View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6865A_low_130 (Length: 274)
Name: NF6865A_low_130
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_130 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 264
Target Start/End: Complemental strand, 9215677 - 9215419
Alignment:
| Q |
6 |
agatcagtatatctacacatccatgtttcactcccttttcggttgaataggacctctttagaacaaaataatgaataaagaataaatacatttttacaaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
9215677 |
agatcagtatatctacacatccatgtttcattccctttttggttgaataggacctctttagaacaaaataatgaataaagaataaataaatatttacaaa |
9215578 |
T |
|
| Q |
106 |
taannnnnnnaatgaataaaactaataacttttctcacaagaaacataagtttagtttcttttttgagaaaattcttgaaccacaatgcagaaagtttct |
205 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9215577 |
taaattttttaatgaataaaactaataacttttctcacaagaaacataagtttagtttcttttttgagaaaattcttgaaccacaatgcagaaagtttct |
9215478 |
T |
|
| Q |
206 |
cgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacagaataa |
264 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
9215477 |
cgtatcttttcaaaccattcttgtaatccacaaatgtcattccaaatctcacagaataa |
9215419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 116 - 254
Target Start/End: Original strand, 25158783 - 25158921
Alignment:
| Q |
116 |
aatgaataaaactaataacttttctcacaagaaacataagtttagtttcttttttgagaaaattcttgaaccacaatgcagaaagtttctcgtatctttt |
215 |
Q |
| |
|
||||||| || || ||||| ||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |||| ||||||||| |
|
|
| T |
25158783 |
aatgaatgaatctcataacctttctcattagaaacataagcttagtttcttttttgagaaaattcttaaaccacaatgcagacaacttctggtatctttt |
25158882 |
T |
|
| Q |
216 |
caaaccattcttgtaatctacaaaggtcattccaaatct |
254 |
Q |
| |
|
||| |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
25158883 |
caagccattcttataatcaacaaaggtcattccaaatct |
25158921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 264
Target Start/End: Complemental strand, 25254006 - 25253914
Alignment:
| Q |
172 |
agaaaattcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacagaataa |
264 |
Q |
| |
|
|||||||||||||||||||| | || || || | ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25254006 |
agaaaattcttgaaccacaaccctgagagcttttgatatcttttcaaaccatttttgtaatctacaaaggtcattccaaatctcacagtataa |
25253914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 264
Target Start/End: Original strand, 25179001 - 25179095
Alignment:
| Q |
170 |
tgagaaaattcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacagaataa |
264 |
Q |
| |
|
||||||||||||||||||||||| | ||||| || | |||||||||||||||| |||||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
25179001 |
tgagaaaattcttgaaccacaatcctgaaagcttttgatatcttttcaaaccatctttgtaatctataaaagtcattccaaatctcacagtataa |
25179095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 264
Target Start/End: Original strand, 25167300 - 25167393
Alignment:
| Q |
171 |
gagaaaattcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacagaataa |
264 |
Q |
| |
|
||||||||||| |||||||||| | || || || | ||||||||||||||||| ||||||||||| || ||||||||||||||||||| |||| |
|
|
| T |
25167300 |
gagaaaattctggaaccacaatcccgagagcttttgatatcttttcaaaccatttttgtaatctacgaatgtcattccaaatctcacagtataa |
25167393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 30363156 - 30363107
Alignment:
| Q |
208 |
tatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcac |
257 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
30363156 |
tatcttttcaagtcattgttgtaatctacaaagttcattccaaacctcac |
30363107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 42292664 - 42292576
Alignment:
| Q |
165 |
ttttttgagaaaattcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatc |
253 |
Q |
| |
|
|||||||||||||||| | ||||||| ||| || | || | || ||||||||||||||| |||||||| ||||| |||| ||||||| |
|
|
| T |
42292664 |
ttttttgagaaaattcgtaaaccacattgccgacaacttttggtgtcttttcaaaccatttttgtaatccacaaaattcatgccaaatc |
42292576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University