View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_100 (Length: 296)

Name: NF6865A_low_100
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_100
NF6865A_low_100
[»] chr4 (1 HSPs)
chr4 (14-296)||(40660523-40660806)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 40660523 - 40660806
Alignment:
Q  14 gctaaatccagaataatctgcacttctatttccccttgagtaacttgctcgaaatcaaataacaaagacaaccacaatcaagtagacaaaaagtagcaga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40660523 gctaaatccagaataatctgcacttctatttccccttgagtaacttgctcgaaatcaaataacaaagacaaccacaatcaagtggacaaaaagtagcaga 40660622  T
Q  114 ctggcctcattaacatgtgcttcatgcttaattgcaatcataacaaatgtacatgatgtctattgtataacaaaccggaggtagtagtaaaaaactagcg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40660623 ctggcctcattaacatgtgcttcatgcttaattgcaatcataacaaatgtacatgatgtctattgtataaaaaaccggaggtagtagtaaaaaactagcg 40660722  T
Q  214 cgtaatctataactcctatatctctaagatgttgatcttggttatggctgctgccttttc-attacttcctatttcttctgtga 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  40660723 cgtaatctataactcctatatctctaagatgttgatcttggttatggctgctgccttttctattgcttcctatttcttctgtga 40660806  T

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