View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_76 (Length: 363)
Name: NF6864A_low_76
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_76 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 363
Target Start/End: Original strand, 6236229 - 6236580
Alignment:
| Q |
9 |
gaaatgaagaagaaataacacaaaaggtaaacacatccatatctacagggctcactgcatatagtagtagtactagttctttgacatgatgtttgttcac |
108 |
Q |
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| T |
6236229 |
gaaatgaacaagaaataacacaaaaggtaaacacatccatatctacagggctcactgcatatagtagtagtactagttctttgacatgatgtttgttcac |
6236328 |
T |
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| Q |
109 |
cggtcaaggcaataatatcatggtgtttctaaattatggtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgcttta |
208 |
Q |
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| T |
6236329 |
tggtcaaggcaata-tatcatggtgtttctaaattttagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgcttta |
6236427 |
T |
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| Q |
209 |
gttaatagaaattgaaaacctaggtgataggtgaaaatctaannnnnnnnnnnnnngatcaagcgaagaaattcaataaaactagagagggccagaaccc |
308 |
Q |
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| T |
6236428 |
gttaatagaaattgaaaacctaggtgataggtgaaaatctaattttttttttttt--atcaagcgaagaaattcaataaaactgaagagggccagaaccc |
6236525 |
T |
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| Q |
309 |
ataacaaggtctacatcaggaagaaacaaaaacagaaaaggcagaattacatcaa |
363 |
Q |
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| T |
6236526 |
ataacaaagtctacatcaggaagaaacaaaaatagaaaaggcagaattacatcaa |
6236580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 6240393 - 6240435
Alignment:
| Q |
10 |
aaatgaagaagaaataacacaaaaggtaaacacatccatatct |
52 |
Q |
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| T |
6240393 |
aaatgaacatgaaataacacaaaaggtaaacacatccatatct |
6240435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 33891906 - 33891807
Alignment:
| Q |
147 |
gtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaaat |
246 |
Q |
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| T |
33891906 |
gtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaaat |
33891811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 33952342 - 33952441
Alignment:
| Q |
147 |
gtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaaat |
246 |
Q |
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| T |
33952342 |
gtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaaat |
33952437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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