View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_13 (Length: 461)
Name: NF6865A_low_13
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 10 - 429
Target Start/End: Original strand, 47560443 - 47560862
Alignment:
| Q |
10 |
acatcaaccttttcataacagatccttttaaatcttctagatctcgccttcgtcttcccaaggcatccaaattaggcaacaggtcctttccatggcagag |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
47560443 |
acatcaaccttttcataacagatccttttaaatcttctagatctcgccttcgtcttcccaaggcatccaaattaggcaacaggtcctttccatagtagag |
47560542 |
T |
|
| Q |
110 |
gctatgatggcacatgacttgctggaaaattgttattctggtgctgaagtagcacatgccatcaagaggatgaaatagagaggaagccnnnnnnnctann |
209 |
Q |
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| T |
47560543 |
gctatgatggcacatgacttgctggaaaattgttattctggtgttaaagtagcacatgccatcaagaggatgaaatagagaggaagccaaaaaaactatt |
47560642 |
T |
|
| Q |
210 |
nnnnngtaaaattaaatgacccattttttaatagatgaagaacccatttttaatttacaaagatggtggtccttttacggataagcctaacacagtcaaa |
309 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47560643 |
tttttgtaaaattaaatgacccatttttcaatagatgaagaacccatttttaatttacaaagatggtggtccttttacggatatgcctaacacagtcaaa |
47560742 |
T |
|
| Q |
310 |
ttcaaaaagctcaaagagaactcagatttactagaagaaggatattgttggagtgctgatgtaaacaaataatctactagttgtcggaagaagatgtgtt |
409 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47560743 |
ttcaaaaagctcaaagagaactcagatttgctagaagaaggatattgttggagtgctgatataaacaaataatctactagttgtcggaagaagatgtgtt |
47560842 |
T |
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| Q |
410 |
tcagtgttgattttgaaaag |
429 |
Q |
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|||||||||||||||||||| |
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| T |
47560843 |
tcagtgttgattttgaaaag |
47560862 |
T |
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