |  ||||||| |||||||||||||||    
T  8529060 cgcaccatcgtggcacgatgcggcttcatcgtggcacgatttttccagt 8529012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 11434917 - 11434873
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 48  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||    
T  11434917 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgat 11434873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 22801232 - 22801276
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 48  Q
    |||| |||| ||||||||||||||  |||||||||||||||||||    
T  22801232 aatacgtttctgttatttgctgccggcgcaccatcgtgccacgat 22801276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 6e-62; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 19502382 - 19502542
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| ||||||| |  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19502382 aatatgtttctgttattcgtcgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctc 19502481  T
Q  104 catcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaa 164  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||||    
T  19502482 catcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaa 19502542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 27104683 - 27104523
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||||||||||||| ||  |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27104683 aatatgtttatgtttttccctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 27104584  T
Q  104 catcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaa 164  Q
    ||||||||||||||||| | | |||||||||||||| |||| ||||||||||| |||||||    
T  27104583 catcgtgccacgttgcccttcaatcgtgccacgattctgcagaaatctgattttaagttaa 27104523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 19504720 - 19504885
Alignment:
Q  8 tgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatc 107  Q
    ||||| ||||||| |  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||    
T  19504720 tgtttctgttattcgtcgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaattaaaacctccatc 19504819  T
Q  108 gtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcacat 173  Q
    ||||||||||||||||||||||||||| |||| |||  ||| ||||||| ||||||| | ||||||    
T  19504820 gtgccacgttgccttgccatcgtgccatgattctgctgaaacctgattttaagttaactttcacat 19504885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 24162604 - 24162752
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctc-aaaaactgaaacctccatcgtgccacgttgccttg 123  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       
T  24162604 gccagcgcacaatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccaa 24162703  T
Q  124 ccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||| ||||||||||| |||| |||  |||||| ||||||| |||||||    
T  24162704 ccattgtgccacgattctgcagaaacttgattttaagttaactctcaca 24162752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 36559211 - 36559358
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  36559211 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 36559310  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  36559311 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 36559358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 21521066 - 21521201
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||| || ||||||||||||||    
T  21521066 aatacgtttatgttattcgctgccagcgcaccatcgtgccacgttgcgatcccatcgtggcacgatttttccagtggcttgcttc-aaaactgaaacctc 21521164  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | ||||||||||||||||  |||||||||||||||||    
T  21521165 caatcgtgccacgttgcccagccatcgtgccacgatt 21521201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 34 - 172
Target Start/End: Original strand, 36561539 - 36561677
Alignment:
Q  34 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgcc 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||  |  |||  ||| |||||||    
T  36561539 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgtgaagcccagccgtcgtgcc 36561638  T
Q  134 acgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||| |||| ||| ||||||| ||||||| |||||||    
T  36561639 acgattgtgcagaaacctgattttaagttaactctcaca 36561677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 45332528 - 45332675
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  45332528 gccagcgcaccatcgtgccacgatgtgaccccatcgttccacgatttttccagttccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 45332627  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  45332628 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 45332675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 42064399 - 42064264
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  42064399 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgtgatcccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 42064301  T
Q  104 ca-tcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    || |||| ||||||||||  || ||||||||||||||    
T  42064300 cagtcgtaccacgttgcccagcaatcgtgccacgatt 42064264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 6259186 - 6259321
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||||||  | |||| |||||||||||| |||| ||||| |||||||||||||||||||||||||| ||| |||| ||||||||||| ||    
T  6259186 aatatgtttctgttattcaccgccagcgcaccatcgtgtcacgttgcgatcccatcgtgccacgatttttccagtgactttcctc-aaaactgaaacatc 6259284  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | || ||||||||||||   |||||||||||||||||    
T  6259285 caatagtgccacgttgcacagccatcgtgccacgatt 6259321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 55 - 164
Target Start/End: Original strand, 43623968 - 43624077
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctga 153  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| ||||||  |||||||||||| |||| |||| ||| ||||    
T  43623968 ccatcgtgccacgattttttcagtgccttgcctc-aaaactgaaacctccaatcgtgccatgttgcccagccatcgtgccatgattctgcagaaacctga 43624066  T
Q  154 tttgaagttaa 164  Q
    ||| |||||||    
T  43624067 ttttaagttaa 43624077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 13910415 - 13910491
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgc 80  Q
    ||||||||| |||| || ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13910415 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacaatgcgaccccatcgtgccacgatttttccagtgc 13910491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 22407780 - 22407915
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||| ||||||| ||||||||||||||||| || || ||||||||||||| |||||| || || |||||||| ||||||||||| ||    
T  22407780 aatacgtttctgttattcgctgccaacgcaccatcgtgccacgttgtgatcccatcgtgccacaattttttcactgacttgcctc-aaaactgaaacatc 22407878  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | ||||||||| ||| || | | ||||||||||||||    
T  22407879 caatcgtgccatgttacccttcaatcgtgccacgatt 22407915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 36561488 - 36561532
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgat 69  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  36561488 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgat 36561532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 6264546 - 6264611
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcc 120  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||| ||| ||| ||||||||||||    
T  6264546 ccatcgtgccacgatttttccagtgacttgcctc-aaaactgaaacatccaatcatgccacgttgcc 6264611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 40032468 - 40032553
Alignment:
Q  54 cccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    |||||||||||||||    ||||||| |||| ||||||| |||||||||||| |||||||||||||||  |||||||||||||||||    
T  40032468 cccatcgtgccacgaaaaatccagtgacttgtctcaaaa-ctgaaacctccaatcgtgccacgttgcccagccatcgtgccacgatt 40032553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 43623938 - 43623982
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 48  Q
    |||| |||||||||||||||||||| |||||||||||||||||||    
T  43623938 aatacgtttatgttatttgctgccagcgcaccatcgtgccacgat 43623982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 36561518 - 36561553
Alignment:
Q  34 ccatcgtgccacgatgcgaccccatcgtgccacgat 69  Q
    ||||||||||||||||||||||||||||||||||||    
T  36561518 ccatcgtgccacgatgcgaccccatcgtgccacgat 36561553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 9e-55; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 22114674 - 22114842
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||| || |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22114674 aatacgtttctgttattcgccgccatcgcaccatcgtgccacgatgcgaccccatcgtgccacaatttttccagtgccttgcctcaaaaactgaaacctc 22114773  T
Q  104 catcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||||||||||||||   |||||||||||||||| | || ||| ||||||| ||||||| |||||||    
T  22114774 catcgtgccacgttgcccaaccatcgtgccacgattctacagaaacctgattttaagttaactctcaca 22114842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 32 - 172
Target Start/End: Original strand, 6063866 - 6064006
Alignment:
Q  32 caccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtg 131  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||| |||||||||| ||||||||||||||||||||||||    
T  6063866 caccatcgtgccacgatgcgaccccatcgtgccacgattttttcagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtg 6063965  T
Q  132 ccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||||| |||||||| ||||||| ||||||| |||||||    
T  6063966 ccacgattctgcataaacctgattttaagttaattctcaca 6064006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 18099560 - 18099707
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttg 123  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||  |    
T  18099560 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgtcttgcctc-aaaactgaaacctccaatcgtgccacgttgcccag 18099658  T
Q  124 ccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  18099659 ccatcgtgccacgattttgcagaaacctgattttaagttaactctcaca 18099707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 5191541 - 5191374
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  5191541 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgagatcccatcgtgccacgatttttccagtaccttgcctc-aaaactgaaacctc 5191443  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcac 171  Q
    | ||||||||||| ||||  || |||||||||||||| |||| ||||||||||| ||||||| ||||||    
T  5191442 caatcgtgccacgatgcccagcaatcgtgccacgattctgcagaaatctgattttaagttaactctcac 5191374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 50493823 - 50493675
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  50493823 gccagcgcaccatcgtgccacgatgagactccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 50493724  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcacat 173  Q
     |||||||||||||| |||| ||| ||||||| ||||||| ||||||||    
T  50493723 tatcgtgccacgattctgcagaaacctgattttaagttaactctcacat 50493675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 38210214 - 38210067
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  38210214 gccagcgcactatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 38210115  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  38210114 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 38210067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 10192401 - 10192513
Alignment:
Q  43 cacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatg 142  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||  |    
T  10192401 cacgatgcgatcccatcgtgccacgatttttccagtgccttgcctcaaaa-ctgaaacctccatcgtgccacgttgccttgcgatcgtgccacgattccg 10192499  T
Q  143 cataaatctgattt 156  Q
    ||||||||||||||    
T  10192500 cataaatctgattt 10192513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 53896613 - 53896754
Alignment:
Q  31 gcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgt 130  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||  ||||||| ||||||||||||||||||||||||  || |||||    
T  53896613 gcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtaccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagcaatcgt 53896712  T
Q  131 gccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    ||||||||| |||| ||| ||||||| ||||||| |||||||    
T  53896713 gccacgattctgcagaaacctgattttaagttaactctcaca 53896754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 5899608 - 5899476
Alignment:
Q  23 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgcctt 122  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |    
T  5899608 ctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccatgatttttccagtgccttgcctaaaaaactaaaacatccatcgtgccacgttgccct 5899509  T
Q  123 gccatcgtgccacgattatgcataaatctgatt 155  Q
     | ||||||||| ||||||||| ||| ||||||    
T  5899508 tcaatcgtgccatgattatgcagaaacctgatt 5899476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 10085481 - 10085593
Alignment:
Q  43 cacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatg 142  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||  |    
T  10085481 cacgatgtgatcccatcgtgccacgatttttccagtgccttgcctcaaaa-ctgaaacctccatcgtgccacgttgccttgcgatcatgccacgattccg 10085579  T
Q  143 cataaatctgattt 156  Q
    ||||||||||||||    
T  10085580 cataaatctgattt 10085593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 10956396 - 10956505
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  10956396 aatacgtttatgttattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcc-ccaaaactgaaacctc 10956494  T
Q  104 c-atcgtgcca 113  Q
    | |||||||||    
T  10956495 caatcgtgcca 10956505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 18097291 - 18097422
Alignment:
Q  41 gccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    ||||| |||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||| ||||||||||||||||  |||||||||||||||||    
T  18097291 gccactatgcgaccccatcgtgccacgatttttcctatgccttgcctc-aaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgatt 18097389  T
Q  140 atgcataaatctgatttgaagttaaatctcaca 172  Q
     |||| ||| ||||||| ||||||| |||||||    
T  18097390 ttgcagaaacctgattttaagttaactctcaca 18097422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 55 - 173
Target Start/End: Complemental strand, 38889875 - 38889756
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgca-taaatctga 153  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||| || |    
T  38889875 ccatcgtgccacgatttttccaatgccttgcctaaaaaactgaaacctccatcgtgccacgttgccttgccatcgtaccacgattctgcagaaaacctaa 38889776  T
Q  154 tttgaagttaaatctcacat 173  Q
    ||| ||||||| ||||||||    
T  38889775 ttttaagttaactctcacat 38889756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 172
Target Start/End: Complemental strand, 5886133 - 5885983
Alignment:
Q  23 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacg-ttgcct 121  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| |||||||||||||| ||||      
T  5886133 ctgccagcgcaccatcgtaccacgatgcgaccccatcgtgccacgatttttccagtaccttgcctaaaaaactaaaacatccatcgtgccacgtttgcgc 5886034  T
Q  122 tgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | | |||||||||||||| || | ||| || |||| ||||||| |||||||    
T  5886033 ttcaatcgtgccacgattctgtaaaaacctaattttaagttaactctcaca 5885983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 25388746 - 25388654
Alignment:
Q  23 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacg 115  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||    
T  25388746 ctgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacg 25388654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 32264412 - 32264581
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||| ||| | |||||||||||||||    ||||||| |||||||||||||||||||||||    
T  32264412 aatatgtttctgttattcgctgccagcgcaccatcgtgccacgttgcaagcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactgaaacctc 32264511  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacga-ttatgcataaatctgatttgaagttaaatctcacat 173  Q
    | ||||||||||||| ||  ||||||||||||||| || |||| ||| ||||||| ||||||| ||||||||    
T  32264512 caatcgtgccacgtt-cccagccatcgtgccacgatttctgca-aaacctgattttaagttaactctcacat 32264581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 35777280 - 35777163
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgat 154  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||  ||||||||||||| |||| |||||| ||    
T  35777280 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagctgtcgtgccacgattctgcagaaatctaat 35777181  T
Q  155 ttgaagttaaatctcaca 172  Q
    || ||||||| |||||||    
T  35777180 tttaagttaactctcaca 35777163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 1321329 - 1321194
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || ||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||  |||||||||    
T  1321329 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgaccccatcgtgccacgattttttcagtgctttgcctc-aaacttgaaacctc 1321231  T
Q  104 -catcgtgccacgttgccttgccatcgtgccacgatt 139  Q
      ||||||||||||||||  || ||||||||||||||    
T  1321230 taatcgtgccacgttgcccagcaatcgtgccacgatt 1321194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 5522984 - 5523119
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| |||||||||||| |    
T  5522984 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccattgtgccacgatttttccagtaccttgcctc-aaaactgaaaccac 5523082  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | ||||||||| ||||||  || ||| ||||||||||    
T  5523083 caatcgtgccatgttgcccagcaatcttgccacgatt 5523119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 11163008 - 11162924
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||    
T  11163008 ccatcgtgccacaatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgcccagcaatcgtgccacgatt 11162924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 26720436 - 26720301
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  26720436 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 26720338  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | ||| |||||||||||   |||||||||||||||||    
T  26720337 caatcctgccacgttgctcagccatcgtgccacgatt 26720301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 10958692 - 10958767
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 79  Q
    |||| |||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10958692 aatacgtttctgttattggctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 10958767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 11170260 - 11170178
Alignment:
Q  57 atcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  || | ||||||||||||    
T  11170260 atcgagccacgatttttccagtgccttgcctcaaaaaccgaaacctccatcgtgccacgttgcccagcaaccgtgccacgatt 11170178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 6719532 - 6719651
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc---atcgtgccacgttgccttgccatcgtgccacgattatgcataaatct 151  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||    ||||||||||| |||| | | ||||||||||||||| ||| ||| ||    
T  6719532 ccatcgtgccacgatttttccagtgcattgcct-aaaaactgaaacctctccaatcgtgccacgatgcccttcaatcgtgccacgattaagcagaaacct 6719630  T
Q  152 gatttgaagttaaatctcaca 172  Q
    ||||| ||||||| |||||||    
T  6719631 gattttaagttaattctcaca 6719651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 172
Target Start/End: Original strand, 7606880 - 7606963
Alignment:
Q  89 aaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    ||||||||||||||||||||||||||||||||  ||||||||| ||||||| |||| ||| ||||||| ||||||| |||||||    
T  7606880 aaaaactgaaacctccatcgtgccacgttgcccagccatcgtgtcacgattctgcagaaacctgattttaagttaactctcaca 7606963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 24177167 - 24177032
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| ||||||||| || ||  ||| ||||||||||||||||  ||||| |||||||||||||  ||||||||||| ||||| || | |||||||||  |    
T  24177167 aatacgtttatgtttttcgcctccaacgcaccatcgtgccacattgcgatcccatcgtgccacattttttccagtgacttgcttc-agaactgaaacaac 24177069  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | |||||||||||||||| ||| | ||||||||||||    
T  24177068 caatcgtgccacgttgccctgcaaacgtgccacgatt 24177032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 6066195 - 6066254
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccac 114  Q
    ||||||||||||||| ||||||||||||||||  ||||||| ||||||||||||||||||    
T  6066195 ccatcgtgccacgatgtttccagtgccttgcccaaaaaactaaaacctccatcgtgccac 6066254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 3859416 - 3859350
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatt 70  Q
    |||| |||||| ||||| || |||| |||||||||||||||||||| ||||||||||||||||||||    
T  3859416 aatacgtttatattattcgccgccagcgcaccatcgtgccacgatgtgaccccatcgtgccacgatt 3859350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 45882827 - 45882752
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 79  Q
    |||| |||| ||||||| | || || ||||||||||||||||| ||| | ||||||||| ||||||||||||||||    
T  45882827 aataggtttctgttattcgttgtcagcgcaccatcgtgccacgttgcaatcccatcgtggcacgatttttccagtg 45882752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 3859365 - 3859315
Alignment:
Q  124 ccatcgtgccacgattatgcataaatctgatttgaagttaaatctcacatt 174  Q
    ||||||||||||||||||||| ||| ||||||| ||||||| |||||||||    
T  3859365 ccatcgtgccacgattatgcagaaacctgattttaagttaactctcacatt 3859315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 35777309 - 35777266
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 48  Q
    |||||||||||||| |||||||||| |||||||||||||||||||    
T  35777309 aatatgtttatgtt-tttgctgccagcgcaccatcgtgccacgat 35777266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 4308676 - 4308725
Alignment:
Q  30 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 79  Q
    |||||||||||| |||||| ||| || |||||| ||||||||||||||||    
T  4308676 cgcaccatcgtggcacgattcgatccaatcgtggcacgatttttccagtg 4308725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 10084762 - 10084807
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatg 49  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||    
T  10084762 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatg 10084807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 10191682 - 10191727
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatg 49  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||    
T  10191682 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatg 10191727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 6719502 - 6719546
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 48  Q
    ||||||||| ||||||| || |||| |||||||||||||||||||    
T  6719502 aatatgtttctgttattcgccgccagcgcaccatcgtgccacgat 6719546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 38889905 - 38889861
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 48  Q
    ||||||||| ||||||| || |||| |||||||||||||||||||    
T  38889905 aatatgtttctgttattcgccgccagcgcaccatcgtgccacgat 38889861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 12907 - 13054
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||     
T  12907 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgccttga 13006  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    ||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  13007 catcgtgccacgattctgcagaaacctgattttaagttaactctcaca 13054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 14507546 - 14507716
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaa--actgaaacc 101  Q
    ||||||||| |||| || |||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||  |||||||||    
T  14507546 aatatgtttctgtttttcgctggcagcgcaccatcgtgccacgatgcgaccccatcgtgccaccatttttccagtgccttgtatcaaaaaaactgaaacc 14507645  T
Q  102 tccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||||||||||||||||  ||||||||||||||||| |||| ||||||||||| ||||||| |||||||    
T  14507646 tccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaatctgattttaagttaactctcaca 14507716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 19227780 - 19227915
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19227780 aatatgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaattgaaacctc 19227879  T
Q  104 catcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    |||| ||||||||||||   ||||||||||||||||    
T  19227880 catcatgccacgttgcccaaccatcgtgccacgatt 19227915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 26068735 - 26068882
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||| ||||||||||||||||    
T  26068735 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcatgccacgttgccttgc 26068834  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  26068835 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 26068882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 8995423 - 8995288
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8995423 aatacgtttctgttatttgctgtcagcgcaccatcgtgccacgatgtgaccccatcgtgccacgatttttccagtgccttgcc-caaaaactgaaacctc 8995325  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | ||||||||||||||||  |||||||||||||||||    
T  8995324 caatcgtgccacgttgcccagccatcgtgccacgatt 8995288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 9019870 - 9019735
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9019870 aatacgtttctgttatttgctgtcagcgcaccatcgtgccacgatgtgaccccatcgtgccacgatttttccagtgccttgcc-caaaaactgaaacctc 9019772  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | ||||||||||||||||  |||||||||||||||||    
T  9019771 caatcgtgccacgttgcccagccatcgtgccacgatt 9019735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 26066464 - 26066611
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||  || |||| ||||||||||||||||||||||||||||    
T  26066464 gccagcgcaccattgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaataactaaaacctccatcgtgccacgttgccttgc 26066563  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| | || ||| ||||||| ||||||| |||||||    
T  26066564 cgtcgtgccacgattctacagaaacctgattttaagttaactctcaca 26066611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 33308832 - 33308685
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||  |||  ||    
T  33308832 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgaagcccagc 33308733  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  33308732 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 33308685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 33311101 - 33310954
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||  |||  ||    
T  33311101 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgaagcccagc 33311002  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  33311001 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 33310954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 29755132 - 29755279
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  29755132 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 29755231  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  29755232 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 29755279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 11983400 - 11983558
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | ||||||||||||    
T  11983400 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg-cttacctc-acaactgaaacctc 11983497  T
Q  104 catcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaa 164  Q
    |||||| ||| ||||||   ||||||| |||||||| |||| ||| ||||||| |||||||    
T  11983498 catcgtaccatgttgcccaaccatcgtaccacgattctgcagaaacctgattttaagttaa 11983558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 4816639 - 4816749
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  4816639 aatatgtttctgtt-tttgctaccagcacaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtaccttgcctc-aaaactgaaacctc 4816736  T
Q  104 c-atcgtgccacg 115  Q
    | |||||||||||    
T  4816737 caatcgtgccacg 4816749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 15530512 - 15530628
Alignment:
Q  23 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcct 121  Q
    |||||| | |||||||||||||||||||| ||||||||| |||||| ||||| ||||| ||||||| |||  |||||||||| || |||||||||| ||     
T  15530512 ctgccagcacaccatcgtgccacgatgcggccccatcgtaccacgaattttcgagtgctttgcctc-aaacttgaaacctccaattgtgccacgttaccc 15530610  T
Q  122 tgccatcgtgccacgatt 139  Q
     |||||||||||||||||    
T  15530611 agccatcgtgccacgatt 15530628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 30729199 - 30729284
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca 89  Q
    |||| |||| ||||||| ||||||| ||||| ||||||||||| || |||||||||||| |||||  ||||||||| |||||||||    
T  30729199 aatacgtttctgttattcgctgccagcgcactatcgtgccacgttgtgaccccatcgtggcacgaaatttccagtgacttgcctca 30729284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 26084867 - 26084818
Alignment:
Q  30 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 79  Q
    |||||||||||||||||||||||  | |||||| ||||||||||||||||    
T  26084867 cgcaccatcgtgccacgatgcgattcaatcgtggcacgatttttccagtg 26084818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 32279910 - 32279845
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcc 120  Q
    |||||||||||||| |||||||| | |||||||| | ||||||||| ||| ||||||||||||||||    
T  32279910 ccatcgtgccacgacttttccagcgacttgcctc-agaactgaaacatccaatcgtgccacgttgcc 32279845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 15541511 - 15541596
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca 89  Q
    ||||||||| || |||| ||||||| || |||||||||||||| ||||| | ||||||| || ||  ||||||||| | |||||||    
T  15541511 aatatgtttctgctattcgctgccagcgtaccatcgtgccacgttgcgatctcatcgtggcatgaaatttccagtgacgtgcctca 15541596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 9e-52; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 34477485 - 34477632
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  ||    
T  34477485 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccacgttgcccagc 34477584  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    ||||||||||||||| |||| |||  |||||| ||||||| |||||||    
T  34477585 catcgtgccacgattctgcagaaacttgattttaagttaactctcaca 34477632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 38882013 - 38881878
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38882013 aatacgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactaaaacctc 38881914  T
Q  104 catcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    |||||||||||||||||  || ||||||||||||||    
T  38881913 catcgtgccacgttgcccagcaatcgtgccacgatt 38881878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 2174797 - 2174680
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgat 154  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||    
T  2174797 ccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 2174698  T
Q  155 ttgaagttaaatctcaca 172  Q
    || ||||||| |||||||    
T  2174697 tttaagttaactctcaca 2174680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 31544966 - 31544798
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| ||  | |||| |||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||  ||||||| |||||||    
T  31544966 aatatgtttctgtttttatccgccagcgcaccatcgtgtctcgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctc 31544867  T
Q  104 catcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||||||||||||||  || |||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  31544866 catcgtgccacgttgcccagctatcgtgccacgattttgcagaaacctgattttaagttaactctcaca 31544798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 10749652 - 10749505
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  10749652 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 10749553  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  10749552 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 10749505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 4236519 - 4236378
Alignment:
Q  23 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcct 121  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||     
T  4236519 ctgccagcgcaccatcgtgccacgatgcgatcccattgtgccacgatttttccagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgccc 4236421  T
Q  122 tgccatcgtgccacgattatgcataaatctgatttgaagttaa 164  Q
     ||||||||||||| ||| |||| ||||||||||| |||||||    
T  4236420 agccatcgtgccacaattctgcagaaatctgattttaagttaa 4236378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 31542610 - 31542442
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| ||  | |||| |||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||  ||||||| |||||||    
T  31542610 aatatgtttctgtttttatccgccagcgcaccatcgtgtctcgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctc 31542511  T
Q  104 catcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||||||||||||||  || |||||| ||||||| |||| ||| ||||||| ||||||| |||||||    
T  31542510 catcgtgccacgttgcccagctatcgtgtcacgattttgcagaaacctgattttaagttaactctcaca 31542442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 10757107 - 10756960
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  10757107 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 10757008  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | |||||| |||||| |||| ||| ||||||| ||||||| |||||||    
T  10757007 cgtcgtgctacgattgtgcagaaacctgattttaagttaactctcaca 10756960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 15354918 - 15355065
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  15354918 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 15355017  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  15355018 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 15355065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 15357194 - 15357341
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  15357194 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 15357293  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  15357294 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 15357341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 34479855 - 34479972
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgat 154  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  ||||||||||||||||| |||| ||| |||||    
T  34479855 ccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctgat 34479954  T
Q  155 ttgaagttaaatctcaca 172  Q
    || ||||||| |||||||    
T  34479955 tttaagttaactctcaca 34479972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 39797966 - 39797849
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgat 154  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| ||| |||||    
T  39797966 ccatcgtgccatgatttttccggtgccttgcctcaaaaactgaaacctccatcatgccacgttgcccagccatcgtgccacgattatgcagaaacctgat 39797867  T
Q  155 ttgaagttaaatctcaca 172  Q
    || ||||||| |||||||    
T  39797866 tttaagttaactctcaca 39797849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 16776065 - 16775930
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || | ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||  |||||||||    
T  16776065 aatatgtttctgtttttcgatgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgattttttcagtgctttgcctc-aaacttgaaacctc 16775967  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | |||||| ||||||||||||||||||||||||||||    
T  16775966 caatcgtgtcacgttgccttgccatcgtgccacgatt 16775930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 55 - 173
Target Start/End: Original strand, 25921874 - 25921993
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaa-actgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctga 153  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |   |||||||||||||||| |||| ||| ||||    
T  25921874 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgtccaaccatcgtgccacgattctgcagaaacctga 25921973  T
Q  154 tttgaagttaaatctcacat 173  Q
    ||| ||||||| ||||||||    
T  25921974 ttttaagttaactctcacat 25921993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 23664981 - 23664833
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||| | ||| |||||||||||| ||  |||  ||    
T  23664981 gccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgcctttcccaaaaaaataaaaactccatcgtgccgcgaagcccagc 23664882  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcacat 173  Q
      ||||||||||||| |||| ||| ||||||| ||||||| ||||||||    
T  23664881 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacat 23664833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 23793606 - 23793754
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||| | ||| |||||||||||| ||  |||  ||    
T  23793606 gccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgcctttcccaaaaaaataaaaactccatcgtgccgcgaagcccagc 23793705  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcacat 173  Q
      ||||||||||||| |||| ||| ||||||| ||||||| ||||||||    
T  23793706 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacat 23793754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 23667256 - 23667109
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||| | ||| |||||||||||| ||  |||  ||    
T  23667256 gccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgcctttcccaaaaaaataaaaactccatcgtgccgcgaagcccagc 23667157  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  23667156 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 23667109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 31179807 - 31179897
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacg 115  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  ||||||| |||||||||||||||||||    
T  31179807 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgtcttgcccaaaaaactaaaacctccatcgtgccacg 31179897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 21684832 - 21684909
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcc 81  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21684832 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcc 21684909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 659829 - 659746
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  659829 ccatcgtgccacgatttttccagtgacttgcctc--aaactgaaacctccaatcgtgccacgttgcctagccatcgtgccacgatt 659746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 38960487 - 38960604
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgat 154  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| |   |||  ||| ||||||||||||| |||| ||| |||||    
T  38960487 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcaaagcccagccgtcgtgccacgattgtgcagaaacctgat 38960586  T
Q  155 ttgaagttaaatctcaca 172  Q
    || ||||||| |||||||    
T  38960587 tttaagttaactctcaca 38960604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 659850 - 659929
Alignment:
Q  37 tcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgtt 117  Q
    ||||||||| |||||||| |||||||||||||||||||||||| ||||||||  |||||||||||||| |||||||||||||    
T  659850 tcgtgccacaatgcgacctcatcgtgccacgatttttccagtgacttgcctc--aaactgaaacctccaatcgtgccacgtt 659929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 21947935 - 21947803
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| ||||||| ||||||||   |||||||||||||| ||| | ||||||||||||||     ||||||| ||| |||||||| ||||||||||    
T  21947935 aatatgtttctgttattcgctgccac---accatcgtgccacgttgcaatcccatcgtgccacgtaaagtccagtgacttacctcaaaa-ctgaaacctc 21947840  T
Q  104 ca-tcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    || ||||| |||||||||| |||||||||||||||||    
T  21947839 caatcgtgtcacgttgcctagccatcgtgccacgatt 21947803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 18186489 - 18186589
Alignment:
Q  74 ccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||| |||||||||||| |||||||||||| |||||||||||||||  |||||||| |||||||| |||| |||  |||||| ||||||| |||||||    
T  18186489 ccagtgacttgcctcaaaa-ctgaaacctccaatcgtgccacgttgcccagccatcgtaccacgattctgcagaaacttgattttaagttaactctcaca 18186587  T
Q  173 tt 174  Q
    ||    
T  18186588 tt 18186589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 31466379 - 31466496
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc-catcgtgccacgttgccttgccatcgtgccacgatt-atgcataaatctg 152  Q
    ||||||||||| ||||||||||||| |||||||| | ||||||||| || ||||||||||||||||| | | ||||||||||||||  |||| ||| |||    
T  31466379 ccatcgtgccaagatttttccagtgacttgcctc-ataactgaaacatctcatcgtgccacgttgcccttcaatcgtgccacgattcctgca-aaacctg 31466476  T
Q  153 atttgaagttaaatctcaca 172  Q
    |||| ||||||| |||||||    
T  31466477 attttaagttaactctcaca 31466496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 2818729 - 2818813
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    ||||||||||||||    ||||||| |||||||||||| |||||||||||| |||||||| ||||||| |||||||||||||||||    
T  2818729 ccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaacctccaatcgtgccatgttgcctagccatcgtgccacgatt 2818813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 139
Target Start/End: Original strand, 20504316 - 20504419
Alignment:
Q  36 atcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgcca 134  Q
    ||||||||||| ||| | |||||||||||||||    |||| || |||||||||||| || ||||||||| |||||||||||||||  || |||||||||    
T  20504316 atcgtgccacgttgcaatcccatcgtgccacgaaaaatccattgacttgcctcaaaa-ctaaaacctccaatcgtgccacgttgcccagctatcgtgcca 20504414  T
Q  135 cgatt 139  Q
    |||||    
T  20504415 cgatt 20504419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 20507833 - 20507968
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| ||||||| ||||| | |||||| |||||||| | ||| | |||||||||||||||    |||| || |||||||| |||||| |||||||    
T  20507833 aatatgtttctgttattcgctgctagcgcaccttcgtgccatgttgcaatcccatcgtgccacgaaaaatccaatgacttgcctc-aaaactaaaacctc 20507931  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | ||||||| ||||||||   | ||||||||||||||    
T  20507932 caatcgtgctacgttgcccaactatcgtgccacgatt 20507968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 21684905 - 21684969
Alignment:
Q  108 gtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||||||||||  ||||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  21684905 gtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 21684969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 36402747 - 36402845
Alignment:
Q  74 ccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||| |||||||||||| |||||||||||| |||||| | ||||||  |||||||||||  |||| |||| ||| || |||| ||||||| |||||||    
T  36402747 ccagtgacttgcctcaaaa-ctgaaacctccaatcgtgctatgttgcccagccatcgtgcctagattctgcagaaacctaattttaagttaactctcaca 36402845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 39854366 - 39854317
Alignment:
Q  30 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 79  Q
    |||||||||||||||||||||||  | | |||| ||||||||||||||||    
T  39854366 cgcaccatcgtgccacgatgcgattcaaccgtgacacgatttttccagtg 39854317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 42238096 - 42238047
Alignment:
Q  30 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 79  Q
    ||||||||||||||||| |||||   ||||||| ||||||||||||||||    
T  42238096 cgcaccatcgtgccacgttgcgatttcatcgtggcacgatttttccagtg 42238047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 1240219 - 1240171
Alignment:
Q  31 gcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 79  Q
    ||||||||||| |||||| ||| || |||||| ||||||||||||||||    
T  1240219 gcaccatcgtggcacgattcgatccaatcgtggcacgatttttccagtg 1240171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 4409946 - 4409890
Alignment:
Q  23 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 79  Q
    |||||| |||||||||||| |||||| ||| || || ||| ||||||||||||||||    
T  4409946 ctgccatcgcaccatcgtggcacgattcgatccaattgtggcacgatttttccagtg 4409890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 12556325 - 12556408
Alignment:
Q  56 catcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    |||||||||||||    ||||||| |||||||| ||||||||||||||| || |||||||||||||  |||||  ||||||||||    
T  12556325 catcgtgccacgaaaaatccagtgacttgcctc-aaaactgaaacctccaattgtgccacgttgcccagccattatgccacgatt 12556408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 31179885 - 31179933
Alignment:
Q  124 ccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  31179885 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 31179933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 39797996 - 39797956
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgcca 44  Q
    ||||||||| ||||||| ||||||| |||||||||||||||    
T  39797996 aatatgtttctgttattcgctgccagcgcaccatcgtgcca 39797956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 18812815 - 18812668
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  ||    
T  18812815 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccacgttgcccagc 18812716  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| | || ||| ||||||| ||||||| |||||||    
T  18812715 cgtcgtgccacgattcttcagaaacctgattttaagttaactctcaca 18812668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 43079494 - 43079347
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||    
T  43079494 gccagcgcaccatcgtgccacgatgagaccccatcgtaccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgccttgc 43079395  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  43079394 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 43079347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 33 - 172
Target Start/End: Complemental strand, 43081861 - 43081722
Alignment:
Q  33 accatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgc 132  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||| |||||||||| ||||||    
T  43081861 accatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccactttgccttgccgtcgtgc 43081762  T
Q  133 cacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    ||||||| |||| ||| ||||||| ||||||| |||||||    
T  43081761 cacgattctgcagaaacctgattttaagttaactctcaca 43081722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 27826950 - 27826815
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  27826950 aatatgtttttgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcttcaaaaaatgaaacctc 27826851  T
Q  104 catcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    |||||||||||||||||  || ||||||||||||||    
T  27826850 catcgtgccacgttgcccagcaatcgtgccacgatt 27826815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 27829261 - 27829126
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||| |||||||||    
T  27829261 aatatgtttttgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgttttgcctcaaaaaatgaaacctc 27829162  T
Q  104 catcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    |||||||||||||||||  || ||||||||||||||    
T  27829161 catcgtgccacgttgcccagcaatcgtgccacgatt 27829126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 12517397 - 12517532
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||||||    
T  12517397 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtacattgcctc-aaaactgaaacctc 12517495  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | |||||||||||||||||||||||||||||||||||    
T  12517496 caatcgtgccacgttgccttgccatcgtgccacgatt 12517532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 18810630 - 18810483
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||| |||||||||||||| | |||||||||||||||||||| ||||| | ||||||||||||||||||||||||  ||    
T  18810630 gccagcgcaccatcgtgccacgatgtgaccccatcgtgccgcaatttttccagtgccttgcctaaaaaaataaaacctccatcgtgccacgttgcccagc 18810531  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  18810530 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 18810483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 44720785 - 44720617
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  44720785 aatatgtttctgtt-tttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtaccttgcctc-aaaactgaaacctc 44720688  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgattatgca-taaatctgatttgaagttaaatctcaca 172  Q
    | | ||||||||  ||||  || ||| |||||||||| ||||  ||| ||||||| ||||||| |||||||    
T  44720687 caaacgtgccacaatgcccagcaatcatgccacgattctgcagaaaacctgattttaagttaactctcaca 44720617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 14807716 - 14807556
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| ||||||||| || ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  14807716 aatacgtttatgtttttcgctgccagcgcaccaccgtgccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 14807618  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaa 164  Q
    | |||||| |||||||||   ||||| |||||||||| |||| ||| ||||||| |||||||    
T  14807617 caatcgtgtcacgttgcccaaccatcatgccacgattctgcagaaacctgattttaagttaa 14807556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 15067945 - 15067785
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||| ||||||| ||||||||||||||||| ||||| ||||||||| || ||||||||||||| ||||| || ||||||||||||||    
T  15067945 aatacgtttttgttattcgctgccagcgcaccatcgtgccacgttgcgatcccatcgtggcatgatttttccagtggcttgcttc-aaaactgaaacctc 15067847  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt-atgcataaatctgatttgaagttaa 164  Q
    | ||||||||| ||||||  |||||| ||||||||||  |||| ||||||||||| |||||||    
T  15067846 caatcgtgccatgttgcccagccatcttgccacgattcctgca-aaatctgattttaagttaa 15067785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 28251988 - 28252093
Alignment:
Q  34 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgc 132  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||  |||||||||| ||||| ||||||||||| ||||||||||    
T  28251988 ccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctccaatcgtaccacgttgcctagccatcgtgc 28252086  T
Q  133 cacgatt 139  Q
    |||||||    
T  28252087 cacgatt 28252093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 15072674 - 15072506
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||| ||||||| ||||||||| ||||||| ||||| ||||||||| ||||||||||| |||| ||||| || ||||||||||||||    
T  15072674 aatacgtttctgttattcgctgccagcgcaccatcatgccacgttgcgatcccatcgtgacacgatttttctagtggcttgcttc-aaaactgaaacctc 15072576  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt-atgcataaatctgatttgaagttaaatctcaca 172  Q
    | |||||| |||||||||  ||||||||| |||||||  ||||  |||||||||| ||||||| |||||||    
T  15072575 caatcgtgtcacgttgcccagccatcgtgtcacgattcctgca-gaatctgattttaagttaactctcaca 15072506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 3886322 - 3886412
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaa-actgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgca 144  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |  |||||| || ||||||| ||||    
T  3886322 ccatcgtaccacgatttttccagtgtcttgcctcaaaaaactgaaacctccatcgtgccacgttgtccagccatcatgtcacgattctgca 3886412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 4423952 - 4423868
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||| || |||||||||||||  || || |||||||||||    
T  4423952 ccatcgtgccacgatttttccagtgccttgcct-taaaactgaaacctccaattgtgccacgttgcccagcaattgtgccacgatt 4423868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 28251937 - 28252002
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgat 69  Q
    |||| |||| |||| || ||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  28251937 aatacgtttctgtttttcgctgccaacgcaccatcgtaccacgatgcgatcccatcgtgccacgat 28252002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 3878490 - 3878322
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  3878490 aatacgtttctgttattcgctgccagcgtaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 3878392  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||||||  ||||||||||||||||| |||| ||||||||||| ||||||| |||||||    
T  3878391 caatcgtgccacgttgcccagccatcgtgccacgattctgcagaaatctgattttaagttaactctcaca 3878322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 1047356 - 1047503
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  1047356 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 1047455  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  1047456 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 1047503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 2935217 - 2935070
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  2935217 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 2935118  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  2935117 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 2935070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 9027540 - 9027687
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  9027540 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 9027639  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  9027640 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 9027687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 22137025 - 22136878
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  22137025 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 22136926  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  22136925 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 22136878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 40552052 - 40551905
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  40552052 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 40551953  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  40551952 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 40551905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 27306600 - 27306768
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||||| || |||||||| ||||||||||||||    
T  27306600 aatacgtttctgttattcgctgctagcgcaccatcgtgccacgaagcgaccccatcgtgccacgatttttccaatgacttgcctc-aaaactgaaacctc 27306698  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcacat 173  Q
    | |||||||||||||| |  ||||||||||||||||| |||| ||| || |||| ||||||| ||||||||    
T  27306699 caatcgtgccacgttgtccagccatcgtgccacgattttgca-aaaccttattttaagttaactctcacat 27306768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 22108014 - 22107867
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||  |||  ||    
T  22108014 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctgcatcgtgccgcgaagcccagc 22107915  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  22107914 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 22107867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 40549774 - 40549627
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||  |||  ||    
T  40549774 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctgcatcgtgccgcgaagcccagc 40549675  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  40549674 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 40549627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 40837144 - 40837261
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgat 154  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |   |||||||||||||||| |||| ||| |||||    
T  40837144 ccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctccatcgtgccacgttgtccgaccatcgtgccacgattctgcagaaacctgat 40837243  T
Q  155 ttgaagttaaatctcaca 172  Q
    || ||||||| |||||||    
T  40837244 tttaagttaactctcaca 40837261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 35547 - 35412
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| || |||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  35547 aatacgtttctgctatttgctgccagcgcacgatcgggccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 35449  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | ||||||||||||||||| || ||||||||||||||    
T  35448 caatcgtgccacgttgcctagcaatcgtgccacgatt 35412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 44482 - 44347
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||  |||||||||    
T  44482 aatatgtttatgttatttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccatgatttttccagtgctttgcgtc-aaacttgaaacctc 44384  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | |||||||||| |||||  |  ||||||||||||||    
T  44383 caatcgtgccacattgcccagaaatcgtgccacgatt 44347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 25542448 - 25542317
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||    
T  25542448 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctc 25542350  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccac 135  Q
    | ||||||||||||||||  || ||||||||||    
T  25542349 caatcgtgccacgttgcccagcaatcgtgccac 25542317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 26804462 - 26804345
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctga 153  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||  ||||||||||||||||| || | ||| ||||    
T  26804462 ccatcgtgccacgatttttccactgccttgcctc-aaaactgaaacctccaatcgtaccacgttgcccagccatcgtgccacgattctgtagaaacctga 26804364  T
Q  154 tttgaagttaaatctcaca 172  Q
    ||| ||||||| |||||||    
T  26804363 ttttaagttaactctcaca 26804345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 18567531 - 18567396
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||| | ||||| ||||||||||||||| | || ||||||||||||||||||    ||||||| |||||||| ||||||||||||||    
T  18567531 aatacgtttctgttattcgttgccagcgcaccatcgtgccaagttgtgaccccatcgtgccacgaaaaatccagtgacttgcctc-aaaactgaaacctc 18567433  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | |||||||||| |||||  || ||||||||||||||    
T  18567432 caatcgtgccactttgcccagctatcgtgccacgatt 18567396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 31435418 - 31435553
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||| ||||||| | ||||| ||||||||||||||| | || ||||||||||||||||||    ||||||| |||||||| ||||||||||||||    
T  31435418 aatacgtttctgttattcgttgccagcgcaccatcgtgccaagttgtgaccccatcgtgccacgaaaaatccagtgacttgcctc-aaaactgaaacctc 31435516  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    | |||||||||| |||||  || ||||||||||||||    
T  31435517 caatcgtgccactttgcccagctatcgtgccacgatt 31435553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 1049699 - 1049780
Alignment:
Q  58 tcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgatt 139  Q
    ||||||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||  || ||||||||||||||    
T  1049699 tcgtgccacgatttttccagtaccttgcttc-aaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacgatt 1049780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 26804492 - 26804448
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 48  Q
    |||| |||| ||||||||||||||| |||||||||||||||||||    
T  26804492 aatacgtttctgttatttgctgccagcgcaccatcgtgccacgat 26804448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 40946216 - 40946167
Alignment:
Q  30 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 79  Q
    |||||||||||| |||||| ||| || |||||| ||||||||||||||||    
T  40946216 cgcaccatcgtggcacgattcgatccaatcgtgacacgatttttccagtg 40946167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 42006484 - 42006404
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 85  Q
    |||| ||||||||||||| || | || | |||||||||||||| | |||  ||||||||||||||||||| ||||| |||||    
T  42006484 aatacgtttatgttatttccttcaac-gtaccatcgtgccacgttacgattccatcgtgccacgattttttcagtgacttgc 42006404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 2797 - 2670
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  2797 aatacgtttatgttattcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtaccttgcctc-aaaactgaaacctc 2699  T
Q  104 c-atcgtgccacgttgccttgccatcgtg 131  Q
    | ||||||||||||||||| || ||||||    
T  2698 caatcgtgccacgttgcctagcaatcgtg 2670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 22062 - 21915
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  22062 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 21963  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  21962 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 21915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 24337 - 24190
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  24337 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 24238  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  24237 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 24190  T

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Target: scaffold0025 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 69665 - 69825
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 103  Q
    ||||||||| |||| || ||||||| | ||||||||||| ||||||||| ||||| |||| |||||||||||||||| ||||||| |||  |||||||||    
T  69665 aatatgtttctgtttttcgctgccagcacaccatcgtgcaacgatgcgatcccattgtgctacgatttttccagtgctttgcctc-aaacttgaaacctc 69763  T
Q  104 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaa 164  Q
    | ||||||||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||    
T  69764 caatcgtgccacgttgcctagccatcgtgccacgattctgcagaaatctgattttaagttaa 69825  T

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Target: scaffold0025; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 55 - 164
Target Start/End: Original strand, 73427 - 73536
Alignment:
Q  55 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattatgcataaatctga 153  Q
    |||||||||||| ||||||||||||| ||||||||||   ||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||    
T  73427 ccatcgtgccacaatttttccagtgctttgcctcaaact-tgaaacctccaatcgtgccacgttgcctagccatcgtgccacgattctgcataaatctga 73525  T
Q  154 tttgaagttaa 164  Q
    ||| |||||||    
T  73526 ttttaagttaa 73536  T

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Target: scaffold0472 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 6074 - 5927
Alignment:
Q  25 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 124  Q
    |||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||  |||  ||    
T  6074 gccagcgcaccatcgtgccatgatgagaccccatcatgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccgcgaagcccagc 5975  T
Q  125 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  5974 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 5927  T

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Target: scaffold0068 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 29078 - 29001
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcc 81  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29078 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcc 29001  T

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Target: scaffold0068; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 29005 - 28941
Alignment:
Q  108 gtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 172  Q
    |||||||||||||  ||||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  29005 gtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 28941  T

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Target: scaffold0131 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 14936 - 14768
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacct- 102  Q
    ||||||||| ||||||| ||||||| |||||||||||| |||| || || |||||||||||||||  ||||||||| |||||||| | ||||||||| |     
T  14936 aatatgtttctgttattcgctgccagcgcaccatcgtgtcacgttgtgatcccatcgtgccacgaaatttccagtgacttgcctc-ataactgaaacttc 14838  T
Q  103 ccatcgtgccacgttgccttgccatcgtgccacgatt-atgcataaatctgatttgaagttaaatctcac 171  Q
    ||||||| |||||||||| | | ||||||||||||||  |||| ||  ||||||| ||||||| ||||||    
T  14837 ccatcgttccacgttgcccttcaatcgtgccacgattcctgcagaatcctgattttaagttaactctcac 14768  T

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Target: scaffold0339 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 3914 - 3872
Alignment:
Q  4 aatatgtttatgttatttgctgccaccgcaccatcgtgccacg 46  Q
    |||| |||||||||||| ||||||| |||||||||||||||||    
T  3914 aatacgtttatgttattcgctgccatcgcaccatcgtgccacg 3872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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