View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_83 (Length: 359)
Name: NF6864A_low_83
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_83 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 45282305 - 45282648
Alignment:
| Q |
11 |
gagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccta |
110 |
Q |
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| T |
45282305 |
gagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcctt |
45282404 |
T |
|
| Q |
111 |
cgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgccttcccaatgaaccccattgcggtgttggctgcattcat |
210 |
Q |
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| T |
45282405 |
ggtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcat |
45282504 |
T |
|
| Q |
211 |
ggataatcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtttctatatcttttcaatgttagttatgttttcttcaaaa |
310 |
Q |
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| T |
45282505 |
ggataatcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaa |
45282604 |
T |
|
| Q |
311 |
atgaattttgagagtgatgccactttttctcatatactgtttct |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45282605 |
atgaattttgagagtgatgccactttttctcatatactctttct |
45282648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 45274060 - 45274405
Alignment:
| Q |
9 |
cagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
108 |
Q |
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| T |
45274060 |
cagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcc |
45274159 |
T |
|
| Q |
109 |
tacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgccttcccaatgaaccccattgcggtgttggctgcattc |
208 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| | |
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| T |
45274160 |
tacgtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgcggtgttggctgcacgc |
45274259 |
T |
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| Q |
209 |
atggataatcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtttctatatcttttcaatgttagttatgttttcttcaa |
308 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | | | | ||||||||||| ||||||||||||||||| |
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| T |
45274260 |
atggataatcaattaattagtaatttcgatcacactggctatatatgtcaatgttatatgtatatatttctcttttcaatgcgagttatgttttcttcaa |
45274359 |
T |
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| Q |
309 |
aaatgaattttgagagtgatgccactttttctcatatactgtttct |
354 |
Q |
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|||| ||||||||||||||||| ||||||||| ||||||| ||||| |
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| T |
45274360 |
aaataaattttgagagtgatgctactttttcttatatactctttct |
45274405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 9 - 267
Target Start/End: Original strand, 45293643 - 45293904
Alignment:
| Q |
9 |
cagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
108 |
Q |
| |
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|||||| || ||||||||||||| | ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45293643 |
cagagataacacaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
45293742 |
T |
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| Q |
109 |
tacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgccttcccaatgaaccccattgcggtgttggctgcattc |
208 |
Q |
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| ||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| | |
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| T |
45293743 |
ttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgc |
45293842 |
T |
|
| Q |
209 |
atggataatcaattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
267 |
Q |
| |
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|||||| |||||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |
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| T |
45293843 |
atggatgatcaattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45293904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 9 - 267
Target Start/End: Original strand, 45302603 - 45302864
Alignment:
| Q |
9 |
cagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
108 |
Q |
| |
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|||||| || ||||||||||||| | ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45302603 |
cagagataacacaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
45302702 |
T |
|
| Q |
109 |
tacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgccttcccaatgaaccccattgcggtgttggctgcattc |
208 |
Q |
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| ||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| | |
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| T |
45302703 |
ttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgc |
45302802 |
T |
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| Q |
209 |
atggataatcaattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
267 |
Q |
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|||||| |||||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |
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| T |
45302803 |
atggatgatcaattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45302864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 23 - 348
Target Start/End: Original strand, 45270547 - 45270870
Alignment:
| Q |
23 |
ttgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttctaaatg |
122 |
Q |
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||||||||| | ||||||||| ||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45270547 |
ttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctcctatgtttctaaatg |
45270646 |
T |
|
| Q |
123 |
ccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgccttcccaatgaaccccattgcggtgttggctgcattcatggataatcaatt |
222 |
Q |
| |
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|||| ||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
45270647 |
ccacagcttgcataccggcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaatt |
45270746 |
T |
|
| Q |
223 |
aattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtttctatatcttttcaatgttagtt-atgttttcttcaaaaatgaattttga |
321 |
Q |
| |
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||||||||| ||| || ||| |||||||||| | ||| | | | | | |||||||||||||||| |||| ||||||| |||||||||||||||||| |
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| T |
45270747 |
aattagtaacttctataacaccggctatatatatgtatg---tgtctatatatatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttga |
45270843 |
T |
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| Q |
322 |
gagtgatgccactttttctcatatact |
348 |
Q |
| |
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||||||||| ||| |||| ||| |||| |
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| T |
45270844 |
gagtgatgctactatttcacatctact |
45270870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 45293957 - 45294022
Alignment:
| Q |
278 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcat |
343 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
45293957 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcat |
45294022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 45302917 - 45302982
Alignment:
| Q |
278 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcat |
343 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
45302917 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcat |
45302982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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