View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_15 (Length: 450)

Name: NF6865A_low_15
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_15
NF6865A_low_15
[»] chr5 (11 HSPs)
chr5 (123-311)||(18040956-18041144)
chr5 (190-311)||(37461984-37462105)
chr5 (133-305)||(3213010-3213182)
chr5 (123-304)||(33929105-33929281)
chr5 (123-305)||(9700118-9700299)
chr5 (123-311)||(43354629-43354818)
chr5 (264-310)||(28887297-28887343)
chr5 (265-305)||(28746228-28746268)
chr5 (264-305)||(24759105-24759146)
chr5 (264-305)||(28990842-28990883)
chr5 (264-305)||(32261624-32261665)
[»] chr6 (12 HSPs)
chr6 (123-311)||(3053721-3053910)
chr6 (190-311)||(12582296-12582417)
chr6 (190-310)||(33976117-33976238)
chr6 (190-311)||(247532-247653)
chr6 (123-228)||(28229694-28229798)
chr6 (224-311)||(28230954-28231041)
chr6 (133-250)||(3090646-3090762)
chr6 (133-228)||(18314102-18314196)
chr6 (264-305)||(6018482-6018523)
chr6 (243-305)||(559852-559914)
chr6 (264-305)||(28472347-28472388)
chr6 (264-305)||(29859536-29859577)
[»] chr3 (11 HSPs)
chr3 (123-311)||(32754265-32754452)
chr3 (176-305)||(52464788-52464916)
chr3 (133-304)||(8239022-8239192)
chr3 (123-310)||(28169945-28170131)
chr3 (123-305)||(54795807-54795988)
chr3 (190-311)||(44075223-44075344)
chr3 (190-310)||(916313-916433)
chr3 (123-310)||(22762065-22762252)
chr3 (173-305)||(42617569-42617699)
chr3 (272-305)||(33899952-33899985)
chr3 (272-305)||(35690123-35690156)
[»] chr1 (11 HSPs)
chr1 (123-311)||(28568524-28568711)
chr1 (123-305)||(49223273-49223454)
chr1 (123-305)||(5542131-5542312)
chr1 (123-305)||(16032861-16033042)
chr1 (173-305)||(17670109-17670240)
chr1 (133-305)||(36680051-36680222)
chr1 (185-311)||(18091397-18091522)
chr1 (171-311)||(12247588-12247722)
chr1 (212-311)||(41916339-41916438)
chr1 (241-305)||(38802431-38802495)
chr1 (264-305)||(45589741-45589782)
[»] chr8 (16 HSPs)
chr8 (133-311)||(45296565-45296742)
chr8 (123-297)||(41904875-41905049)
chr8 (133-305)||(19245560-19245731)
chr8 (133-305)||(19318744-19318915)
chr8 (185-310)||(39201637-39201761)
chr8 (190-311)||(30550793-30550914)
chr8 (190-311)||(44215542-44215663)
chr8 (123-311)||(12251248-12251435)
chr8 (123-311)||(39443773-39443960)
chr8 (190-311)||(20665430-20665551)
chr8 (161-311)||(22947537-22947681)
chr8 (123-241)||(29431426-29431544)
chr8 (272-305)||(14449525-14449558)
chr8 (248-305)||(17313433-17313490)
chr8 (264-305)||(39140707-39140748)
chr8 (241-305)||(11579316-11579380)
[»] chr7 (16 HSPs)
chr7 (123-311)||(4490805-4490993)
chr7 (173-305)||(42915478-42915609)
chr7 (123-305)||(42828649-42828833)
chr7 (190-311)||(20763027-20763148)
chr7 (190-311)||(29488593-29488714)
chr7 (190-311)||(33232464-33232585)
chr7 (190-311)||(34284606-34284727)
chr7 (185-305)||(47171762-47171882)
chr7 (190-305)||(19036169-19036284)
chr7 (190-305)||(20718352-20718467)
chr7 (123-311)||(38435617-38435804)
chr7 (123-311)||(42995459-42995646)
chr7 (264-305)||(32960704-32960745)
chr7 (272-305)||(44651794-44651827)
chr7 (241-305)||(10999237-10999301)
chr7 (242-305)||(38045781-38045845)
[»] scaffold0016 (1 HSPs)
scaffold0016 (123-305)||(99503-99683)
[»] scaffold0010 (2 HSPs)
scaffold0010 (133-311)||(50362-50539)
scaffold0010 (133-311)||(57895-58072)
[»] chr4 (19 HSPs)
chr4 (175-311)||(41986104-41986239)
chr4 (190-311)||(24079907-24080028)
chr4 (190-311)||(26926777-26926898)
chr4 (190-311)||(43330019-43330140)
chr4 (190-305)||(51450091-51450206)
chr4 (190-311)||(10261836-10261957)
chr4 (190-311)||(21562498-21562619)
chr4 (123-311)||(26871377-26871564)
chr4 (123-311)||(29345994-29346182)
chr4 (190-310)||(19588026-19588147)
chr4 (123-311)||(9097230-9097427)
chr4 (123-311)||(35831757-35831946)
chr4 (240-305)||(17976570-17976635)
chr4 (248-305)||(27288366-27288423)
chr4 (264-305)||(28116742-28116783)
chr4 (264-305)||(32139539-32139580)
chr4 (272-305)||(52620745-52620778)
chr4 (272-305)||(55208401-55208434)
chr4 (265-305)||(28361403-28361443)
[»] chr2 (7 HSPs)
chr2 (190-311)||(3708566-3708687)
chr2 (123-311)||(35287081-35287263)
chr2 (190-311)||(11868729-11868850)
chr2 (190-311)||(35360122-35360243)
chr2 (243-305)||(18166721-18166783)
chr2 (240-305)||(3079842-3079907)
chr2 (272-305)||(20313163-20313196)
[»] scaffold0095 (2 HSPs)
scaffold0095 (123-311)||(340-527)
scaffold0095 (265-311)||(1830-1876)
[»] scaffold0088 (1 HSPs)
scaffold0088 (123-311)||(55167-55354)
[»] scaffold0006 (2 HSPs)
scaffold0006 (123-255)||(156356-156487)
scaffold0006 (277-311)||(156492-156526)
[»] scaffold0038 (2 HSPs)
scaffold0038 (123-228)||(30192-30296)
scaffold0038 (224-311)||(31451-31538)
[»] scaffold1822 (1 HSPs)
scaffold1822 (264-305)||(368-409)
[»] scaffold1793 (1 HSPs)
scaffold1793 (264-305)||(175-216)
[»] scaffold0166 (1 HSPs)
scaffold0166 (264-305)||(1599-1640)
[»] scaffold0197 (1 HSPs)
scaffold0197 (241-305)||(25835-25899)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 123 - 311
Target Start/End: Original strand, 18040956 - 18041144
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| ||| |||||| |||| |||||  || | ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18040956 tgaacccctcaagccataaaaatcagtcaactctagtcatgcatagtctcagaaccatgaa-aaaaggaagaaaatgacctcatatgaagaagaaagtga 18041054  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacg-ttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    |||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18041055 aacagtgttctcagctgaacttaaataccgtttggccaacgtttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 18041144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 190 - 311
Target Start/End: Complemental strand, 37462105 - 37461984
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||    
T  37462105 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacagtctaaaagttacttca 37462006  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  37462005 aaacaaagtaaaaataaaggcc 37461984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 133 - 305
Target Start/End: Original strand, 3213010 - 3213182
Alignment:
Q  133 aagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaag-gaagaaaatgacctcatatgaagaagaaagtgaaacagtatt 231  Q
    ||||||||||| ||| ||||||  ||| ||||| ||| | | ||||||||| ||||  ||||||||||||||| |||||||||||||||| | ||   ||    
T  3213010 aagccataaaaatcagtcaactcaagtcatgcatggtctcaaaaccatgaaaaaaaaagaagaaaatgacctcttatgaagaagaaagtgta-caaagtt 3213108  T
Q  232 ctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    | || |||||||||||||||||||  |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  3213109 cccaactgaacttagataccgtttgaccaaggttttttacggtctaaaagttacttcaaaacaaagttaaaata 3213182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 123 - 304
Target Start/End: Complemental strand, 33929281 - 33929105
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| ||| ||||||  ||| ||||| ||| ||||||||||||| ||||  |||||||||||||| |||||||||||||||||    
T  33929281 tgaacccctcaagccataaaaatcagtcaactcaagtcatgcatggtctaagaaccatgaaaaaaataaagaaaatgacctcttatgaagaagaaagtga 33929182  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaat 304  Q
    |||| | ||| |||||||||||||||||       | || |||||||| | |||||||||||||| ||| ||||||||||||    
T  33929181 aacattgttcccagctgaacttagatac-----gacaaatgttttttacgatctaaaagttactttaaagcaaagttaaaat 33929105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 123 - 305
Target Start/End: Complemental strand, 9700299 - 9700118
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| ||| ||||||  ||| ||||| ||| | ||||||||||| |||||||||||||||||||| || ||||||||||| |     
T  9700299 tgaacccctcaagccataaaaatcagtcaactcaagtcatgcatggtctcagaaccatgaa-aaaaggaagaaaatgacctcttaagaagaagaaagcgt 9700201  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||| ||| || | |||||  | ||||||||  |||| | |||||| |||||||| |||| ||||||||||||||||||||    
T  9700200 aacagttttcccatccgaactctgctaccgtttgaccaatggtttttacggtctaaatgttatttcaaaacaaagttaaaata 9700118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 123 - 311
Target Start/End: Complemental strand, 43354818 - 43354629
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaagg-aagaaaatgacctcatatgaagaagaaagtg 221  Q
    ||||||| | ||||||||||| ||| ||||||  ||| ||||| ||| | ||||| ||||| ||||   ||||||||||| || ||||| ||||||| ||    
T  43354818 tgaacccctcaagccataaaaatcagtcaactcaagtcatgcatggtctcagaacaatgaaaaaaaaataagaaaatgacatcttatgaggaagaaaatg 43354719  T
Q  222 aaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    ||||||| ||| || |||||||||| ||| | || |||||| ||||| | ||||||||||||||||||||| ||| | |||||| |||||    
T  43354718 aaacagtgttcccaactgaacttaggtacagcttggccaacctttttaacggtctaaaagttacttcaaaataaaataaaaataaaggcc 43354629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 28887343 - 28887297
Alignment:
Q  264 ttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggc 310  Q
    ||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  28887343 ttttttacggtctaaaagttactttaaaacaaagttaaaataaaggc 28887297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 28746228 - 28746268
Alignment:
Q  265 tttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  28746228 tttttttggtctaaaagttactttaaaacaaagttaaaata 28746268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 24759146 - 24759105
Alignment:
Q  264 ttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||| ||||||||||| ||||| |||||||||||||||||    
T  24759146 ttttttttggtctaaaagctactttaaaacaaagttaaaata 24759105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 28990842 - 28990883
Alignment:
Q  264 ttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    ||||||| ||| |||||||||||| |||||||||||||||||    
T  28990842 ttttttacggtttaaaagttactttaaaacaaagttaaaata 28990883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 32261624 - 32261665
Alignment:
Q  264 ttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||| ||||||||||| ||||| |||||||||||||||||    
T  32261624 ttttttttggtctaaaagctactttaaaacaaagttaaaata 32261665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 123 - 311
Target Start/End: Original strand, 3053721 - 3053910
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaa-ggaagaaaatgacctcatatgaagaagaaagtg 221  Q
    ||||||| | ||| ||||||| ||| |||||| |||| ||||| ||| | ||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  3053721 tgaacccctcaagtcataaaaatcagtcaactctagtcatgcatggtctcagaaccatgaaaaaaaaggaagaaaatgacctcatatgaagaagaaagtg 3053820  T
Q  222 aaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    ||| ||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  3053821 aaatagtgttctcagctgaacttagataccatttggccaaggttttttatggtctaaaagatacttcataacaaagttaaaatacaggcc 3053910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 190 - 311
Target Start/End: Original strand, 12582296 - 12582417
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||    
T  12582296 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacagtctaaaagttacttca 12582395  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  12582396 aaacaaagtaaaaataaaggcc 12582417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 190 - 310
Target Start/End: Complemental strand, 33976238 - 33976117
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttag-ccaacgttttttatggtctaaaagttacttc 288  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||| ||||||| | | || |||||||| |||||||||||||||||    
T  33976238 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagacaccgtttggtcaaaggttttttacggtctaaaagttacttc 33976139  T
Q  289 aaaacaaagttaaaatacaggc 310  Q
    ||||||||||||||||| ||||    
T  33976138 aaaacaaagttaaaataaaggc 33976117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 190 - 311
Target Start/End: Complemental strand, 247653 - 247532
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||   | ||||||||||||||    
T  247653 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacattataaaagttacttca 247554  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  247553 aaacaaagtaaaaataaaggcc 247532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 28229694 - 28229798
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| ||| |||| |  ||| ||||| ||| | ||||||||||| |||||||||||||||| ||| |||||||||||||||||    
T  28229694 tgaacccctcaagccataaaaatcagtcaattcaagtcatgcatggtctcagaaccatgaa-aaaaggaagaaaatgatctcttatgaagaagaaagtga 28229792  T
Q  223 aacagt 228  Q
    ||||||    
T  28229793 aacagt 28229798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 28230954 - 28231041
Alignment:
Q  224 acagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    ||||| ||| || |||||||||||||| |||| || || ||||||||  |||||||| |||||||||||||||||||||||| |||||    
T  28230954 acagtgttcccaactgaacttagatactgtttggcaaaggttttttactgtctaaaaattacttcaaaacaaagttaaaataaaggcc 28231041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 250
Target Start/End: Original strand, 3090646 - 3090762
Alignment:
Q  133 aagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattc 232  Q
    ||||||||||| ||| ||||||  ||| ||||| ||| | | ||| ||||| ||||  |||||| || |||| ||||||||||||||||||||||| |||    
T  3090646 aagccataaaaatcagtcaactcaagtcatgcatggtctcataactatgaaaaaaac-aagaaagtggcctcttatgaagaagaaagtgaaacagtgttc 3090744  T
Q  233 tcagctgaacttagatac 250  Q
     |||||||||||||||||    
T  3090745 ccagctgaacttagatac 3090762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 18314196 - 18314102
Alignment:
Q  133 aagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagt 228  Q
    ||||||||||| ||| ||||||  ||| || || ||| | ||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||    
T  18314196 aagccataaaaatcagtcaactcaagtcatacatggtcttagaaccatgaa-aaaaggaagtaaataacctcttatgaagaagaaagtgaaacagt 18314102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 6018482 - 6018523
Alignment:
Q  264 ttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  6018482 ttttttttggtctaaaagttactttaaaacaaagttaaaata 6018523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 559914 - 559852
Alignment:
Q  243 ttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||| |||||||| ||||   ||||||  |||||||||||||||| |||||||||||||||||    
T  559914 ttaggtaccgtttggccaggctttttttcggtctaaaagttactttaaaacaaagttaaaata 559852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 28472388 - 28472347
Alignment:
Q  264 ttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||| ||||||||||| ||||| |||||||||||||||||    
T  28472388 ttttttttggtctaaaagctactttaaaacaaagttaaaata 28472347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 29859577 - 29859536
Alignment:
Q  264 ttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||| ||||||||||| ||||| |||||||||||||||||    
T  29859577 ttttttttggtctaaaagctactttaaaacaaagttaaaata 29859536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 123 - 311
Target Start/End: Complemental strand, 32754452 - 32754265
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| | | ||||||  ||| ||||| ||| | | ||||||||| |||||||||||||||||||| |||||||||||||||||    
T  32754452 tgaacccctcaagccataaaaattagtcaactcaagtcatgcatggtctcataaccatgaa-aaaaggaagaaaatgacctcttatgaagaagaaagtga 32754354  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    |||||| ||| |||||||||||| ||||||||| || || |||||||| |||||||||||||||||||||||||||||||||| |||||    
T  32754353 aacagtgttcccagctgaacttaaataccgtttggcaaaggttttttacggtctaaaagttacttcaaaacaaagttaaaataaaggcc 32754265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 176 - 305
Target Start/End: Original strand, 52464788 - 52464916
Alignment:
Q  176 accatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtc 275  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||  |||| | |||||| ||||    
T  52464788 accatgaa-aaaaggaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccagctgaacttagataccgtttgaccaaggatttttacggtc 52464886  T
Q  276 taaaagttacttcaaaacaaagttaaaata 305  Q
    |||||||||||| |||||||||||||||||    
T  52464887 taaaagttacttgaaaacaaagttaaaata 52464916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 133 - 304
Target Start/End: Complemental strand, 8239192 - 8239022
Alignment:
Q  133 aagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattc 232  Q
    ||||||||||| ||| ||||||  ||| ||||| ||| | | ||||||||| |||  ||||||||||||||| ||||||||||||||||||||||| |||    
T  8239192 aagccataaaaatcagtcaactcaagtcatgcatggtctcataaccatgaa-aaagtgaagaaaatgacctcttatgaagaagaaagtgaaacagtgttc 8239094  T
Q  233 tcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaat 304  Q
    |||||| ||||||||||||||||  |||| |||||||| |||| |||| |||||||||||||||||||||||    
T  8239093 tcagctaaacttagataccgtttgaccaaggttttttaaggtcaaaaaattacttcaaaacaaagttaaaat 8239022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 123 - 310
Target Start/End: Original strand, 28169945 - 28170131
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| ||| ||||||| ||| ||||| ||| | ||||||||||| |||||||||||||||||||| || ||||||||||| ||    
T  28169945 tgaacccctcaagccataaaaatcagtcaactaaagtcatgcatggtctcagaaccatgaa-aaaaggaagaaaatgacctcttacgaagaagaaagaga 28170043  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggc 310  Q
    |||||| ||| ||| |||||||||||||||||  | |||  ||||||| ||||||||||||||||||||| ||| |||||||| ||||    
T  28170044 aacagtgttcacagttgaacttagataccgttagggcaagattttttacggtctaaaagttacttcaaaataaatttaaaataaaggc 28170131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 123 - 305
Target Start/End: Original strand, 54795807 - 54795988
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| | | ||||||  ||| ||||| ||| | ||||||||  | |||||||||||||||||||| ||||||||||||| ||     
T  54795807 tgaacccctcaagccataaaaattagtcaactcaagtcatgcatggtctcagaaccatata-aaaaggaagaaaatgacctcttatgaagaagaaaatgt 54795905  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||  ||| ||||  |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  54795906 aacagagttcccagccaaacttagataccgtttggccaaggttttttatggtctaaaagttacttcaaaacaaagttaaaata 54795988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 190 - 311
Target Start/End: Original strand, 44075223 - 44075344
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||    
T  44075223 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacagtctaaaagttacttca 44075322  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  44075323 aaacaaagtaaaaataaaggcc 44075344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 190 - 310
Target Start/End: Complemental strand, 916433 - 916313
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||    
T  916433 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacagtctaaaagttacttca 916334  T
Q  290 aaacaaagttaaaatacaggc 310  Q
    ||||||||| |||||| ||||    
T  916333 aaacaaagtaaaaataaaggc 916313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 123 - 310
Target Start/End: Original strand, 22762065 - 22762252
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| | | ||||||  ||| ||||| ||| | ||||||||||| ||||| || ||||||||||| |||||||||||||||||    
T  22762065 tgaacccttcaagccataaaaattagtcaactcaagtcatgcatggtctcagaaccatgaa-aaaagaaaaaaaatgacctcttatgaagaagaaagtga 22762163  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttt-tttatggtctaaaagttacttcaaaacaaagttaaaatacaggc 310  Q
    |||||| ||  || ||||||||||||||||||| ||||| |||| |||| |   | ||| |||||||||||||||||||||||| ||||    
T  22762164 aacagtgtttccaactgaacttagataccgtttggccaaggtttgtttacgacttgaaacttacttcaaaacaaagttaaaataaaggc 22762252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 173 - 305
Target Start/End: Original strand, 42617569 - 42617699
Alignment:
Q  173 agaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatg 272  Q
    ||||||||||| |||||||||||||| ||||| |||||||||||||||||||  || ||| || |||||||||| |||||||| |||||  ||||||| |    
T  42617569 agaaccatgaa-aaaaggaagaaaataacctcttatgaagaagaaagtgaaattgtgttcccaactgaacttaggtaccgtttggccaagcttttttacg 42617667  T
Q  273 gtctaaaagttacttcaaaacaaagttaaaata 305  Q
     ||| |||| |||||||||||||||||||||||    
T  42617668 ctct-aaagctacttcaaaacaaagttaaaata 42617699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 305
Target Start/End: Complemental strand, 33899985 - 33899952
Alignment:
Q  272 ggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||||||||||||| |||||||||||||||||    
T  33899985 ggtctaaaagttactttaaaacaaagttaaaata 33899952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 305
Target Start/End: Original strand, 35690123 - 35690156
Alignment:
Q  272 ggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||||||||||||| |||||||||||||||||    
T  35690123 ggtctaaaagttactttaaaacaaagttaaaata 35690156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 123 - 311
Target Start/End: Original strand, 28568524 - 28568711
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| ||| ||||||  ||| ||||| ||| | ||||||||| | |||||||||||||||||||| ||||||||||||||||     
T  28568524 tgaacccctcaagccataaaaatcagtcaactcaagtcatgcatggtctcagaaccatgta-aaaaggaagaaaatgacctcttatgaagaagaaagtgt 28568622  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    |||||  ||  |||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |||||    
T  28568623 aacagagtttccagctgaacttagataccgtttggccaatgttttttacggtctaaaagttacttcaaaacaaagttaaaataaaggcc 28568711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 123 - 305
Target Start/End: Complemental strand, 49223454 - 49223273
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||||| ||||||||||| ||| ||||||  ||| | ||| | | | ||||||||||| |||||||||||||||||  | |||||||||||||||||    
T  49223454 tgaacccatcaagccataaaaatcagtcaactcaagtcacgcatgatctcagaaccatgaa-aaaaggaagaaaatgacagcttatgaagaagaaagtga 49223356  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||| ||| |||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  49223355 aacagtgttcccagctgaacttagataccgtttggccaaggtttcttacggtctaaaagttacttcaaaacaaagttaaaata 49223273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 123 - 305
Target Start/End: Complemental strand, 5542312 - 5542131
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||||| |||||| |||| ||| ||||||  ||| ||||| ||| | ||||||||||| ||||||||||||||||| || |||||||||||||||||    
T  5542312 tgaacccatcaagccaaaaaaatcagtcaactcaagtcatgcatggtctcagaaccatgaa-aaaaggaagaaaatgacatcttatgaagaagaaagtga 5542214  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||| | ||| ||  |||||||||||||||||| ||||| ||||||||  |||||||||||||||||||||||||||||||||    
T  5542213 aacattgttcccatatgaacttagataccgtttggccaaggttttttaccgtctaaaagttacttcaaaacaaagttaaaata 5542131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 123 - 305
Target Start/End: Original strand, 16032861 - 16033042
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| ||| ||||||  | | ||||| ||| | ||||||||| | ||||||||||||||||| |  |||||||||||||||||    
T  16032861 tgaacccctcaagccataaaaatcagtcaactcaaatcatgcatggtctcagaaccatgca-aaaaggaagaaaatgacattttatgaagaagaaagtga 16032959  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||| | ||| ||||||||||||||||||||||  | || |||||||| ||||||||||||||||||||||||||||||||||    
T  16032960 aacaatgttcccagctgaacttagataccgtttgacaaaggttttttacggtctaaaagttacttcaaaacaaagttaaaata 16033042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 173 - 305
Target Start/End: Complemental strand, 17670240 - 17670109
Alignment:
Q  173 agaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatg 272  Q
    ||||||||||| |||||||||||||||||||| ||||||||| |||||||||| || |||| |||||||| ||||||||||||  | ||  ||||||| |    
T  17670240 agaaccatgaa-aaaaggaagaaaatgacctcttatgaagaaaaaagtgaaacggtgttctgagctgaacgtagataccgtttgacaaagattttttacg 17670142  T
Q  273 gtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||||||||||||||||||||||||||||||    
T  17670141 gtctaaaagttacttcaaaacaaagttaaaata 17670109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 133 - 305
Target Start/End: Complemental strand, 36680222 - 36680051
Alignment:
Q  133 aagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattc 232  Q
    ||||||||||| ||| ||||||  ||| ||| | ||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||     
T  36680222 aagccataaaaatcagtcaactcaagtcatgtatggtctcagaaccatgaa-aaaaggaagaaaatgacctcttatgaagaagaaagtgaaacaatgttt 36680124  T
Q  233 tcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
     ||||||||||||||||| ||||  | ||  ||||||| ||||||||||||| ||||||||||||||||||||    
T  36680123 ccagctgaacttagatactgtttgacaaagattttttacggtctaaaagttaattcaaaacaaagttaaaata 36680051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 185 - 311
Target Start/End: Complemental strand, 18091522 - 18091397
Alignment:
Q  185 aaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagtta 284  Q
    ||||||||||||||| ||||  ||||||| |||||||||||||||||| ||||||||||||| ||||||||  ||||  |||||||||||||||||| ||    
T  18091522 aaaaggaagaaaatg-cctctgatgaagaggaaagtgaaacagtattcccagctgaacttaggtaccgtttgaccaagcttttttatggtctaaaagcta 18091424  T
Q  285 cttcaaaacaaagttaaaatacaggcc 311  Q
     |||||||||||||||||||| |||||    
T  18091423 gttcaaaacaaagttaaaataaaggcc 18091397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 171 - 311
Target Start/End: Original strand, 12247588 - 12247722
Alignment:
Q  171 taagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgtttttta 270  Q
    ||||||||||||| ||||  |||||||||||||| ||||||||||||||||||||| | ||| |||||||||||||||||      || || ||||||||    
T  12247588 taagaaccatgaa-aaaataaagaaaatgacctcttatgaagaagaaagtgaaacactgttcccagctgaacttagatac-----ggcaaatgtttttta 12247681  T
Q  271 tggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
     | |||||||||||||| ||||||||||||||||| |||||    
T  12247682 cgatctaaaagttactttaaaacaaagttaaaataaaggcc 12247722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 41916339 - 41916438
Alignment:
Q  212 gaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    ||||||||||||||||||||| || |||||||||| ||| || | |||||  |||||   ||||||||||||||||||||| ||| | |||||| |||||    
T  41916339 gaagaaagtgaaacagtattcccaactgaacttaggtacagtctggccaaactttttagcggtctaaaagttacttcaaaataaaatcaaaataaaggcc 41916438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 38802495 - 38802431
Alignment:
Q  241 acttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||| |||||||| ||||   |||||| ||||||||||| ||||| |||||||||||||||||    
T  38802495 acttaggtaccgtttggccagacttttttttggtctaaaagctactttaaaacaaagttaaaata 38802431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 45589782 - 45589741
Alignment:
Q  264 ttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||| | ||||||||||||||| |||||||||||||||||    
T  45589782 tttttttttgtctaaaagttactttaaaacaaagttaaaata 45589741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 133 - 311
Target Start/End: Original strand, 45296565 - 45296742
Alignment:
Q  133 aagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattc 232  Q
    ||||||||||| ||| ||||||  ||| ||| | ||| | | ||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||    
T  45296565 aagccataaaaatcagtcaactcaagtcatgtatggtttcaaaaccatgaa-aaaaggaagaaaatgacctcttatgaagaagaaagtgaaaccgtgttc 45296663  T
Q  233 tcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
     |||||||||||||||||||||| | ||| |||||||| |||||||||||||||||||||||||||||||||| |||||    
T  45296664 ccagctgaacttagataccgtttggtcaaggttttttacggtctaaaagttacttcaaaacaaagttaaaataaaggcc 45296742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 123 - 297
Target Start/End: Complemental strand, 41905049 - 41904875
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | |||||||||||  || ||||||  ||| ||||| ||| | |||||||| || |||||||||||| ||||||| |||||||||||||||||    
T  41905049 tgaacccctcaagccataaaaaccagtcaactcaagtcatgcatggtctcagaaccataaaaaaaaggaagaaattgacctcttatgaagaagaaagtga 41904950  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaag 297  Q
    |||||| ||| |||||||||||||||||||||| ||||| |||||||| ||| ||||||||||| ||||||||||    
T  41904949 aacagtgttcccagctgaacttagataccgtttggccaaggttttttacggtttaaaagttactacaaaacaaag 41904875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 133 - 305
Target Start/End: Complemental strand, 19245731 - 19245560
Alignment:
Q  133 aagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattc 232  Q
    ||||||||||| ||| ||||||  ||| ||| | ||| | ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| | |||    
T  19245731 aagccataaaaatcagtcaactcaagtcatgtatggtctcagaaccatgaa-aaaacgaagaaaatgacctcttatgaagaagaaagtgaaacaatgttc 19245633  T
Q  233 tcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
     |||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||||  |||||||||||    
T  19245632 ccagctgaacttagataccgtttggccaaggttttttacgttctaaaagttacttcaaaatgaagttaaaata 19245560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 133 - 305
Target Start/End: Complemental strand, 19318915 - 19318744
Alignment:
Q  133 aagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattc 232  Q
    ||||||||||| ||| ||||||  ||| ||| | ||| | ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| | |||    
T  19318915 aagccataaaaatcagtcaactcaagtcatgtatggtctcagaaccatgaa-aaaacgaagaaaatgacctcttatgaagaagaaagtgaaacaatgttc 19318817  T
Q  233 tcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
     |||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||||  |||||||||||    
T  19318816 ccagctgaacttagataccgtttggccaaggttttttacgttctaaaagttacttcaaaatgaagttaaaata 19318744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 185 - 310
Target Start/End: Complemental strand, 39201761 - 39201637
Alignment:
Q  185 aaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagtta 284  Q
    |||| ||||||||||||||| |||||||||||||||| | ||   ||| |||||||||||||||||||||  ||||| ||||||||||||||||||||||    
T  39201761 aaaaagaagaaaatgacctcttatgaagaagaaagtgta-caaagttcccagctgaacttagataccgttaggccaaggttttttatggtctaaaagtta 39201663  T
Q  285 cttcaaaacaaagttaaaatacaggc 310  Q
    ||||||||||||||||||||| ||||    
T  39201662 cttcaaaacaaagttaaaataaaggc 39201637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 190 - 311
Target Start/End: Original strand, 30550793 - 30550914
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | | | ||||||||  |||||||||||||||||    
T  30550793 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcgaggttttttacagtctaaaagttacttca 30550892  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  30550893 aaacaaagtaaaaataaaggcc 30550914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 190 - 311
Target Start/End: Original strand, 44215542 - 44215663
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||    
T  44215542 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacagtctaaaagttacttca 44215641  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    |||||| || |||||| |||||    
T  44215642 aaacaatgtaaaaataaaggcc 44215663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 123 - 311
Target Start/End: Original strand, 12251248 - 12251435
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| ||| ||||||  ||| ||||| ||| | ||||||||||| |||||||||||||||||||| || |||||||||||||     
T  12251248 tgaacccctcaagccataaaaatcagtcaactcaagtcatgcatggtctcagaaccatgaa-aaaaggaagaaaatgacctcttaagaagaagaaagtgt 12251346  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    |||||| ||| || | |||||  |||| |||||  |||| | |||||| |||||||| |||| |||||||||||||||||||| |||||    
T  12251347 aacagttttcccatccgaactctgatatcgtttgaccaatggtttttacggtctaaatgttatttcaaaacaaagttaaaataaaggcc 12251435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 123 - 311
Target Start/End: Complemental strand, 39443960 - 39443773
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| ||| ||||||  ||| ||||| ||| | ||||||||||| |||||||||||||||||||| || |||||||||||||     
T  39443960 tgaacccctcaagccataaaaatcagtcaactcaagtcatgcatggtctcagaaccatgaa-aaaaggaagaaaatgacctcttaagaagaagaaagtgt 39443862  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    |||||| ||| || | |||||  |||| |||||  |||| | |||||| |||||||| |||| |||||||||||||||||||| |||||    
T  39443861 aacagttttcccatccgaactctgatatcgtttgaccaatggtttttacggtctaaatgttatttcaaaacaaagttaaaataaaggcc 39443773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 190 - 311
Target Start/End: Original strand, 20665430 - 20665551
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||   | ||||||||||||||    
T  20665430 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacattataaaagttacttca 20665529  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  20665530 aaacaaagtaaaaataaaggcc 20665551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 161 - 311
Target Start/End: Original strand, 22947537 - 22947681
Alignment:
Q  161 atgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagcca 260  Q
    ||||| ||| ||||||||||||| ||||  |||||||||||||| ||||||||||||||||||||| | ||| |||||||||||||||||      || |    
T  22947537 atgcatggtctaagaaccatgaa-aaaataaagaaaatgacctcttatgaagaagaaagtgaaacactgttcccagctgaacttagatac-----ggcaa 22947630  T
Q  261 acgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    | |||||||| | |||||||||||||| ||||||||||||||||| |||||    
T  22947631 atgttttttacgatctaaaagttactttaaaacaaagttaaaataaaggcc 22947681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 123 - 241
Target Start/End: Complemental strand, 29431544 - 29431426
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| ||| ||||||  ||| ||||| ||| | ||||||||||| ||||| |||||||||||||| |||||||||||||| ||    
T  29431544 tgaacccctcaagccataaaaatcaatcaactcaagtcatgcatggtctcagaaccatgaaaaaaagaaagaaaatgacctcttatgaagaagaaaggga 29431445  T
Q  223 aacagtattctcagctgaa 241  Q
    |||||| ||  ||||||||    
T  29431444 aacagtgtttccagctgaa 29431426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 305
Target Start/End: Original strand, 14449525 - 14449558
Alignment:
Q  272 ggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||||||||||||| |||||||||||||||||    
T  14449525 ggtctaaaagttactttaaaacaaagttaaaata 14449558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 17313433 - 17313490
Alignment:
Q  248 taccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||||| |||||  ||||||  |||||||||| ||||| |||||||||||||||||    
T  17313433 taccgtttggccaagctttttttcggtctaaaagctactttaaaacaaagttaaaata 17313490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 39140707 - 39140748
Alignment:
Q  264 ttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||||  ||||||||||||||| |||||||||||||||||    
T  39140707 ttttttacagtctaaaagttactttaaaacaaagttaaaata 39140748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 11579380 - 11579316
Alignment:
Q  241 acttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||| |||||||| ||||   ||||||  |||||||||| ||||| |||||||||||||||||    
T  11579380 acttaggtaccgtttggccagattttttttcggtctaaaagctactttaaaacaaagttaaaata 11579316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 123 - 311
Target Start/End: Original strand, 4490805 - 4490993
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||| ||| ||| ||||||  ||| ||||| ||| | ||||||||||| |||||||||||||||||||| | |||||||||||||||    
T  4490805 tgaacccctcaagccattaaaatcagtcaactcaagtcatgcatggtctcagaaccatgaaaaaaaggaagaaaatgacctcttttgaagaagaaagtga 4490904  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    || ||| ||| || ||||||||||||| ||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  4490905 aatagtgttcccaactgaacttagatagcgtttggccaaggttttttacggtctaaaaattacttcaaaacaaagttaaaataaaggcc 4490993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 173 - 305
Target Start/End: Complemental strand, 42915609 - 42915478
Alignment:
Q  173 agaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatg 272  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||| |||||||| |    
T  42915609 agaaccatgaa-aaaaggaagaaaatgaccttttatgaagaagaaagtgaaacagtgttcccagctgaacttagataccgtttggtcaaggttttttacg 42915511  T
Q  273 gtctaaaagttacttcaaaacaaagttaaaata 305  Q
    | | |||||||||||||||||||||||||||||    
T  42915510 gccaaaaagttacttcaaaacaaagttaaaata 42915478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 123 - 305
Target Start/End: Original strand, 42828649 - 42828833
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaa--ggaagaaaatgacctcatatgaagaagaaagt 220  Q
    ||||||| | ||||||||||| ||| ||||||  ||| || || ||| | | ||||||||| ||||  ||||||| |||||||| |||||||||||||||    
T  42828649 tgaacccctcaagccataaaaatcagtcaactcaagtcatacatggtctcaaaaccatgaaaaaaaaaggaagaatatgacctcttatgaagaagaaagt 42828748  T
Q  221 gaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||||| |||  |||| |||||||||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||    
T  42828749 gaaacagtgttcctagctaaacttagataccgtttggcaaatgttttttacggtctaaaagttacttcaaaacaaagttaaaata 42828833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 190 - 311
Target Start/End: Complemental strand, 20763148 - 20763027
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||    
T  20763148 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacagtctaaaagttacttca 20763049  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  20763048 aaacaaagtaaaaataaaggcc 20763027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 190 - 311
Target Start/End: Complemental strand, 29488714 - 29488593
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    |||||||||||| || ||||||||||||||||||||||| |||||  ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||    
T  29488714 gaagaaaatgacatcttatgaagaagaaagtgaaacagtgttctcgactgaacttagataccgtttggtcaaggttttttacagtctaaaagttacttca 29488615  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  29488614 aaacaaagtaaaaataaaggcc 29488593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 190 - 311
Target Start/End: Original strand, 33232464 - 33232585
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||    
T  33232464 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacagtctaaaagttacttca 33232563  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  33232564 aaacaaagtaaaaataaaggcc 33232585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 190 - 311
Target Start/End: Original strand, 34284606 - 34284727
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||    
T  34284606 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacagtctaaaagttacttca 34284705  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  34284706 aaacaaagtaaaaataaaggcc 34284727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 185 - 305
Target Start/End: Complemental strand, 47171882 - 47171762
Alignment:
Q  185 aaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagtta 284  Q
    |||||||||||||| || || ||||||||||||| ||||||| | ||| ||| ||||||||||||| |||| ||||| |||||||| |||||||||||||    
T  47171882 aaaaggaagaaaataacatcttatgaagaagaaaatgaaacaatgttcccagttgaacttagatacagtttggccaaggttttttacggtctaaaagtta 47171783  T
Q  285 cttcaaaacaaagttaaaata 305  Q
    |||||||||||||||||||||    
T  47171782 cttcaaaacaaagttaaaata 47171762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 190 - 305
Target Start/End: Original strand, 19036169 - 19036284
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||    
T  19036169 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacagtctaaaagttacttca 19036268  T
Q  290 aaacaaagttaaaata 305  Q
    ||||||||| ||||||    
T  19036269 aaacaaagtaaaaata 19036284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 190 - 305
Target Start/End: Complemental strand, 20718467 - 20718352
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||    
T  20718467 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacagtctaaaagttacttca 20718368  T
Q  290 aaacaaagttaaaata 305  Q
    ||||||||| ||||||    
T  20718367 aaacaaagtaaaaata 20718352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 123 - 311
Target Start/End: Original strand, 38435617 - 38435804
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| ||| ||||||  ||| ||||| ||| | ||||||||||| |||||||||||||||||||| || |||||||||||||     
T  38435617 tgaacccctcaagccataaaaatcagtcaactcaagtcatgcatggtctcagaaccatgaa-aaaaggaagaaaatgacctcttaagaagaagaaagtgt 38435715  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    |||||| ||| || | |||||  |||| |||||  |||| | |||||| |||||||| |||| |||||||||||||||||||| |||||    
T  38435716 aacagttttcccatccgaactctgatatcgtttgaccaatggtttttacggtctaaatgttatttcaaaacaaagttaaaataaaggcc 38435804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 123 - 311
Target Start/End: Complemental strand, 42995646 - 42995459
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| ||| ||||||  ||| ||||| ||| | ||||||||||| |||||||||||||||||||| || |||||||||||||     
T  42995646 tgaacccctcaagccataaaaatcagtcaactcaagtcatgcatggtctcagaaccatgaa-aaaaggaagaaaatgacctcttaagaagaagaaagtgt 42995548  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    |||||| ||| || | |||||  |||| |||||  |||| | |||||| |||||||| |||| |||||||||||||||||||| |||||    
T  42995547 aacagttttcccatccgaactctgatatcgtttgaccaatggtttttacggtctaaatgttatttcaaaacaaagttaaaataaaggcc 42995459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 32960704 - 32960745
Alignment:
Q  264 ttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||| ||||||||||| ||||| |||||||||||||||||    
T  32960704 ttttttttggtctaaaagctactttaaaacaaagttaaaata 32960745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 305
Target Start/End: Original strand, 44651794 - 44651827
Alignment:
Q  272 ggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||||||||||||| |||||||||||||||||    
T  44651794 ggtctaaaagttactttaaaacaaagttaaaata 44651827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 10999301 - 10999237
Alignment:
Q  241 acttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||| |||||||| ||||   ||||||  |||||||||| ||||| |||||||||||||||||    
T  10999301 acttaggtaccgtttggccaggctttttttcggtctaaaagctactttaaaacaaagttaaaata 10999237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 38045845 - 38045781
Alignment:
Q  242 cttagataccgtttagcca-acgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||||||||||| |||| || ||||||  |||||||||  ||||| |||||||||||||||||    
T  38045845 cttagataccgtttggccagacttttttttcggtctaaaaactactttaaaacaaagttaaaata 38045781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 123 - 305
Target Start/End: Complemental strand, 99683 - 99503
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| ||| ||||||  ||| ||||| ||| | |||||||||||  ||||||||||||||||||| |||||||||||| ||||    
T  99683 tgaacccctcaagccataaaaatcattcaactcaagtcatgcatggtctcagaaccatgaa--aaaggaagaaaatgacctcttatgaagaagaatgtga 99586  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||| ||| ||||||||||||||||||||||  | || |||||||| ||||||||||||| ||||||||||||||||||||    
T  99585 aacagtgttcccagctgaacttagataccgtttgacaaaggttttttacggtctaaaagttatttcaaaacaaagttaaaata 99503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 133 - 311
Target Start/End: Complemental strand, 50539 - 50362
Alignment:
Q  133 aagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattc 232  Q
    ||||||||||| ||| |||| |  ||| ||||| ||| | ||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||| |||    
T  50539 aagccataaaaatcagtcaattcaagtcatgcatggtctcagaaccatgaa-aaaaggaagaaaatgacctcttatcaagaagaaaatgaaacagtgttc 50441  T
Q  233 tcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
     |||||||||||||||||||||| || || |||||||| ||||| |||||||||||||||||||||||||||| |||||    
T  50440 ccagctgaacttagataccgtttggctaaggttttttacggtcttaaagttacttcaaaacaaagttaaaataaaggcc 50362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 133 - 311
Target Start/End: Complemental strand, 58072 - 57895
Alignment:
Q  133 aagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattc 232  Q
    ||||||||||| ||| |||| |  ||| ||||| ||| | ||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||| |||    
T  58072 aagccataaaaatcagtcaattcaagtcatgcatggtctcagaaccatgaa-aaaaggaagaaaatgacctcttatcaagaagaaaatgaaacagtgttc 57974  T
Q  233 tcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
     |||||||||||||||||||||| || || |||||||| ||||| |||||||||||||||||||||||||||| |||||    
T  57973 ccagctgaacttagataccgtttggctaaggttttttacggtcttaaagttacttcaaaacaaagttaaaataaaggcc 57895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 175 - 311
Target Start/End: Original strand, 41986104 - 41986239
Alignment:
Q  175 aaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggt 274  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||  |||| |||||||| |||    
T  41986104 aaccatgaa-aaaaggaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccagctgaacttagataccgtttgaccaaggttttttacggt 41986202  T
Q  275 ctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    ||||||||||||| |||| |||||||||||| |||||    
T  41986203 ctaaaagttacttgaaaataaagttaaaataaaggcc 41986239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 190 - 311
Target Start/End: Original strand, 24079907 - 24080028
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||    
T  24079907 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacagtctaaaagttacttca 24080006  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  24080007 aaacaaagtaaaaataaaggcc 24080028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 190 - 311
Target Start/End: Original strand, 26926777 - 26926898
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||    
T  26926777 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacagtctaaaagttacttca 26926876  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  26926877 aaacaaagtaaaaataaaggcc 26926898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 190 - 311
Target Start/End: Complemental strand, 43330140 - 43330019
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||    
T  43330140 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacagtctaaaagttacttca 43330041  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  43330040 aaacaaagtaaaaataaaggcc 43330019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 190 - 305
Target Start/End: Complemental strand, 51450206 - 51450091
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||    
T  51450206 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacagtctaaaagttacttca 51450107  T
Q  290 aaacaaagttaaaata 305  Q
    ||||||||| ||||||    
T  51450106 aaacaaagtaaaaata 51450091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 190 - 311
Target Start/End: Original strand, 10261836 - 10261957
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||   | ||||||||||||||    
T  10261836 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacattataaaagttacttca 10261935  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  10261936 aaacaaagtaaaaataaaggcc 10261957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 190 - 311
Target Start/End: Complemental strand, 21562619 - 21562498
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||   | ||||||||||||||    
T  21562619 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacattataaaagttacttca 21562520  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  21562519 aaacaaagtaaaaataaaggcc 21562498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 123 - 311
Target Start/End: Original strand, 26871377 - 26871564
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | |||||||||||  || ||||||  ||| ||||| ||| | ||||||||||| |||||||||||||||||||| || |||||||||||||     
T  26871377 tgaacccctcaagccataaaaaacagtcaactcaagtcatgcatggtctcagaaccatgaa-aaaaggaagaaaatgacctcttaagaagaagaaagtgt 26871475  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    |||||| ||| || | |||||  |||| |||||  |||| | |||||| |||||||| |||| |||||||||||||||||||| |||||    
T  26871476 aacagttttcccatccgaactctgatatcgtttgaccaatggtttttacggtctaaatgttatttcaaaacaaagttaaaataaaggcc 26871564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 123 - 311
Target Start/End: Original strand, 29345994 - 29346182
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| ||| ||||||  ||| ||||| ||| | ||||| ||||| |||| |||||||||||| || ||||| |||||||||||    
T  29345994 tgaacccctcaagccataaaaatcagtcaactcaagtcatgcatggtctcagaacaatgaaaaaaaagaagaaaatgacatcttatgaggaagaaagtga 29346093  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    |||||| ||| || |||||||||| |||  ||| |||||  |||||   ||||||||||||||||||||| ||| |||||||| |||||    
T  29346094 aacagtgttcccaactgaacttaggtacaatttggccaaactttttagcggtctaaaagttacttcaaaataaaattaaaataaaggcc 29346182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 190 - 310
Target Start/End: Complemental strand, 19588147 - 19588026
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgt-tttttatggtctaaaagttacttc 288  Q
    ||||||||||||| | ||||||||||||||| ||||||| ||| |  ||||||||||| ||||||| | ||| |  |||||| |||||||||||||||||    
T  19588147 gaagaaaatgaccacttatgaagaagaaagtaaaacagtgttcgcgactgaacttagacaccgtttggtcaaagggtttttacggtctaaaagttacttc 19588048  T
Q  289 aaaacaaagttaaaatacaggc 310  Q
    || |||||||||||||| ||||    
T  19588047 aagacaaagttaaaataaaggc 19588026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 123 - 311
Target Start/End: Original strand, 9097230 - 9097427
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaa-gaa---- 217  Q
    ||||||| | || |||||||| ||| ||||||  ||| ||||| ||| | ||||||||||| ||| |||||||||||||||| ||||||||| |||        
T  9097230 tgaacccctcaaaccataaaaatcagtcaactcaagtcatgcatggtctcagaaccatgaa-aaagggaagaaaatgacctcttatgaagaaagaagcta 9097328  T
Q  218 -----agtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
         ||||||||| | ||| |||||||||| | |||| |||| || || ||||| || |||||||||||||||||||||||||||||||||| |||||    
T  9097329 cttcaagtgaaacattgttcccagctgaactcatatactgtttggctaaggttttctacggtctaaaagttacttcaaaacaaagttaaaataaaggcc 9097427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 311
Target Start/End: Original strand, 35831757 - 35831946
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatga-acaaaaggaagaaaatgacctcatatgaagaagaaagtg 221  Q
    ||||||| | ||||||||||| ||| ||||||  ||| |||||  || | ||||| |||| | |||| |||||||||||| || ||||| ||||||||||    
T  35831757 tgaacccctcaagccataaaaatcagtcaactcaagtcatgcatagtctcagaacaatgagaaaaaaagaagaaaatgacatcttatgaggaagaaagtg 35831856  T
Q  222 aaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    ||||||| ||| || |||||||||| ||| |||| |||||  |||||   |||| ||||||||||| |||| ||| ||||| || |||||    
T  35831857 aaacagtgttcccaactgaacttaggtacagtttggccaaactttttagcggtcaaaaagttacttaaaaataaaattaaactaaaggcc 35831946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 17976635 - 17976570
Alignment:
Q  240 aacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    ||||||| |||||||| ||||   ||||||  |||||||||| ||||| |||||||||||||||||    
T  17976635 aacttaggtaccgtttggccagactttttttcggtctaaaagctactttaaaacaaagttaaaata 17976570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 27288366 - 27288423
Alignment:
Q  248 taccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||||||||||   ||||||  |||||||||| ||||| |||||||||||||||||    
T  27288366 taccgtttagccagactttttttcggtctaaaagctactttaaaacaaagttaaaata 27288423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 28116742 - 28116783
Alignment:
Q  264 ttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    ||||||| |||||||||| ||||| |||||||||||||||||    
T  28116742 ttttttacggtctaaaagctactttaaaacaaagttaaaata 28116783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 32139580 - 32139539
Alignment:
Q  264 ttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    ||||||| |||||||||| ||||| |||||||||||||||||    
T  32139580 ttttttacggtctaaaagctactttaaaacaaagttaaaata 32139539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 305
Target Start/End: Complemental strand, 52620778 - 52620745
Alignment:
Q  272 ggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||||||||||||| |||||||||||||||||    
T  52620778 ggtctaaaagttactttaaaacaaagttaaaata 52620745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 305
Target Start/End: Original strand, 55208401 - 55208434
Alignment:
Q  272 ggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||||||||||||| |||||||||||||||||    
T  55208401 ggtctaaaagttactttaaaacaaagttaaaata 55208434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 28361403 - 28361443
Alignment:
Q  265 tttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    ||||| ||||||||||| ||||| |||||||||||||||||    
T  28361403 tttttttggtctaaaagctactttaaaacaaagttaaaata 28361443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 190 - 311
Target Start/End: Complemental strand, 3708687 - 3708566
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||    
T  3708687 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacagtctaaaagttacttca 3708588  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  3708587 aaacaaagtaaaaataaaggcc 3708566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 123 - 311
Target Start/End: Original strand, 35287081 - 35287263
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | || |||||||| ||| ||||||  ||| ||||| ||| ||||||||||||| ||||  |||||||||||||| |||||||||||||||||    
T  35287081 tgaacccctcaaaccataaaaatcagtcaactcaagtcatgcatggtctaagaaccatgaa-aaaataaagaaaatgacctcttatgaagaagaaagtga 35287179  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    |||| | ||| |||||||||||||||||      || || |||||||| | |||||||||||||| ||||||||||||||||| |||||    
T  35287180 aacattgttcccagctgaacttagatac-----ggcaaatgttttttacgatctaaaagttactttaaaacaaagttaaaataaaggcc 35287263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 190 - 311
Target Start/End: Original strand, 11868729 - 11868850
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||   | ||||||||||||||    
T  11868729 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacattataaaagttacttca 11868828  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  11868829 aaacaaagtaaaaataaaggcc 11868850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 190 - 311
Target Start/End: Original strand, 35360122 - 35360243
Alignment:
Q  190 gaagaaaatgacctcatatgaagaagaaagtgaaacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttca 289  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||   | ||||||||||||||    
T  35360122 gaagaaaatgacctcttatgaagaagaaagtgaaacagtgttcccgactgaacttagataccgtttggtcaaggttttttacattataaaagttacttca 35360221  T
Q  290 aaacaaagttaaaatacaggcc 311  Q
    ||||||||| |||||| |||||    
T  35360222 aaacaaagtaaaaataaaggcc 35360243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 18166721 - 18166783
Alignment:
Q  243 ttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||| |||||||| ||||   ||||||  |||||||||||||||| |||||||||||||||||    
T  18166721 ttaggtaccgtttggccagactttttttcggtctaaaagttactttaaaacaaagttaaaata 18166783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 3079907 - 3079842
Alignment:
Q  240 aacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    ||||||| |||||||| ||||   ||||||  |||||||||| ||||| |||||||||||||||||    
T  3079907 aacttaggtaccgtttggccagactttttttcggtctaaaagctactttaaaacaaagttaaaata 3079842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 305
Target Start/End: Original strand, 20313163 - 20313196
Alignment:
Q  272 ggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||||||||||||| |||||||||||||||||    
T  20313163 ggtctaaaagttactttaaaacaaagttaaaata 20313196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 123 - 311
Target Start/End: Complemental strand, 527 - 340
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| ||| ||||||  ||| ||||| ||| | ||||||||||| |||||||||| ||||||||| || |||||||||||||     
T  527 tgaacccctcaagccataaaaatcagtcaactcaagtcatgcatggtctcagaaccatgaa-aaaaggaagacaatgacctcttaagaagaagaaagtgt 429  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    |||||| ||| || | |||||  |||| |||||  |||| | |||||| |||||||| |||| |||||||||||||||||||| |||||    
T  428 aacagttttcccatccgaactctgatatcgtttgaccaatggtttttacggtctaaatgttatttcaaaacaaagttaaaataaaggcc 340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 1876 - 1830
Alignment:
Q  265 tttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    |||||| |||||||| |||| |||||||||||||||||||| |||||    
T  1876 tttttacggtctaaatgttatttcaaaacaaagttaaaataaaggcc 1830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 123 - 311
Target Start/End: Original strand, 55167 - 55354
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | |||||||||||  || ||||||  ||| ||||| ||| | ||||||||||| |||||||||||||||||||| || |||||||||||||     
T  55167 tgaacccctcaagccataaaaagcagtcaactcaagtcatgcatggtctcagaaccatgaa-aaaaggaagaaaatgacctcttaagaagaagaaagtgt 55265  T
Q  223 aacagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    |||||| ||| || | |||||  |||| |||||  |||| | |||||| |||||||| |||| |||||||||||||||||||| |||||    
T  55266 aacagttttcccatccgaactctgatatcgtttgaccaatggtttttacggtctaaatgttatttcaaaacaaagttaaaataaaggcc 55354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 123 - 255
Target Start/End: Original strand, 156356 - 156487
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| ||| ||||||  ||| ||||| ||| | ||||||||| | |||||||||||||||||||| ||||||||||||||||     
T  156356 tgaacccctcaagccataaaaatcagtcaactcaagtcatgcatggtctcagaaccatgta-aaaaggaagaaaatgacctcttatgaagaagaaagtgt 156454  T
Q  223 aacagtattctcagctgaacttagataccgttt 255  Q
    || ||  ||| ||||||||||||||||||||||    
T  156455 aagagagttcccagctgaacttagataccgttt 156487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 311
Target Start/End: Original strand, 156492 - 156526
Alignment:
Q  277 aaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    ||||||||||||||||||||||||||||| |||||    
T  156492 aaaagttacttcaaaacaaagttaaaataaaggcc 156526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 30192 - 30296
Alignment:
Q  123 tgaacccataaagccataaaactcactcaactatagtaatgcagggtataagaaccatgaacaaaaggaagaaaatgacctcatatgaagaagaaagtga 222  Q
    ||||||| | ||||||||||| ||| |||| |  ||| ||||| ||| | ||||||||||| |||||||||||||||| ||| |||||||||||||||||    
T  30192 tgaacccctcaagccataaaaatcagtcaattcaagtcatgcatggtctcagaaccatgaa-aaaaggaagaaaatgatctcttatgaagaagaaagtga 30290  T
Q  223 aacagt 228  Q
    ||||||    
T  30291 aacagt 30296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 31451 - 31538
Alignment:
Q  224 acagtattctcagctgaacttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaatacaggcc 311  Q
    ||||| ||| || |||||||||||||| |||| || || ||||||||  |||||||| |||||||||||||||||||||||| |||||    
T  31451 acagtgttcccaactgaacttagatactgtttggcaaaggttttttactgtctaaaaattacttcaaaacaaagttaaaataaaggcc 31538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1822 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1822
Description:

Target: scaffold1822; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 409 - 368
Alignment:
Q  264 ttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    ||||||| |||||||||||||||| |||||||||||||||||    
T  409 ttttttacggtctaaaagttactttaaaacaaagttaaaata 368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1793 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1793
Description:

Target: scaffold1793; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 175 - 216
Alignment:
Q  264 ttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    ||||||| |||||||||||||||| |||||||||||||||||    
T  175 ttttttacggtctaaaagttactttaaaacaaagttaaaata 216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 1640 - 1599
Alignment:
Q  264 ttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||| ||||||||||| ||||| |||||||||||||||||    
T  1640 ttttttttggtctaaaagctactttaaaacaaagttaaaata 1599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 25899 - 25835
Alignment:
Q  241 acttagataccgtttagccaacgttttttatggtctaaaagttacttcaaaacaaagttaaaata 305  Q
    |||||| |||||||| ||||   ||||||  |||||||||| ||||| |||||||||||||||||    
T  25899 acttaggtaccgtttggccaggctttttttcggtctaaaagctactttaaaacaaagttaaaata 25835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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