View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_117 (Length: 285)
Name: NF6865A_low_117
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_117 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 6 - 285
Target Start/End: Complemental strand, 34633310 - 34633031
Alignment:
| Q |
6 |
gtttggtgtttgtgtttgaggtagtacacacacacttacactttttgagggaaaattttatttttgaatacgtggttaattctcgtctataacaagttgt |
105 |
Q |
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| T |
34633310 |
gtttggtgtttgtgtttgaggtagtacacacacacttacactttttgagggaaaattttatttttgaatacgtggttaattctcctctataacaagttgt |
34633211 |
T |
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| Q |
106 |
atttgttagaaatattgaattttgtcttcatttttgtgttctgagttgagtatataaatatatttttaaattgtgtagaaaaatacttggggcagtcttc |
205 |
Q |
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| T |
34633210 |
atttgttagaaatattgaattttgtcttcatttttgtgttctgagttgagtatataaatatatttttaaattgtgtagaaaaatacttggggcagtcttc |
34633111 |
T |
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| Q |
206 |
catatgctgaggactgagaaatcattacagttgattgtggcaagttataagcttctggttgatttggaaaaggtatgtga |
285 |
Q |
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| T |
34633110 |
catatgctgaggactgagaaatcattacagttgattgtggcaagttataagcttctggttgatttggaaaaggtatgtga |
34633031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 30 - 285
Target Start/End: Complemental strand, 14301527 - 14301269
Alignment:
| Q |
30 |
tacacacacacttacactttttgagggaaaattttattttt--gaatacgt-ggttaattctcgtctataa-caagttgtatttgttagaaatattgaat |
125 |
Q |
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| T |
14301527 |
tacacacatgcttatactttttgagagaaaattttatttttttgaatatataggttaattctcctctataagcaagttgtatttatcaaaaatattgaat |
14301428 |
T |
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| Q |
126 |
tttgtcttcatttttgtgttctgagttgagtatataaatatatttttaaattgtgtagaaaaatacttggggcagtcttccatatgctgaggactgagaa |
225 |
Q |
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| T |
14301427 |
tttgttatcacttttgtgttctacattgagtatatgaatatatttt-aaattgtgtagaaaaatatgtggggtagtcttccatatgctgaggactgtgaa |
14301329 |
T |
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| Q |
226 |
atcattacagttgattgtggcaagttataagcttctggttgatttggaaaaggtatgtga |
285 |
Q |
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| T |
14301328 |
gtcattacagttgataatggcatgtcataagcttctggttgatttggaaaaggtatgtga |
14301269 |
T |
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