View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_127 (Length: 278)
Name: NF6865A_low_127
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_127 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 22199378 - 22199640
Alignment:
| Q |
1 |
tcagcagtagtggggagtacctttcctcggtgtacctttactctttttcaaaattaataaactccggggacgaataattccccttcacccagtcctgctc |
100 |
Q |
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| T |
22199378 |
tcagcagtagtggggagtacctttcctcggtgtacctttactctttatcaaaattaataaactccggggacgaataattccccttcacccagtcctgctc |
22199477 |
T |
|
| Q |
101 |
cagttcttatcaagagaactgtagcaccttatagatttgggatatttttacaattaagcttgagtgatattttcaatcacaagttacactagaagcattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22199478 |
cagttcttatcaagagaactgtagcaccttatagatttgggatatttttacaattaagcttgagtgatattttcaatcacaagttacactagaagcattc |
22199577 |
T |
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| Q |
201 |
attaatttcatccaccctatttgaatattatatggttgacatccctctctatctcccagtcat |
263 |
Q |
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| T |
22199578 |
attaatttcatccaccctatttgaatcttatatggttgacatctctctctatctcccagtcat |
22199640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 37471867 - 37471760
Alignment:
| Q |
10 |
gtggggagtacctttcctcggtgtacctttactctttttcaaaattaataaact--ccggggacgaataattccccttcacccagtcctgctccagttct |
107 |
Q |
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||||||| ||| ||||||||||||| |||||| ||||| ||||| |||| |||| ||| ||||||| |||||||||||||||| || ||||| ||| |
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| T |
37471867 |
gtggggactacttttcctcggtgtatctttaccctttt-caaaactaatgaactgaccg---acgaatagttccccttcacccagttatgttccagatct |
37471772 |
T |
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| Q |
108 |
tatcaagagaac |
119 |
Q |
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|||||||||||| |
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| T |
37471771 |
tatcaagagaac |
37471760 |
T |
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