View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_141 (Length: 265)
Name: NF6865A_low_141
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_141 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0204 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 37071142 - 37071406
Alignment:
| Q |
1 |
tcacgttgggatgcttatttgaagatggagggttctcgagttcattggttctcaatcctaaattcactgatggttattattttccttgctggcattgttt |
100 |
Q |
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| T |
37071142 |
tcacgttgggatgcttatttgaagatggagggttctcgagttcattggttctcaatcctaaattcactgatggttattattttccttgctggcattgttt |
37071241 |
T |
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| Q |
101 |
ttgtcattttcttaagaactgtaagaagggatttgacaaggtatgaggaattggacaaagaggcacaagctcagatgaacgaggagctttctgggtggaa |
200 |
Q |
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| T |
37071242 |
ttgtcattttcttaagaactgtaagaagggatttgacaaggtatgaggaattggacaaagaggcacaagctcagatgaacgaggagctttctgggtggaa |
37071341 |
T |
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| Q |
201 |
acttgttgtaggtgatgtatttagggagcctgaatgctcaaagcttctgtgtgtaatggttggag |
265 |
Q |
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| T |
37071342 |
acttgttgtaggtgatgtatttagggagcctgaatgctcaaagcttctgtgtgtaatggttggag |
37071406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 265
Target Start/End: Complemental strand, 43219625 - 43219364
Alignment:
| Q |
4 |
cgttgggatgcttatttgaagatggagggttctcgagttcattggttctcaatcctaaattcactgatggttattattttccttgctggcattgtttttg |
103 |
Q |
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| T |
43219625 |
cgttgggatgcttatttgaagatggagggttcccgggtgcattggttctcgattctaaattcactgatggtgatcttttttctagctggtattgtttttg |
43219526 |
T |
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| Q |
104 |
tcattttcttaagaactgtaagaagggatttgacaaggtatgaggaattggacaaagaggcacaagctcagatgaacgaggagctttctgggtggaaact |
203 |
Q |
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| T |
43219525 |
tcattttcttaagaacagtgagaagggacttggcaaggtatgaggaattggacaaagagacacaagctcagatgaatgaggagctttctggatggaagct |
43219426 |
T |
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| Q |
204 |
tgttgtaggtgatgtatttagggagcctgaatgctcaaagcttctgtgtgtaatggttggag |
265 |
Q |
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| T |
43219425 |
tgttgtgggtgatgtatttagggaaccaggttgctcaaaactcctttgtgtgatggttggag |
43219364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 222 - 421
Alignment:
| Q |
7 |
tgggatgcttatttgaagatggagggttctcgagttcattggttctcaatcctaaattcactgatggttattattttccttgctggcattgtttttgtca |
106 |
Q |
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| T |
222 |
tgggatgcttacttgaagatggagggagccaaagtccattggttctcgatcctcaattcgttgatggtgatcactttccttgctggtattgttcttgtta |
321 |
T |
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| Q |
107 |
ttttcttaagaactgtaagaagggatttgacaaggtatgaggaattggacaaagaggcacaagctcagatgaacgaggagctttctgggtggaaacttgt |
206 |
Q |
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| T |
322 |
tcttcttgagaactgttaggagggatctggccagttacgaggagcttgataaggaagctcaagcacagatgaatgaggagttatctggttggaagcttgt |
421 |
T |
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