View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_101 (Length: 296)
Name: NF6865A_low_101
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_101 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 27203280 - 27203010
Alignment:
| Q |
20 |
atcacttggtactctagaacagtgaccaaaagcaaaaattaatagcaaaattgataaattttatacgaactcacactgcatgaatcatattccatgtgaa |
119 |
Q |
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| T |
27203280 |
atcacttggtactctagaacagtgaccaaaagcaaaaattaataggaaaattgataaattttatacgaactcacactgcatgaatcatattccatgtgaa |
27203181 |
T |
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| Q |
120 |
aagttctcatgttaaccaaatcgctcttaaaagcagcatcaactgagggaccatcattaccctgaactgtaaacaacacaccaaaaggtccaaaataatt |
219 |
Q |
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|||| ||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27203180 |
aagtcctcatgttaaccaaatcgcccttaacagcagcatcaaccgagggaccatcattaccctgaactgtaaacaacacaccaaaagggccaaaataatt |
27203081 |
T |
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| Q |
220 |
tcagcattcttaaaacacagcagtgccaaattaaccttaaacacatcattaaacatataagacgatgatgt |
290 |
Q |
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| T |
27203080 |
tcagcattcttaaaacacagcagtgccaaattaaccttaaacacatcattaaacatataagacgatgatgt |
27203010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 16421772 - 16421718
Alignment:
| Q |
87 |
aactcacactgcatgaatcatattccatgtgaaaagttctcatgttaaccaaatc |
141 |
Q |
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| T |
16421772 |
aactcacactgcatgcatcaaattccatgtgaaacgtcctcaagttaaccaaatc |
16421718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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