View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_123 (Length: 282)
Name: NF6865A_low_123
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_123 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 90 - 282
Target Start/End: Original strand, 13879697 - 13879887
Alignment:
| Q |
90 |
cagctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaat |
189 |
Q |
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| T |
13879697 |
cagctcattggtgttgaaatagcgaatgagtcgtggagtggcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaat |
13879796 |
T |
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| Q |
190 |
gcaggcacggcggacatgaaagaggggtaagaggaagaaaggaggcgggaaaatgccattgtgttgacagttgacagagtgagattttcttgg |
282 |
Q |
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| T |
13879797 |
gcaggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttaacagttgac--agtgagattttcttgg |
13879887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 93 - 256
Target Start/End: Original strand, 13875477 - 13875640
Alignment:
| Q |
93 |
ctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgca |
192 |
Q |
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| T |
13875477 |
ctcattggtgttgaaatagcgaatgagtggaggtgcggtgtaggagatggctacgagtgacatggcggcagtagcgacggggtggcggcgaatgagtgaa |
13875576 |
T |
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| Q |
193 |
ggcacggcggacatgaaagaggggtaagaggaagaaaggaggcgggaaaatgccattgtgttga |
256 |
Q |
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| T |
13875577 |
ggcacggcggccatgaatgagcggtagcaggaagagaggaggcgggaaaatgccattgtgttga |
13875640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 13879630 - 13879675
Alignment:
| Q |
20 |
actcctcagtctccgtaaaatcccagagaacaagatcatcatcatc |
65 |
Q |
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| T |
13879630 |
actcctcagtctccgtaaaatcccagagaacaagatcatcatcatc |
13879675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 13885720 - 13885756
Alignment:
| Q |
220 |
gaggaagaaaggaggcgggaaaatgccattgtgttga |
256 |
Q |
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| T |
13885720 |
gaggaagagaggaagcgggaaaatgccattgtgttga |
13885756 |
T |
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