View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_73 (Length: 372)

Name: NF6864A_low_73
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_73
NF6864A_low_73
[»] chr6 (25 HSPs)
chr6 (5-367)||(28097221-28097583)
chr6 (107-355)||(29827130-29827378)
chr6 (14-265)||(28326529-28326780)
chr6 (14-265)||(28504165-28504416)
chr6 (30-299)||(28140602-28140871)
chr6 (31-268)||(28186462-28186699)
chr6 (155-346)||(26950935-26951126)
chr6 (5-268)||(28296617-28296880)
chr6 (5-268)||(28515193-28515456)
chr6 (155-265)||(26636838-26636948)
chr6 (155-265)||(26742804-26742914)
chr6 (5-139)||(28235607-28235741)
chr6 (152-352)||(29842785-29842985)
chr6 (134-249)||(25075038-25075153)
chr6 (174-265)||(26849923-26850014)
chr6 (5-132)||(28227994-28228121)
chr6 (155-265)||(26960317-26960427)
chr6 (222-352)||(27697379-27697509)
chr6 (5-131)||(28182160-28182286)
chr6 (154-251)||(26812719-26812816)
chr6 (5-86)||(26892649-26892730)
chr6 (175-248)||(29476962-29477035)
chr6 (155-251)||(27664108-27664204)
chr6 (18-74)||(28243850-28243906)
chr6 (184-268)||(28244016-28244100)
[»] chr2 (2 HSPs)
chr2 (5-352)||(3280701-3281048)
chr2 (106-251)||(17992109-17992254)
[»] scaffold0019 (1 HSPs)
scaffold0019 (5-367)||(57072-57434)
[»] chr5 (1 HSPs)
chr5 (194-367)||(16692098-16692271)
[»] chr4 (1 HSPs)
chr4 (5-323)||(5089772-5090090)
[»] chr1 (1 HSPs)
chr1 (108-251)||(26137033-26137176)
[»] scaffold0038 (4 HSPs)
scaffold0038 (5-139)||(35769-35903)
scaffold0038 (5-132)||(28492-28619)
scaffold0038 (18-74)||(44012-44068)
scaffold0038 (184-268)||(44178-44262)
[»] chr8 (1 HSPs)
chr8 (194-367)||(31906285-31906458)


Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 5 - 367
Target Start/End: Complemental strand, 28097583 - 28097221
Alignment:
Q  5 gtttggtgttggcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097583 gtttggtgctggcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 28097484  T
Q  105 aaagaagcccttgaattgcttaggtggagggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctg 204  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097483 aaagaagcccttgaattgcttaggtggaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctg 28097384  T
Q  205 gccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtga 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097383 gccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtga 28097284  T
Q  305 agagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097283 agagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 28097221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 107 - 355
Target Start/End: Original strand, 29827130 - 29827378
Alignment:
Q  107 agaagcccttgaattgcttaggtggagggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggc 206  Q
    |||| ||||||||||  |||||||||  |||||||||| ||    || ||||||||| |||||    |||||| |||||||||||  ||||||| |||||    
T  29827130 agaatcccttgaattatttaggtggaaagcttttaaagatagtataggtgattcaagatatgatgacattttagaccgtgcaatagcttatgcttctggc 29827229  T
Q  207 cttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaag 306  Q
    ||||| ||||  || ||| || ||||| ||   |||| ||||||| |||||||||||||||| ||| | || ||| |||||||||| ||||||| | |||    
T  29827230 cttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatctatattagatagatatgaaaggattcctaataaag 29827329  T
Q  307 agattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatga 355  Q
    |||| ||||| ||||||    | ||||||||||||||||||||||||||    
T  29827330 agatccaaaatatacttaaaataagttttgatgctttggaggaagatga 29827378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 28326529 - 28326780
Alignment:
Q  14 tggcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaagaaagaagcc 113  Q
    ||||||||||||||| |||||||||||||| ||| | ||||||  |||||| |||||||||  | |||||||||  |   ||||||  |||| ||||||     
T  28326529 tggcagtagagtgatcgttaccactcgagacaaacatttgctaaaaagtcacgggattgaaagagcatatgaaattcctaagttaattaagagagaagct 28326628  T
Q  114 cttgaattgcttaggtggagggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccat 213  Q
    ||||||||| | |||||||   |||| |||  |||  |||| ||||||| || |||  | |||||| || ||||| ||| ||||||| ||||||||||||    
T  28326629 cttgaattgttgaggtggaatactttcaaaaataacaaagtcgattcaaattttgacggcattttatactgtgcagtaacttatgcttctggccttccat 28326728  T
Q  214 tggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatg 265  Q
    |||| || ||| || | ||||||||||||| ||||||| |||||| ||||||    
T  28326729 tggctttagaagtagtgggttccaacttgtttggaaagaatatagtagaatg 28326780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 28504165 - 28504416
Alignment:
Q  14 tggcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaagaaagaagcc 113  Q
    ||||||||||||||| |||||||||||||| ||| | ||||||  |||||| |||||||||  | |||||||||  |   ||||||  |||| ||||||     
T  28504165 tggcagtagagtgatcgttaccactcgagacaaacatttgctaaaaagtcacgggattgaaagagcatatgaaattcctaagttaattaagagagaagct 28504264  T
Q  114 cttgaattgcttaggtggagggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccat 213  Q
    ||||||||| | |||||||   |||| |||  |||  |||| ||||||| || |||  | |||||| || ||||| ||| ||||||| ||||||||||||    
T  28504265 cttgaattgttgaggtggaatactttcaaaaataacaaagtcgattcaaattttgacggcattttatactgtgcagtaacttatgcttctggccttccat 28504364  T
Q  214 tggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatg 265  Q
    |||| || ||| || | ||||||||||||| ||||||| |||||| ||||||    
T  28504365 tggctttagaagtagtgggttccaacttgtttggaaagaatatagtagaatg 28504416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 30 - 299
Target Start/End: Original strand, 28140602 - 28140871
Alignment:
Q  30 gttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaagaaagaagcccttgaattgcttaggt 129  Q
    ||||| |||||||| ||| | ||||||||| |||||||||||||   ||| ||||||  | | | |||||| ||| ||||||| || || ||||| |  |    
T  28140602 gttacaactcgagacaaacatttgctagcatgtcatgggattgagagaacttatgaactagatgggttaaataaggaagaagctctagagttgctgaaat 28140701  T
Q  130 ggagggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatatt 229  Q
    ||| ||| ||||||  |||  ||||||||||||||||||||   ||||||||||||||| | | ||||||  |||||||||||||||| || ||| || |    
T  28140702 ggaaggcatttaaaaataataaagttgattcaagttatgagcacattttaaaccgtgcagttacttatgcctctggccttccattggctttagaagtagt 28140801  T
Q  230 aggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcct 299  Q
     ||||| | ||||| ||||||||||| ||| || ||||| |||   || ||||| |||||||| ||||||    
T  28140802 tggttctagcttgtttggaaagcataaagatgagtggaaatctacattagatcggtatgaaaggattcct 28140871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 268
Target Start/End: Original strand, 28186462 - 28186699
Alignment:
Q  31 ttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaagaaagaagcccttgaattgcttaggtg 130  Q
    ||||||||||||| ||| | ||||||||   |||||||||||||  | ||||| ||  |||  |||||||  |||||||||| ||||||||| | | |||    
T  28186462 ttaccactcgagacaaacaattgctagctcatcatgggattgaaagagcatataaattacataagttaaatgagaaagaagctcttgaattgttgacgtg 28186561  T
Q  131 gagggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatatta 230  Q
    || |||||| |||  |||  |||||||| ||| ||  ||  |  ||||| ||| |||| ||| ||||||| |||||||||||||||| || ||| || |     
T  28186562 gaaggctttaaaaaataacaaagttgatacaaatttcgacagcgttttacaccatgcagtaacttatgcttctggccttccattggctttagaagtagtg 28186661  T
Q  231 ggttccaacttgtatggaaagcatatagaagaatggaa 268  Q
    ||||||||||||| ||||||| |||||| |||||||||    
T  28186662 ggttccaacttgtttggaaagaatataggagaatggaa 28186699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 346
Target Start/End: Original strand, 26950935 - 26951126
Alignment:
Q  155 tgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcat 254  Q
    ||||||||| |||||  ||||||||||||||||| | || |||||||||||||||||||| || || ||| || | ||||| ||||||| |||||||  |    
T  26950935 tgattcaaggtatgatagtattttaaaccgtgcagttaaatatgctgctggccttccattagctttagaagtagtgggttctaacttgtttggaaagact 26951034  T
Q  255 atagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttgga 346  Q
    |||| ||||||  | ||||| || |||   ||||||||||||||   |||||| || ||||| ||||||   || || ||||||||||||||    
T  26951035 atagcagaatgtgagtctttattagataagtatgaaagaattccacatgaagatatccaaaagatacttaaagtaagctttgatgctttgga 26951126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 28296880 - 28296617
Alignment:
Q  5 gtttggtgttggcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 104  Q
    ||||||| |||| |||| ||||||  ||||||||| ||| ||||| |||||||   ||||||||||||||  | ||||||||| |||  |||||||  |     
T  28296880 gtttggtcttggaagtaaagtgatcattaccactcaagaaaaaaaattgctagatggtcatgggattgaaagagcatatgaaatacataagttaaatgac 28296781  T
Q  105 aaagaagcccttgaattgcttaggtggagggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctg 204  Q
    |||||||| ||||||||| | || ||||  ||||| |||  |||  |||| ||| ||| || |||    |||||| |||  ||  ||| ||||||| |||    
T  28296780 aaagaagctcttgaattgttgagatggaatgctttcaaaaataacaaagtcgatacaaattttgacgacattttacaccaggctgtaacttatgcttctg 28296681  T
Q  205 gccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 268  Q
    ||||||||||||| || ||| || | ||||||||||||| ||||||| |||||  |||||||||    
T  28296680 gccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaa 28296617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 28515193 - 28515456
Alignment:
Q  5 gtttggtgttggcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 104  Q
    ||||||| |||| |||| ||||||  ||||||||| ||| ||||| |||||||   ||||||||||||||  | ||||||||| |||  |||||||  |     
T  28515193 gtttggtcttggaagtaaagtgatcattaccactcaagaaaaaaaattgctagatggtcatgggattgaaagagcatatgaaatacataagttaaatgac 28515292  T
Q  105 aaagaagcccttgaattgcttaggtggagggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctg 204  Q
    |||||||| ||||||||| | || ||||  ||||| |||  |||  |||| ||| ||| || |||    |||||| |||  ||  ||| ||||||| |||    
T  28515293 aaagaagctcttgaattgttgagatggaatgctttcaaaaataacaaagtcgatacaaattttgacgacattttacaccaggctgtaacttatgcttctg 28515392  T
Q  205 gccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 268  Q
    ||||||||||||| || ||| || | ||||||||||||| ||||||| |||||  |||||||||    
T  28515393 gccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaa 28515456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 265
Target Start/End: Original strand, 26636838 - 26636948
Alignment:
Q  155 tgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcat 254  Q
    ||||||||| ||||| |  ||||||||||||||| | || |||||| ||||||||||||| || || ||| || | ||||||||||||| |||||||  |    
T  26636838 tgattcaagctatgattacattttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaagagt 26636937  T
Q  255 atagaagaatg 265  Q
    |||| ||||||    
T  26636938 atagcagaatg 26636948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 265
Target Start/End: Original strand, 26742804 - 26742914
Alignment:
Q  155 tgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcat 254  Q
    ||||||||| ||||| |  ||||||||||||||| | || |||||| ||||||||||||| || || ||| || | ||||||||||||| |||||||  |    
T  26742804 tgattcaagctatgattacattttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaagagt 26742903  T
Q  255 atagaagaatg 265  Q
    |||| ||||||    
T  26742904 atagcagaatg 26742914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 28235607 - 28235741
Alignment:
Q  5 gtttggtgttggcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 104  Q
    |||||||  ||| |||| ||||||  ||||||||||||| ||| | ||||||||||||||||||||||||  ||| || |||| | |  |||||||  ||    
T  28235607 gtttggtcctggaagtaaagtgatcattaccactcgagacaaacaattgctagcaagtcatgggattgaaagaacgtacgaaatagataagttaaatgag 28235706  T
Q  105 aaagaagcccttgaattgcttaggtggagggcttt 139  Q
    || ||||| ||||||||| | ||||||| ||||||    
T  28235707 aacgaagctcttgaattgttgaggtggaaggcttt 28235741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 352
Target Start/End: Complemental strand, 29842985 - 29842785
Alignment:
Q  152 agttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaac-ttgtatggaaa 250  Q
    |||||||||||| |||||    |||||| |||||||||||  ||||||| |||||||||| ||||  || ||| || |||| |||| | |||| ||||||    
T  29842985 agttgattcaagctatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtagg-tccagctttgtttggaaa 29842887  T
Q  251 gcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaa 350  Q
    | |||||||||||||||| |||   || ||| | |||||||| ||||||| | ||||||| || || ||||||    | || ||||||||||||||||||    
T  29842886 gaatatagaagaatggaaatctacattagataggtatgaaaggattcctaataaagagatccacaatatacttaaaataagctttgatgctttggaggaa 29842787  T
Q  351 ga 352  Q
    ||    
T  29842786 ga 29842785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 249
Target Start/End: Original strand, 25075038 - 25075153
Alignment:
Q  134 ggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggt 233  Q
    ||||||||||  |||| ||  ||||||||| ||||| |  ||||||||||||||||| || |||||| ||||||||||||| || || ||| |  | |||    
T  25075038 ggcttttaaaagtaaaaaaaatgattcaagctatgattacattttaaaccgtgcaattaaatatgcttctggccttccattagctttagaagttgtgggt 25075137  T
Q  234 tccaacttgtatggaa 249  Q
    |||||||||| |||||    
T  25075138 tccaacttgtttggaa 25075153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 26849923 - 26850014
Alignment:
Q  174 attttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatg 265  Q
    |||||||| |||||| | || |||||| ||||||||||||| || || ||| || | ||||||||||||| |||||||  ||||||||||||    
T  26849923 attttaaatcgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaagagtatagaagaatg 26850014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 28227994 - 28228121
Alignment:
Q  5 gtttggtgttggcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 104  Q
    |||||||  ||| |||| ||||||  ||||||||||| | ||| | ||||||||||||||||||||||||  | ||||||||| | |  |||||||  ||    
T  28227994 gtttggtcctggaagtaaagtgatcattaccactcgaaacaaacaattgctagcaagtcatgggattgaaagagcatatgaaatagataagttaaatgag 28228093  T
Q  105 aaagaagcccttgaattgcttaggtgga 132  Q
    || ||||| ||||||||| | |||||||    
T  28228094 aacgaagctcttgaattgatgaggtgga 28228121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 265
Target Start/End: Original strand, 26960317 - 26960427
Alignment:
Q  155 tgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcat 254  Q
    ||||||||| ||||| |  ||||||||||||||| | || |||||| ||||||||||||| || || ||| || | ||||||||||||| ||| |||  |    
T  26960317 tgattcaagctatgattacattttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggcaagagt 26960416  T
Q  255 atagaagaatg 265  Q
    |||| ||||||    
T  26960417 atagcagaatg 26960427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 352
Target Start/End: Complemental strand, 27697509 - 27697379
Alignment:
Q  222 gaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaagagattcaaaaaatac 321  Q
    |||||| | ||||| ||||||| ||||||| | |||||||||||||| | | | || ||| | ||||| || ||||| | | ||||||| ||||| ||||    
T  27697509 gaaatagtgggttctaacttgtttggaaagaacatagaagaatggaagtatatattagatgggtatgacaggattcccaataaagagatccaaaagatac 27697410  T
Q  322 ttcgtgtgagttttgatgctttggaggaaga 352  Q
    || | ||||| | |||||||||||| |||||    
T  27697409 ttagagtgagctatgatgctttggaagaaga 27697379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 28182160 - 28182286
Alignment:
Q  5 gtttggtgttggcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 104  Q
    |||||||  ||| |||| ||||||  |||||||||||||  || | ||||||| | ||||||||||||||  | ||||||||| | |  |||||||  ||    
T  28182160 gtttggtcctggtagtaaagtgatcattaccactcgagacgaacaattgctagtaggtcatgggattgaaagagcatatgaaatagataagttaaatgag 28182259  T
Q  105 aaagaagcccttgaattgcttaggtgg 131  Q
    |||||||| ||||||||| | ||||||    
T  28182260 aaagaagctcttgaattgttgaggtgg 28182286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 251
Target Start/End: Original strand, 26812719 - 26812816
Alignment:
Q  154 ttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaag 251  Q
    |||||||||||||||| |  |||||||| || ||| |||| ||| || ||||||||||||| ||  | ||| || | ||||||||||||| |||||||    
T  26812719 ttgattcaagttatgattacattttaaatcgcgcagtaaaatatacttctggccttccattagctatagaagtagtgggttccaacttgtttggaaag 26812816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 26892730 - 26892649
Alignment:
Q  5 gtttggtgttggcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaa 86  Q
    ||||||| |||| ||| ||||||| ||||| |||||||| | ||| |||||||||||||||   ||||||  ||||||||||    
T  26892730 gtttggtattggtagtcgagtgatcgttactactcgagacagaaatttgctagcaagtcatcatattgaaaaaacatatgaa 26892649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 29477035 - 29476962
Alignment:
Q  175 ttttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatgga 248  Q
    |||||||||| ||| ||| ||||||| | || |||||||||||||||||| || ||||||| | ||||| ||||    
T  29477035 ttttaaaccgagcagtaacttatgcttccgggcttccattggccttggaagtaataggttcaagcttgtttgga 29476962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 27664204 - 27664108
Alignment:
Q  155 tgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaag 251  Q
    |||||| || ||||| | |||||||||||||||| |  | |||||| ||||||||||||| || ||  || || | ||||||||||||| |||||||    
T  27664204 tgattccagctatgattatattttaaaccgtgcagttgaatatgcttctggccttccattagctttaaaagtagtgggttccaacttgtttggaaag 27664108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 28243850 - 28243906
Alignment:
Q  18 agtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaa 74  Q
    ||||||||||| |||||||||||||| | | | ||||||  ||||||||||||||||    
T  28243850 agtagagtgatcgttaccactcgagacagacatttgctaaaaagtcatgggattgaa 28243906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 28244016 - 28244100
Alignment:
Q  184 gtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 268  Q
    ||||| ||| ||||||| |||||||||||||||| || ||| || | ||||| ||||| | ||||||  |||||| |||||||||    
T  28244016 gtgcagtaacttatgcttctggccttccattggctttagaagtagtgggttcaaacttatttggaaataatataggagaatggaa 28244100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 5 - 352
Target Start/End: Original strand, 3280701 - 3281048
Alignment:
Q  5 gtttggtgttggcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 104  Q
    |||| ||||||| ||||| |||||  ||||||||||||| ||| ||||| || ||||||||||||||||| |||||||||||| | | |||||||| |||    
T  3280701 gtttagtgttggtagtagggtgatcattaccactcgagacaaacacttgttatcaagtcatgggattgaactaacatatgaaatagatgagttaaataag 3280800  T
Q  105 aaagaagcccttgaattgcttaggtggagggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctg 204  Q
     ||||||| |||||||||||||  |||| ||||||||||  ||| |||||| ||||||||||||||    || ||||||| ||| ||||||||||| |||    
T  3280801 gaagaagcacttgaattgcttacatggaaggcttttaaaagtaagcaagttaattcaagttatgagcacgttctaaaccgcgcagtaaattatgcttctg 3280900  T
Q  205 gccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtga 304  Q
    ||||||||||||| || ||| |||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||||| | |    
T  3280901 gccttccattggcattagaagtattaggttccaacttgtttggaaagaatataaaagagtggaattctttgttggatcgatatgaaaggattcctaataa 3281000  T
Q  305 agagattcaaaaaatacttcgtgtgagttttgatgctttggaggaaga 352  Q
    ||||||||| || ||||||   ||||||||||||||||||||||||||    
T  3281001 agagattcagaagatacttaaagtgagttttgatgctttggaggaaga 3281048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 251
Target Start/End: Complemental strand, 17992254 - 17992109
Alignment:
Q  106 aagaagcccttgaattgcttaggtggagggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctgg 205  Q
    ||||||| |||||| || | ||||||| ||| |||||||  ||  || ||||||| |||||| | | |||||||||||||| | | || |||||||||||    
T  17992254 aagaagctcttgaactgttaaggtggaaggcatttaaaggcaacgaaattgattctagttataactatattttaaaccgtgtagttaaatatgctgctgg 17992155  T
Q  206 ccttccattggccttggaaatattaggttccaacttgtatggaaag 251  Q
    ||| ||||| || || ||| || | ||||||||||||| |||||||    
T  17992154 cctcccattagctttagaagtagtgggttccaacttgtttggaaag 17992109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 5 - 367
Target Start/End: Complemental strand, 57434 - 57072
Alignment:
Q  5 gtttggtgttggcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 104  Q
    |||||||  ||| |||| ||||||  |||||||||||||  || | ||||||||| ||||||||||||||  | ||||||||| | |  |||||||  ||    
T  57434 gtttggtcctggtagtaaagtgatcattaccactcgagacgaacaattgctagcaggtcatgggattgaaagagcatatgaaatagataagttaaatgag 57335  T
Q  105 aaagaagcccttgaattgcttaggtggagggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctg 204  Q
    |||||||| ||||||||| | |||||||  ||||| |||  |||  ||||  || ||| ||  ||     ||||| ||| |||| ||| ||||||| | |    
T  57334 aaagaagctcttgaattgttgaggtggaatgctttcaaaaataacaaagtcaatccaaatttcgacaacgttttacaccttgcagtaacttatgcttcag 57235  T
Q  205 gccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtga 304  Q
    |||||||||||||||| ||| || | ||||| ||||||| ||||||| |||||| ||||||||| |||   ||  |||  |||||||| ||||| | | |    
T  57234 gccttccattggccttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaa 57135  T
Q  305 agagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 367  Q
    | |||| ||| | ||||||   || || ||||||||||||||||||||||||| || ||||||    
T  57134 aaagatccaagagatacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttt 57072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 367
Target Start/End: Original strand, 16692098 - 16692271
Alignment:
Q  194 ttatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaaga 293  Q
    ||||||| ||||||||||||| || || ||| || |||| || ||||||| ||||||| |||||||||||||||| |||   || |||||||||||| |     
T  16692098 ttatgcttctggccttccattagctttagaagtagtaggatctaacttgtttggaaagaatatagaagaatggaaatctacatttgatcgatatgaatgg 16692197  T
Q  294 attcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 367  Q
    |||||| || ||   ||||| |||||||||   || |||||||||  ||||||||||||||| | |||||||||    
T  16692198 attcctggtaaacgaattcacaaaatacttaaagtaagttttgatagtttggaggaagatgaaaagagtgtttt 16692271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 5 - 323
Target Start/End: Complemental strand, 5090090 - 5089772
Alignment:
Q  5 gtttggtgttggcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 104  Q
    ||||||| ||||||| ||||| ||  ||||||||||||| ||| ||||||||  | |||||||||||||  ||||||| |||  | | |  |||||  ||    
T  5090090 gtttggtcttggcagcagagtcatcattaccactcgagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgag 5089991  T
Q  105 aaagaagcccttgaattgcttaggtggagggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctg 204  Q
    || ||||| ||| ||||  | ||||||| ||||||||||  ||     ||| || ||||||||||  | |||||||||||||   ||| ||||||| |||    
T  5089990 aacgaagctcttcaattattaaggtggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctg 5089891  T
Q  205 gccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtga 304  Q
    ||||||||||||| || ||| |  | |||||||| |||| ||||||| |||||||| ||||||| |||||  | |||   |||||||| ||||||| | |    
T  5089890 gccttccattggctttagaagttgtgggttccaatttgtttggaaaggatatagaaaaatggaaatctttactagatgagtatgaaaggattcctaataa 5089791  T
Q  305 agagattcaaaaaatactt 323  Q
    ||| || ||||| ||||||    
T  5089790 agaaatccaaaagatactt 5089772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 26137033 - 26137176
Alignment:
Q  108 gaagcccttgaattgcttaggtggagggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggcc 207  Q
    ||||| ||||||||| ||||||||| ||||||||||  ||| ||   ||| ||||||||||| | |||||||||| ||||| | || |||||| ||||||    
T  26137033 gaagctcttgaattgtttaggtggatggcttttaaaagtaaccacaatgactcaagttatgattatattttaaacagtgcagttaaatatgcttctggcc 26137132  T
Q  208 ttccattggccttggaaatattaggttccaacttgtatggaaag 251  Q
    |||| || || || ||| || | ||||||| ||||| |||||||    
T  26137133 ttccgttagctttagaagtagtgggttccagcttgtttggaaag 26137176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 35769 - 35903
Alignment:
Q  5 gtttggtgttggcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 104  Q
    |||||||  ||| |||| ||||||  ||||||||||||| ||| | ||||||||||||||||||||||||  ||| || |||| | |  |||||||  ||    
T  35769 gtttggtcctggaagtaaagtgatcattaccactcgagacaaacaattgctagcaagtcatgggattgaaagaacgtacgaaatagataagttaaatgag 35868  T
Q  105 aaagaagcccttgaattgcttaggtggagggcttt 139  Q
    || ||||| ||||||||| | ||||||| ||||||    
T  35869 aacgaagctcttgaattgttgaggtggaaggcttt 35903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 28492 - 28619
Alignment:
Q  5 gtttggtgttggcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 104  Q
    |||||||  ||| |||| ||||||  ||||||||||| | ||| | ||||||||||||||||||||||||  | ||||||||| | |  |||||||  ||    
T  28492 gtttggtcctggaagtaaagtgatcattaccactcgaaacaaacaattgctagcaagtcatgggattgaaagagcatatgaaatagataagttaaatgag 28591  T
Q  105 aaagaagcccttgaattgcttaggtgga 132  Q
    || ||||| ||||||||| | |||||||    
T  28592 aacgaagctcttgaattgatgaggtgga 28619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 44012 - 44068
Alignment:
Q  18 agtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaa 74  Q
    ||||||||||| |||||||||||||| | | | ||||||  ||||||||||||||||    
T  44012 agtagagtgatcgttaccactcgagacagacatttgctaaaaagtcatgggattgaa 44068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 44178 - 44262
Alignment:
Q  184 gtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 268  Q
    ||||| ||| ||||||| |||||||||||||||| || ||| || | ||||| ||||| | ||||||  |||||| |||||||||    
T  44178 gtgcagtaacttatgcttctggccttccattggctttagaagtagtgggttcaaacttatttggaaataatataggagaatggaa 44262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 367
Target Start/End: Original strand, 31906285 - 31906458
Alignment:
Q  194 ttatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaaga 293  Q
    ||||||| |||| ||||||||||| |||  | |  | |||||||| || | ||||||| ||||| |||||||| | |||   ||  ||||||||||||      
T  31906285 ttatgcttctggacttccattggctttgatagttattggttccaatttatttggaaagaatatacaagaatgggaatctgcattacatcgatatgaaatc 31906384  T
Q  294 attcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 367  Q
    ||||| | | ||||||| ||||| |||||    || ||||||||||||||||||||||||||||  ||||||||    
T  31906385 attccaaataaagagatccaaaatatactcaaagtaagttttgatgctttggaggaagatgagaaaagtgtttt 31906458  T

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