View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_high_4 (Length: 542)

Name: NF6865A_high_4

Description: NF6865A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6865A_high_4

[»] chr2 (5 HSPs)

Alignment Details

Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 5)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 363; E-Value: 0

Query Start/End: Original strand, 156 - 542

Target Start/End: Original strand, 31658583 - 31658969

Alignment:

Q	156	ccaatgccaaactttgaaaataaatttacacttagacagaaacatatccatagccatcaaaatcctaactggtcataaacattctcaaattcaaatgatt	255	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31658583	ccaatgccaaactttgaaaataaatttacacttagacagaaacatatccatagccatcaaaatcctaactggtcataaacattctcaaattcaaatgatt	31658682	T

Q	256	caatcgatgatagcatagtggcatgtctcaaataatcaaaacaaaattcaaagttacatgatatgaggttatctgatgagaacaattgattttgagaaga	355	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31658683	caatcgatgatagcatagtggcacgtctcaaataatcaaaataaacttcaaagttacatgatatgaggttatctgatgagaacaattgattttgagaaga	31658782	T

Q	356	ataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaatggtgatggtggaaacgagttttcttctttaattggaatgttg	455	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31658783	ataatcatcatgaatctcttccttaggatcctcttttgtagatgcaagaaatggcaatggtgatggtggaaacgagttttcttctttaattggaatgttg	31658882	T

Q	456	ttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtg	542	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31658883	ttatcaaaactaagtaatatagaagagtcatttgatgacaaaatggattccaaatttatatctgaatgcaaataacttttgcaagtg	31658969	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2

Raw Score: 52; E-Value: 1e-20

Query Start/End: Original strand, 236 - 485

Target Start/End: Complemental strand, 31650553 - 31650298

Alignment:

Q	236	attctcaaattcaaatgattcaatcgatgatagcatagtggcatgtctcaaataatcaaaacaaaattcaaagttacatgatatgaggttatctgatgag	335	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\| \| \| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \| \|\|\| \|\| \|\|\| \|\| \|\| \| \|\|\|\|
T	31650553	attctcaaattaaaaagattcactcgatgatgactcactgacatgtctcaaataatcaaaataaacatcaaaatcgcataattggagattctccggtgag	31650454	T

Q	336	aacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaat---ggtgatggtggaaacgagt	432	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\| \| \|
T	31650453	aacaattggttttgaggaaaatgatcatgatgtatctcttccttgggatctccttttgtagatgcaagaagtggcaatggtggtgatggtcgaaatggat	31650354	T

Q	433	tttcttctttaattggaatgttg---ttatcaaaactgagtaatatagaagagtca	485	Q
		\|\|\|\|\| \|\|\|\| \|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	31650353	attcttgtttatttgaaatgttgttattatcgaaactaagtaatattgaagagtca	31650298	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3

Raw Score: 38; E-Value: 0.000000000003

Query Start/End: Original strand, 449 - 542

Target Start/End: Complemental strand, 31657342 - 31657249

Alignment:

Q	449	aatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtg	542	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|
T	31657342	aatgttgttatcgaaactaagtaatatagaagagtcatcgtagcacaaaatggattccaattttatgtctgaatggtaagagcttttgcaagtg	31657249	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4

Raw Score: 38; E-Value: 0.000000000003

Query Start/End: Original strand, 18 - 55

Target Start/End: Original strand, 31658521 - 31658558

Alignment:

Q	18	gacatcataagttaaacgatcaaataaatctcccatta	55	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31658521	gacatcataagttaaacgatcaaataaatctcccatta	31658558	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5

Raw Score: 29; E-Value: 0.0000008

Query Start/End: Original strand, 369 - 413

Target Start/End: Complemental strand, 31657434 - 31657390

Alignment:

Q	369	atctcttccttaggatcctctattgtagatgcaagaaatggcaat	413	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	31657434	atctcttccttgggttcctcttttgtagatgcaagaagtggcaat	31657390	T

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