View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_107 (Length: 289)

Name: NF6865A_low_107
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_107
NF6865A_low_107
[»] chr3 (6 HSPs)
chr3 (19-276)||(11897148-11897405)
chr3 (18-276)||(26432588-26432846)
chr3 (18-175)||(23424497-23424654)
chr3 (18-172)||(38647179-38647333)
chr3 (18-133)||(53608336-53608451)
chr3 (84-133)||(49149802-49149851)
[»] chr8 (4 HSPs)
chr8 (19-276)||(23132475-23132732)
chr8 (25-175)||(26587230-26587380)
chr8 (113-271)||(14760016-14760174)
chr8 (18-46)||(38348466-38348494)
[»] chr1 (5 HSPs)
chr1 (19-276)||(20284849-20285106)
chr1 (17-184)||(50236550-50236717)
chr1 (17-172)||(50451893-50452048)
chr1 (75-133)||(23465403-23465461)
chr1 (21-130)||(1524969-1525078)
[»] chr2 (11 HSPs)
chr2 (19-276)||(14653570-14653827)
chr2 (23-172)||(26791322-26791471)
chr2 (18-229)||(35135159-35135370)
chr2 (18-229)||(40328174-40328385)
chr2 (75-184)||(16322502-16322611)
chr2 (96-169)||(3779048-3779121)
chr2 (96-172)||(573266-573342)
chr2 (91-177)||(42403209-42403295)
chr2 (27-172)||(177504-177649)
chr2 (96-157)||(19265490-19265551)
chr2 (121-172)||(35062956-35063007)
[»] scaffold0036 (1 HSPs)
scaffold0036 (82-187)||(75967-76072)
[»] chr4 (4 HSPs)
chr4 (18-169)||(54477407-54477558)
chr4 (23-175)||(46784469-46784621)
chr4 (18-109)||(33803974-33804065)
chr4 (91-172)||(3881787-3881868)
[»] chr5 (3 HSPs)
chr5 (66-172)||(32874457-32874563)
chr5 (18-172)||(7817131-7817285)
chr5 (75-177)||(6641008-6641110)
[»] chr6 (4 HSPs)
chr6 (18-175)||(24893833-24893990)
chr6 (75-175)||(24990660-24990760)
chr6 (75-188)||(13599639-13599752)
chr6 (65-172)||(27852952-27853059)
[»] chr7 (4 HSPs)
chr7 (75-188)||(16769946-16770059)
chr7 (75-188)||(27781614-27781727)
chr7 (99-169)||(1353794-1353864)
chr7 (27-172)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 11897148 - 11897405
Alignment:
Q  19 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897148 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 11897247  T
Q  119 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  11897248 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcaccc 11897347  T
Q  219 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897348 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 11897405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 26432846 - 26432588
Alignment:
Q  18 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 117  Q
    |||||||||||||| |||||||||||||| ||  ||||  | |  ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |    
T  26432846 gacatcaccatcaaactcatcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtc 26432747  T
Q  118 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcacc 217  Q
    |||||||||||||||| |||||||||||||| |||||| |||||||||||||||| || |||||||||||||| || ||| ||||||||||||||| |||    
T  26432746 tccgacaaggtgatccattgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 26432647  T
Q  218 catccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 276  Q
     || |||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||    
T  26432646 gattcaaatcactcctacggggccgcatttatcccacctcctttttgcaaatgatgtcc 26432588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 23424497 - 23424654
Alignment:
Q  18 gacatcaccatcaagctcatcatgcattgcgt-agcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggc 116  Q
    ||||||||||||||||||||||| ||||| || | || ||||   || ||| ||| | ||||| || |||||  |||| |||||||||||  | |||||     
T  23424497 gacatcaccatcaagctcatcatacattgtgtcacctcctccacatt-ctcaatattatggaaaggtaacaaaatgccccctttcaagcccacacatggt 23424595  T
Q  117 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 175  Q
    ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  23424596 ctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 23424654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 38647333 - 38647179
Alignment:
Q  18 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 117  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  | |||||| ||||||||||| || ||  |||| ||||| |||||||| || || |    
T  38647333 gacatcaccatcaagctcatcatgcattgtgtttcatcatccaccttctctattctttggaacggtaataaaatgcccccttttaagccttcccacggtc 38647234  T
Q  118 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 172  Q
    || |||||||||||||| | || || || || |||||  | ||||||||||||||    
T  38647233 tcagacaaggtgatccgctctctccctacctcttcattttatgcatggaaaagct 38647179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 53608451 - 53608336
Alignment:
Q  18 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 117  Q
    ||||||||||||||||||||||||||||| ||  | ||  |||  | |||||| |||||||| || |||||  ||||  |||||| |||||| ||||| |    
T  53608451 gacatcaccatcaagctcatcatgcattgtgtttcctcctctaccttctctattctttggaatggaaacaaaatgccttctttcaggccttcacatggtc 53608352  T
Q  118 tccgacaaggtgatcc 133  Q
    || |||| ||||||||    
T  53608351 tcagacagggtgatcc 53608336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 49149851 - 49149802
Alignment:
Q  84 aacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatcc 133  Q
    ||||| ||||||| |||||||||| ||||||| || ||||||||||||||    
T  49149851 aacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 49149802  T

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Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 23132732 - 23132475
Alignment:
Q  19 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 118  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132732 acatcaccatcaagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 23132633  T
Q  119 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 218  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132632 ccgacaaggtgatacgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 23132533  T
Q  219 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 276  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23132532 atccaaatcacccctacggggccccatttatcccatctcctatttgcagatgatgtcc 23132475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 175
Target Start/End: Original strand, 26587230 - 26587380
Alignment:
Q  25 ccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgaca 124  Q
    ||||||| |||||||||||||||||  ||||  |||  | | | || ||||| || || ||||| ||||| || ||||||||| ||||||||||||||||    
T  26587230 ccatcaaactcatcatgcattgcgtcacttcatctaccttcaccatcctttgaaatggtaacaaattgccccccttcaagcctactcatggcctccgaca 26587329  T
Q  125 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 175  Q
    |||||| || ||||| || || || ||||| ||||| ||||| || |||||    
T  26587330 aggtgacccattgtctccctacctcttcattctttgtatggagaaactttc 26587380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 271
Target Start/End: Original strand, 14760016 - 14760174
Alignment:
Q  113 tggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgg 212  Q
    |||||| || ||||| |||||||||||||| || || ||||| ||||| ||||||||||| ||   |||||| || ||||| |||   |||||||| |||    
T  14760016 tggccttcgccaaggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgg 14760115  T
Q  213 gcacccatccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 271  Q
    | |||  | ||||||||   ||||||||| ||  |||| || || ||||||||||||||    
T  14760116 gaaccggttcaaatcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 38348466 - 38348494
Alignment:
Q  18 gacatcaccatcaagctcatcatgcattg 46  Q
    |||||||||||||||||||||||||||||    
T  38348466 gacatcaccatcaagctcatcatgcattg 38348494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 20284849 - 20285106
Alignment:
Q  19 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||    
T  20284849 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcct 20284948  T
Q  119 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 218  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20284949 gcgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 20285048  T
Q  219 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285049 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 20285106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 50236717 - 50236550
Alignment:
Q  17 ggacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggc 116  Q
    ||||||||||| ||| |||||||||||||| ||  | || || |  ||||||||  | ||||||||||||||| |||| |||||||||||| ||||||||    
T  50236717 ggacatcaccaccaaactcatcatgcattgtgtctcctcacccacctactctatcttatggaacgggaacaagatgccccctttcaagcctactcatggc 50236618  T
Q  117 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctat 184  Q
    ||| || ||||||||||| | |||||||| ||||||||| | || ||||| || || |||| ||||||    
T  50236617 ctcagataaggtgatccgctttccccttaccttttcatcttgtgtatggagaaactatcagttgctat 50236550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 50451893 - 50452048
Alignment:
Q  17 ggacatcaccatcaagctcatcatgcattgcgt-agcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatgg 115  Q
    ||||||||||||||| || ||||||||||| || | || |||| | || ||||||  | ||||| || |||||  |||||| |||||| ||| | |||||    
T  50451893 ggacatcaccatcaaacttatcatgcattgtgtcacctcctcc-actttctctatcttatggaatggtaacaaaatgccgcatttcaaacctacacatgg 50451991  T
Q  116 cctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 172  Q
    ||||||||||||||||||| | || ||||| || ||||| ||||| ||||| |||||    
T  50451992 cctccgacaaggtgatccgctttctccttacctcttcattctttgtatggagaagct 50452048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 23465403 - 23465461
Alignment:
Q  75 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatcc 133  Q
    ||||| || ||||| ||||||| |||||||||| ||||||| || ||||||||||||||    
T  23465403 tggaatggtaacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 23465461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 1524969 - 1525078
Alignment:
Q  21 atcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctcc 120  Q
    ||||||||||| |||||||||||||| ||  | ||||||   | |||||| |||||||| || ||||| || || |||||||||||||| || || || |    
T  1524969 atcaccatcaaactcatcatgcattgtgttacctctcctgccttctctattctttggaatggtaacaaattacctcctttcaagccttcccacggtcttc 1525068  T
Q  121 gacaaggtga 130  Q
    | ||||||||    
T  1525069 ggcaaggtga 1525078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 14653827 - 14653570
Alignment:
Q  19 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 118  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14653827 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcct 14653728  T
Q  119 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 218  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||    
T  14653727 ccaacaaggtgatccgttgtccccttattttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcaccc 14653628  T
Q  219 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 276  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14653627 atccaaatcactcctacggggccgcatttatcccatctcctatttgcagatgatgtcc 14653570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 26791322 - 26791471
Alignment:
Q  23 caccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccga 122  Q
    |||||||||||||||||||||||||||  ||||  | || | |||||| |||||||| || || | |||||| |||||| ||||| ||||||||||| |     
T  26791322 caccatcaagctcatcatgcattgcgttacttcatccagcttctctattctttggaatggaaataggttgcctcctttcgagcctactcatggcctcagg 26791421  T
Q  123 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 172  Q
    || ||||||||| | ||||| || ||||| || ||||||||||| |||||    
T  26791422 cagggtgatccgctttccccgtacctttttattctttgcatggagaagct 26791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 35135370 - 35135159
Alignment:
Q  18 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 117  Q
    ||||| |||||||| |||||||||||||| ||  | || || || ||||| ||  | ||||| || |||||| |  | |||||||||||| ||||||| |    
T  35135370 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcaattttatggaatggaaacaagctctctcctttcaagcctactcatggac 35135271  T
Q  118 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcacc 217  Q
    | || |||||||| |||||||| ||||||||||||||||| || |||||||| || || | ||| ||||| || || |||  |||||| ||||||| |||    
T  35135270 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaaactctctgttgcaatcaattccgctgtcaaccaagggagatgggaacc 35135171  T
Q  218 catccaaatcac 229  Q
     || ||||||||    
T  35135170 gatacaaatcac 35135159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 40328174 - 40328385
Alignment:
Q  18 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 117  Q
    ||||| |||||||| |||||||||||||| ||  | || || || ||||| ||  | ||||| || |||||| |  | |||||||||||| ||||||| |    
T  40328174 gacattaccatcaaactcatcatgcattgtgttacctcaccgagctactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggac 40328273  T
Q  118 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcacc 217  Q
    | || |||||||| |||||||| ||||||||||||||||| || |||||||| || || | ||| ||||| || || |||  |||||| ||||||| |||    
T  40328274 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaaactctctgttgcaatcaattccgctgtcaaccaagggagatgggaacc 40328373  T
Q  218 catccaaatcac 229  Q
     || ||||||||    
T  40328374 gatacaaatcac 40328385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 16322502 - 16322611
Alignment:
Q  75 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 174  Q
    ||||| || |||||| |||| |||||||||||  |||||||||| ||||||||||| ||| | || || || |||||||| |||||||||||||| ||||    
T  16322502 tggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgacccgctttctccgtaccttttcatactttgcatggaaaaacttt 16322601  T
Q  175 cagctgctat 184  Q
    | | ||||||    
T  16322602 ctgttgctat 16322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 3779121 - 3779048
Alignment:
Q  96 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 169  Q
    |||||||||||| ||||||| || || |||||||| ||| |||| ||||||||||||||||| || ||||||||    
T  3779121 cctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaa 3779048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 573266 - 573342
Alignment:
Q  96 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 172  Q
    ||||| || ||||| ||||||||| |||||||||||||| | || ||||| || ||||||||||||||||| |||||    
T  573266 ccttttaaaccttcccatggcctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagct 573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 42403295 - 42403209
Alignment:
Q  91 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcag 177  Q
    |||| |||||||||||  ||||||||||||| |||||||| ||  | || |||||||| || || || |||||||||||||||||||    
T  42403295 tgcctcctttcaagcccactcatggcctccggcaaggtgaccctctctcaccttatctatttatactgtgcatggaaaagctttcag 42403209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 172
Target Start/End: Original strand, 177504 - 177649
Alignment:
Q  27 atcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaag 126  Q
    ||||| |||||||||||||| ||  ||||| | |  | |||| | |||||||| || ||||| | ||| ||| |||||||| ||||||| ||  ||||||    
T  177504 atcaaactcatcatgcattgtgtcacttcttcaacattctctgttctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaag 177603  T
Q  127 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 172  Q
    |||| || ||||| ||||| || |||||| | ||||||||||||||    
T  177604 gtgaccctttgtctccttacctattcatcatctgcatggaaaagct 177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 19265490 - 19265551
Alignment:
Q  96 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcct 157  Q
    |||||||||||| ||||||| || || |||||||| ||| |||| |||||||||||||||||    
T  19265490 cctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcct 19265551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 35063007 - 35062956
Alignment:
Q  121 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 172  Q
    |||||||||||||  | ||||| ||||||||||||||||| |||||||||||    
T  35063007 gacaaggtgatccactatccccctatcttttcatcctttgtatggaaaagct 35062956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 187
Target Start/End: Original strand, 75967 - 76072
Alignment:
Q  82 ggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgc 181  Q
    |||||||| ||||  | ||||||||| ||||||| ||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| || | |||    
T  75967 ggaacaagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagctctctgttgc 76066  T
Q  182 tatcaa 187  Q
    ||||||    
T  76067 tatcaa 76072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 54477558 - 54477407
Alignment:
Q  18 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 117  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  |||| ||| |||||||| || |||||| | ||  ||||||||||| | ||||| |    
T  54477558 gacatcaccatcaagctcatcatgcattgtgtttcatcatcaaaatactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtc 54477459  T
Q  118 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 169  Q
    | || ||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  54477458 tgcgccaaggtgatcctttgtccccttatctcttcattctttgcatggaaaa 54477407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 46784621 - 46784469
Alignment:
Q  23 caccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccga 122  Q
    |||||||||||||||||||||||| ||  | ||  | | || |||  | |||||||| || || || |||||||||||||| ||| ||||||||||  ||    
T  46784621 caccatcaagctcatcatgcattgtgttacgtcatcaactttctccgtcctttggaatggaaataaattgccgcctttcaaacctactcatggccttaga 46784522  T
Q  123 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 175  Q
    |||||||||||  | || || || || ||||||||||||||| |||| |||||    
T  46784521 caaggtgatcctctatctccctacctcttcatcctttgcatgaaaaaactttc 46784469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 33803974 - 33804065
Alignment:
Q  18 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttc 109  Q
    ||||||||||||||||||||||||||||| ||  | ||  |||  ||||||||||| ||||| || |||||  |||| ||||||||||||||    
T  33803974 gacatcaccatcaagctcatcatgcattgtgtttcctcatctacatactctatactgtggaatggaaacaaaatgcctcctttcaagccttc 33804065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 3881787 - 3881868
Alignment:
Q  91 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 172  Q
    |||||| |||||| ||| | |||||||||||||||||||||||| | || | ||| || ||||| ||||| |||||||||||    
T  3881787 tgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagct 3881868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 172
Target Start/End: Complemental strand, 32874563 - 32874457
Alignment:
Q  66 tctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatgg 165  Q
    ||||| ||||| || |||||||||||||| |||||||||||||||||||||||||| ||||| || ||| | || || ||| | |||||| |||||||||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  166 aaaagct 172  Q
    |||||||    
T  32874463 aaaagct 32874457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 7817131 - 7817285
Alignment:
Q  18 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 117  Q
    |||||||| |||||||||||||||||||| ||| | ||  | |  ||||||||  | ||||| ||||||||  | ||  ||||||||||| ||||||| |    
T  7817131 gacatcacaatcaagctcatcatgcattgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 7817230  T
Q  118 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 172  Q
    || |||| ||||| || || || ||||| |||||||| |||||||||||||||||    
T  7817231 tcagacagggtgaccctttatctccttaccttttcattctttgcatggaaaagct 7817285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 6641110 - 6641008
Alignment:
Q  75 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 174  Q
    |||||||| |||||  || | |||||||||||  |||||||||||||| ||||||||||| | || || || || |||||  | ||||||||||| ||||    
T  6641110 tggaacggaaacaaaatgtcccctttcaagcccactcatggcctccgaaaaggtgatccgctctctccctacctcttcattatgtgcatggaaaaacttt 6641011  T
Q  175 cag 177  Q
    |||    
T  6641010 cag 6641008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 24893990 - 24893833
Alignment:
Q  18 gacatcaccatcaagctcatcatgcattgcgt-agcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggc 116  Q
    ||||||||||||||||||||||||||||| || | || ||||   || ||| ||| | ||||| || |||||  |||| |||||||||||  | |||||     
T  24893990 gacatcaccatcaagctcatcatgcattgtgtcacctcctccacatt-ctccatattatggaatggtaacaaaatgccccctttcaagcccacacatggt 24893892  T
Q  117 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 175  Q
    ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  24893891 ctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 24893833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 24990760 - 24990660
Alignment:
Q  75 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 174  Q
    |||||||| |||||  |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| ||||||||||| |||||||    
T  24990760 tggaacggtaacaaaatgccccctttcaagcccacccatggtctcagacaaggtgacccgctctctccttatcttttcattctttgcatggagaagcttt 24990661  T
Q  175 c 175  Q
    |    
T  24990660 c 24990660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 13599639 - 13599752
Alignment:
Q  75 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 174  Q
    ||||| || |||||||| ||||  ||||||||| ||||||  ||||| |||||||||||  | || |||||||| |||||| | || |||||||| ||||    
T  13599639 tggaatggtaacaagtttccgcaattcaagcctactcatgatctccgtcaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaacttt 13599738  T
Q  175 cagctgctatcaac 188  Q
    ||||||| ||||||    
T  13599739 cagctgccatcaac 13599752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 172
Target Start/End: Complemental strand, 27853059 - 27852952
Alignment:
Q  65 ctctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 164  Q
    |||||| ||||||||||| |||||  ||||  ||||||||||||||||||| ||  ||||||| || || || || |||||  | ||||||||||| |||    
T  27853059 ctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaagacaaggggaccctttatctccttacttattcatcctttgtatg 27852960  T
Q  165 gaaaagct 172  Q
    ||||||||    
T  27852959 gaaaagct 27852952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 16770059 - 16769946
Alignment:
Q  75 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 174  Q
    ||||| || ||||| ||||||| |||||| ||| ||||||| || ||||||||||||||  | || |||||||| |||||| | || |||||||| || |    
T  16770059 tggaatggtaacaaattgccgcatttcaaacctactcatggtcttcgacaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaactct 16769960  T
Q  175 cagctgctatcaac 188  Q
    |||| || ||||||    
T  16769959 cagcagccatcaac 16769946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 27781727 - 27781614
Alignment:
Q  75 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 174  Q
    ||||||||||||||  |||| || || |||||  ||||||||||| |||||||||| ||  | || ||||| || |||||||| |||||||| |||||||    
T  27781727 tggaacgggaacaaaatgcctccatttaagccaactcatggcctcagacaaggtgaccctctttcaccttacctcttcatcctctgcatggagaagcttt 27781628  T
Q  175 cagctgctatcaac 188  Q
      | ||||||||||    
T  27781627 tggttgctatcaac 27781614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 1353864 - 1353794
Alignment:
Q  99 ttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 169  Q
    ||||||||| |||||||||||  ||||||||||||  | || || ||||||||||| ||||| ||||||||    
T  1353864 ttcaagcctactcatggcctcatacaaggtgatccactctcaccatatcttttcattctttgtatggaaaa 1353794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 1579304 - 1579159
Alignment:
Q  27 atcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaag 126  Q
    ||||| |||||||||||||| ||  ||||| | | || |||||| || | |||  | ||||||||||| || ||  | ||| ||||||| ||| |||| |    
T  1579304 atcaatctcatcatgcattgtgtttcttcttcaactttctctattctctagaatagaaacaagttgcctccctttcatcctactcatgggctcagacagg 1579205  T
Q  127 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 172  Q
    |||||||| | |||||||| || || || |||||||||||||||||    
T  1579204 gtgatccgctctccccttacctctttattctttgcatggaaaagct 1579159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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