View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_129 (Length: 274)

Name: NF6865A_low_129
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_129
NF6865A_low_129
[»] chr6 (2 HSPs)
chr6 (42-274)||(1414020-1414252)
chr6 (18-84)||(9149827-9149894)
[»] chr5 (5 HSPs)
chr5 (18-64)||(8871650-8871696)
chr5 (18-64)||(13854319-13854365)
chr5 (18-64)||(36606547-36606593)
chr5 (18-55)||(6666111-6666148)
chr5 (18-55)||(23130450-23130487)
[»] chr3 (6 HSPs)
chr3 (20-64)||(29360138-29360182)
chr3 (18-64)||(959253-959299)
chr3 (18-64)||(21869260-21869306)
chr3 (18-84)||(22976384-22976450)
chr3 (18-64)||(39580299-39580345)
chr3 (18-64)||(39674563-39674609)
[»] scaffold0017 (1 HSPs)
scaffold0017 (18-64)||(37676-37722)
[»] chr8 (4 HSPs)
chr8 (18-64)||(20289745-20289791)
chr8 (18-64)||(21076375-21076421)
chr8 (19-64)||(3046396-3046441)
chr8 (18-55)||(10861433-10861470)
[»] chr7 (2 HSPs)
chr7 (18-64)||(26279571-26279617)
chr7 (18-64)||(30947965-30948011)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 42 - 274
Target Start/End: Original strand, 1414020 - 1414252
Alignment:
Q  42 aacatcattagtaccgtaaaaaagattaccattgtctaatgtttgtgtcaatcccatctctctgtctttttatccaacacgtgtctcaaagctattgtta 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1414020 aacatcattagtaccgtaaaaaagattaccattgtctaatgtttgtgtcaatcccatctctctgtctttttatccaacacgtgtctcaaagctattgtta 1414119  T
Q  142 ggcannnnnnnctcacaagtgtttgatccaaaagcatggtgtcccaaagcattctagcatgatccgtaaatacagcatgaaacacattatgtcaaattta 241  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1414120 ggcatttttttctcacaagtgtttgatccaaaagcatggtgtcccaaagcattctagcatgatccgtaaatacagcatgaaacacattatgtcaaattta 1414219  T
Q  242 cgttttgctaaaattgtcgttgtttatatatta 274  Q
    |||||||  ||||||||| ||||||||||||||    
T  1414220 cgttttgacaaaattgtcattgtttatatatta 1414252  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 9149827 - 9149894
Alignment:
Q  18 acatcattagtaccatccaatgagaacatcattagtaccgt-aaaaaagattaccattgtctaatgtt 84  Q
    |||||||||||||||||||| || ||||||||||||||  | ||||| ||  ||||||||||||||||    
T  9149827 acatcattagtaccatccaaggataacatcattagtactatcaaaaacgaacaccattgtctaatgtt 9149894  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 8871696 - 8871650
Alignment:
Q  18 acatcattagtaccatccaatgagaacatcattagtaccgtaaaaaa 64  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  8871696 acatcattagtaccatccaaagagaacatcataagtactgtaaaaaa 8871650  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 13854319 - 13854365
Alignment:
Q  18 acatcattagtaccatccaatgagaacatcattagtaccgtaaaaaa 64  Q
    |||||||||||||||||||| ||||||||||| |||||  |||||||    
T  13854319 acatcattagtaccatccaaagagaacatcataagtactataaaaaa 13854365  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 36606593 - 36606547
Alignment:
Q  18 acatcattagtaccatccaatgagaacatcattagtaccgtaaaaaa 64  Q
    |||||||||||||||||||| ||||||||||| |||||  |||||||    
T  36606593 acatcattagtaccatccaaagagaacatcataagtactataaaaaa 36606547  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 6666148 - 6666111
Alignment:
Q  18 acatcattagtaccatccaatgagaacatcattagtac 55  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  6666148 acatcattagtaccatccaaagagaacatcataagtac 6666111  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 23130487 - 23130450
Alignment:
Q  18 acatcattagtaccatccaatgagaacatcattagtac 55  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  23130487 acatcattagtaccatccaaagagaacatcattggtac 23130450  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 29360182 - 29360138
Alignment:
Q  20 atcattagtaccatccaatgagaacatcattagtaccgtaaaaaa 64  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||    
T  29360182 atcattagtaccatccaaagagaacatcataagtactgtaaaaaa 29360138  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 959299 - 959253
Alignment:
Q  18 acatcattagtaccatccaatgagaacatcattagtaccgtaaaaaa 64  Q
    |||||||||||||||||||| ||||||||||| |||||  |||||||    
T  959299 acatcattagtaccatccaaagagaacatcataagtactataaaaaa 959253  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 21869306 - 21869260
Alignment:
Q  18 acatcattagtaccatccaatgagaacatcattagtaccgtaaaaaa 64  Q
    |||||||||||||||||||| ||||||||||| |||||  |||||||    
T  21869306 acatcattagtaccatccaaagagaacatcataagtactataaaaaa 21869260  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 22976384 - 22976450
Alignment:
Q  18 acatcattagtaccatccaatgagaacatcattagtaccgtaaaaaagattaccattgtctaatgtt 84  Q
    ||||||||||||| |||||| ||||||||||| |||||  ||||||| |  ||| ||||||||||||    
T  22976384 acatcattagtactatccaaagagaacatcataagtactataaaaaaaaacacctttgtctaatgtt 22976450  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 39580345 - 39580299
Alignment:
Q  18 acatcattagtaccatccaatgagaacatcattagtaccgtaaaaaa 64  Q
    |||||||||||||||||||| ||||||||||| |||||  |||||||    
T  39580345 acatcattagtaccatccaaagagaacatcataagtactataaaaaa 39580299  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 39674609 - 39674563
Alignment:
Q  18 acatcattagtaccatccaatgagaacatcattagtaccgtaaaaaa 64  Q
    |||||||||||||||||||| ||||||||||| |||||  |||||||    
T  39674609 acatcattagtaccatccaaagagaacatcataagtactataaaaaa 39674563  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 37676 - 37722
Alignment:
Q  18 acatcattagtaccatccaatgagaacatcattagtaccgtaaaaaa 64  Q
    |||||||||||||||||||| ||||||||||| |||||  |||||||    
T  37676 acatcattagtaccatccaaagagaacatcataagtactataaaaaa 37722  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 20289791 - 20289745
Alignment:
Q  18 acatcattagtaccatccaatgagaacatcattagtaccgtaaaaaa 64  Q
    |||||||||||||||||||| ||||||||||| |||||  |||||||    
T  20289791 acatcattagtaccatccaaagagaacatcataagtactataaaaaa 20289745  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 21076421 - 21076375
Alignment:
Q  18 acatcattagtaccatccaatgagaacatcattagtaccgtaaaaaa 64  Q
    |||||||||||||||||||| ||||||||||| |||||  |||||||    
T  21076421 acatcattagtaccatccaaagagaacatcataagtactataaaaaa 21076375  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 3046396 - 3046441
Alignment:
Q  19 catcattagtaccatccaatgagaacatcattagtaccgtaaaaaa 64  Q
    ||||||||||||||||||| ||||||||||| |||||  |||||||    
T  3046396 catcattagtaccatccaaagagaacatcataagtactataaaaaa 3046441  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 10861433 - 10861470
Alignment:
Q  18 acatcattagtaccatccaatgagaacatcattagtac 55  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  10861433 acatcattagtaccatccaaagagaacatcataagtac 10861470  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 26279571 - 26279617
Alignment:
Q  18 acatcattagtaccatccaatgagaacatcattagtaccgtaaaaaa 64  Q
    |||||||||||||||||||| ||||||||||| |||||  |||||||    
T  26279571 acatcattagtaccatccaaagagaacatcataagtactataaaaaa 26279617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 30948011 - 30947965
Alignment:
Q  18 acatcattagtaccatccaatgagaacatcattagtaccgtaaaaaa 64  Q
    |||||||||||||||||||| ||||||||||| |||||  |||||||    
T  30948011 acatcattagtaccatccaaagagaacatcataagtactataaaaaa 30947965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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