View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_12 (Length: 464)
Name: NF6865A_low_12
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 45099027 - 45099455
Alignment:
| Q |
19 |
acatcaaaggaaagcaagttgagcgaagtactaacaatatcacaaaaatgcaaccgaatcaaatgtgaaacgccatcacgagccacaggaaaattccatg |
118 |
Q |
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| T |
45099027 |
acatcaaagtaaagcaagttgagcgaagtactaacaatatcacaaaaatgcaaccgaatcaaatgtgaaacgccatcacgagccacaggaaaattccatg |
45099126 |
T |
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| Q |
119 |
ttatattaaaccttgaagctaaacttgagttttccctattcatctgttgagcagtcatgtaaacattttcaggtgcgatctctggagtagcacctccctt |
218 |
Q |
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| T |
45099127 |
ttatattaaaccttgaagctaaacttgagttttccctattcatctgttgagcagtcatgtaaacattttcaggcgcgatctctggagtagcacctccctt |
45099226 |
T |
|
| Q |
219 |
ctggtaatcaggggtatgagtgcttactgcatgtttagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagtgtatcatta |
318 |
Q |
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| T |
45099227 |
ctggtaatcaggtgtatgagtgcttactgcatgtttagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtgtcatta |
45099326 |
T |
|
| Q |
319 |
aaaggagttatttccatacctcctacattaatcctatgaacagtttccaaaacctgagatgaaagatttctatactcttccacaccagaaggaccaacca |
418 |
Q |
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| T |
45099327 |
aaaggagttattttcatacctcctacattaatcctatgaacagtttccaaaacctgagatgaaagatttctatactcttccacaccagaaggaccaacca |
45099426 |
T |
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| Q |
419 |
accttgttccataatctataacaaaatct |
447 |
Q |
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| T |
45099427 |
accttgttccataatctataacaaaatct |
45099455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 151 - 371
Target Start/End: Complemental strand, 17348858 - 17348638
Alignment:
| Q |
151 |
tccctattcatctgttgagcagtcatgtaaacattttcaggtgcgatctctggagtagcacctcccttctggtaatcaggggtatgagtgcttactgcat |
250 |
Q |
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||||||||||||| ||||||||||| |||||| | || || ||||||||| || || || || ||||| ||||| || || |||||||| ||| || |
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| T |
17348858 |
tccctattcatctcctgagcagtcatataaacactatccggcgcgatctctctagccgcgccccctttctgataatctggtgtgtgagtgctcactacag |
17348759 |
T |
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| Q |
251 |
gtttagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagtgtatcattaaaaggagttatttccatacctcctacattaat |
350 |
Q |
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|||||||| ||||||||||||| | |||||| |||||||||||| ||||||||||| ||||||||||||||||||| || |||||| |||||||| |
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| T |
17348758 |
ccttagctgcatccttaaaaaccagaaaatccttatcaggaatccatgttctccaaagggtatcattaaaaggagttaatttttcacctccaacattaat |
17348659 |
T |
|
| Q |
351 |
cctatgaacagtttccaaaac |
371 |
Q |
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|||||||| |||||| ||||| |
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| T |
17348658 |
cctatgaatagtttctaaaac |
17348638 |
T |
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