View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_106 (Length: 291)

Name: NF6865A_low_106
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_106
NF6865A_low_106
[»] chr4 (1 HSPs)
chr4 (8-291)||(55200957-55201230)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 55201230 - 55200957
Alignment:
Q  8 tcataggaaccgacaatgaatcccaaaaaactcactatctgcacattagtagtagagtgtttctttatctatcctcacacttgcttcagagtatgaaatc 107  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||| |||||||||||     
T  55201230 tcataagaaccgataatgaatcccaaaaaactcactatctgcacattagcagtagagtgtttctttatctatcctcacacttatttcggagtatgaaatt 55201131  T
Q  108 cgaaaagttaaaaggtgttggacaatattttaaacgtgtttg-acgcttttctgattatataatctgaaattcgtatggaatgcaagaaaccattacact 206  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  55201130 cgaaaaattaaaaggtgttggacaatattttaaacgtgtttgtacgcttttctgattatataatctgaaattcgtatggaatgcaagaagccattacact 55201031  T
Q  207 tttcagttaactaccgttaacaggaacatgcaaagtttaattaactatcattaaagacattttccataatttaaggtgcctatga 291  Q
    ||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55201030 tttcagttaactac-----------acatgcaaagtttaattaactatcattaaagacattttccataatttaaggtgcctatga 55200957  T

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