View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_116 (Length: 285)
Name: NF6865A_low_116
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_116 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 39626765 - 39626500
Alignment:
| Q |
14 |
gaacatctaaaacccataattgtcacatttaacatagtcaaccagaataagtactttttctccgtgaattcatgcttagaatctatacagaacaactagt |
113 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39626765 |
gaacatctaaaacccatagttgtcacatttaacatagtcaaccagaataagtactttttctccgtgaattcatgcttataatctatacagaacaactagt |
39626666 |
T |
|
| Q |
114 |
tgtgaatgtccacccattacatacgctacggcttttatctttccaaataatttttgtactcacttaaatgctcctaaaagcaaaaaagctcagcgacaaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39626665 |
tgtgaatgtccacccattacatacgctacggcttttatctttccaaataatttttgtacccacttaaatgctcctaaaagcaaaaaagctcagcgacaaa |
39626566 |
T |
|
| Q |
214 |
ccttggcagtgtatagtgcttatttctggccctttcatctctatcccatcattgtcaagtaaaaca |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39626565 |
ccttggcagtgtatagtgcttatttctggccctttcatctctatcccatcattgtcaagtaaaaca |
39626500 |
T |
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