View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6865A_low_125 (Length: 280)
Name: NF6865A_low_125
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_125 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 56045568 - 56045301
Alignment:
| Q |
1 |
ttgtcgtgtcatacttgtgtccacttgacgtgaacaactgattagagaatataggaaacttcctagcatcaaaagtgttaaacctccagtaacatacggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56045568 |
ttgtcgtgtcatacttgtgtccacttgacgtgaacaactgattagagaatataggaaacttcctagcatcaaaagtgttaaacctccagtaacatacggg |
56045469 |
T |
|
| Q |
101 |
tagaattatatagatgaacatgataaatccaaccccaacattaacaatggaagtccacggtgcaacaagtgggcttccatgataagctgaaattccagcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56045468 |
tagaattatatagatgaacatgataaatccaaccccaacattaacaatggaagtccacggtgcaacaagtgggcttccatgataagctgaaattccagcc |
56045369 |
T |
|
| Q |
201 |
caatcaagtgtgaatgcaccaattccaagtccatggtaacctgatccaatttgttgtgctgtgatatt |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56045368 |
caatcaagtgtgaatgcaccaattccaagtccatggtaacctgatccaatttgttgtgctgtgatatt |
56045301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 55707012 - 55706814
Alignment:
| Q |
18 |
tgtccacttgacgtgaacaactgattagagaatataggaaacttcctagcatcaaaag-tgttaaacctccagtaacat-acgggtagaattatatagat |
115 |
Q |
| |
|
|||||||| || ||||||||||||||||| | |||||||||||||||||||||||||| |||||||| |||| |||||| | | ||||||||||||||| |
|
|
| T |
55707012 |
tgtccactggatgtgaacaactgattagaaagtataggaaacttcctagcatcaaaaggtgttaaacttccactaacattatagatagaattatatagat |
55706913 |
T |
|
| Q |
116 |
gaacatgataaatccaaccccaacattaacaatggaagtccacggtgcaacaagtgggcttccatgataagctgaaattccagcccaatcaagtgtgaa |
214 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |||||| |||||||| |||||| ||||||||||||||||||||||| | ||| || ||||||||||| |
|
|
| T |
55706912 |
gaacaagataaatccaacccaaacattaacagtggaagaccacggtgtaacaagagggcttccatgataagctgaaatccaagcgcagtcaagtgtgaa |
55706814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University