View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_105 (Length: 293)
Name: NF6865A_low_105
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_105 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 13609047 - 13608925
Alignment:
| Q |
14 |
atattgccaggtaaagttgaagttttgtttcccaataagcatgttaactttttaataatttttccaatctctgcatattctggcctagaagaccagagga |
113 |
Q |
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| T |
13609047 |
atattgccaggtaaagttgaagttttgtttcccaataagcatgttaactttttaataatttttccaatctctgcatattctggcctagaagaccagagga |
13608948 |
T |
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| Q |
114 |
tagaaattccaaatcatcacatg |
136 |
Q |
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| T |
13608947 |
tagaaattccaaatcatcacatg |
13608925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 194 - 293
Target Start/End: Complemental strand, 13608867 - 13608768
Alignment:
| Q |
194 |
tcatgacagtaaacatcaaatataatgacaaagtgctactgtaattaattgaaaaattcagtcaaatccttgaaaattattcgttcaatgaaacaggtaa |
293 |
Q |
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| T |
13608867 |
tcatgacagtaaacatcaaatataatgacaaagtgctactgtaattaattgaaaaattcagtcaaatccttgaaaattattcgttcaatgaaacaggtaa |
13608768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 31244988 - 31244876
Alignment:
| Q |
22 |
aggtaaagttgaagttttgtttcccaataagcatgttaactttttaataatttttccaatctctgcatattctggcctagaagaccagaggatagaaatt |
121 |
Q |
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| T |
31244988 |
aggtaaagttgaagatttgtgactcaataagcatgttacctctttaataatttttccaatctctgcatattgtggcctaaaagaccagaggatagaaata |
31244889 |
T |
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| Q |
122 |
ccaaatcatcaca |
134 |
Q |
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| T |
31244888 |
ccaaatcatcaca |
31244876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 6472683 - 6472799
Alignment:
| Q |
20 |
ccaggtaaagttgaagttttgtttcccaataagcatgttaactttttaataatttttccaatctctgcatattctggcctagaagaccagaggatagaaa |
119 |
Q |
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|||| ||||||| ||| || ||||||||||||| | ||| |||||||||||||||| ||||||| ||||||| || |||| |||||||||| ||||||| |
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| T |
6472683 |
ccagttaaagtttcagtcttatttcccaataagcttcttacctttttaataattttttcaatctccgcatattgtgacctaaaagaccagagaatagaaa |
6472782 |
T |
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| Q |
120 |
ttccaaatcatcacatg |
136 |
Q |
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| T |
6472783 |
ttccaaatcatcacatg |
6472799 |
T |
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