View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_150 (Length: 256)

Name: NF6865A_low_150
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_150
NF6865A_low_150
[»] chr7 (25 HSPs)
chr7 (93-245)||(11684057-11684209)
chr7 (5-245)||(38614327-38614566)
chr7 (78-239)||(30109024-30109185)
chr7 (5-239)||(45464683-45464917)
chr7 (35-245)||(2168343-2168554)
chr7 (102-245)||(46995119-46995261)
chr7 (35-220)||(3690540-3690725)
chr7 (11-239)||(4321447-4321673)
chr7 (5-69)||(11685331-11685395)
chr7 (35-245)||(23954794-23955003)
chr7 (5-69)||(34784377-34784441)
chr7 (33-239)||(48302538-48302744)
chr7 (1-168)||(1547241-1547405)
chr7 (78-183)||(48705396-48705499)
chr7 (78-239)||(34692250-34692410)
chr7 (35-220)||(36756398-36756584)
chr7 (35-220)||(36762195-36762381)
chr7 (140-225)||(40785079-40785164)
chr7 (39-126)||(12903939-12904026)
chr7 (93-156)||(8421858-8421921)
chr7 (35-69)||(36766074-36766108)
chr7 (35-69)||(46811095-46811129)
chr7 (5-54)||(34692439-34692488)
chr7 (35-68)||(40785216-40785249)
chr7 (1-69)||(48850933-48851001)
[»] chr1 (13 HSPs)
chr1 (33-245)||(42558335-42558546)
chr1 (5-239)||(5784366-5784600)
chr1 (102-245)||(46637223-46637365)
chr1 (102-245)||(31803190-31803332)
chr1 (102-245)||(18183063-18183205)
chr1 (20-220)||(44158807-44159009)
chr1 (35-220)||(42135761-42135945)
chr1 (35-220)||(45379474-45379658)
chr1 (1-169)||(51123115-51123280)
chr1 (5-239)||(11152903-11153136)
chr1 (5-69)||(25172701-25172765)
chr1 (102-220)||(33679696-33679814)
chr1 (36-68)||(18180868-18180900)
[»] chr3 (21 HSPs)
chr3 (7-243)||(26448108-26448342)
chr3 (35-236)||(48634872-48635073)
chr3 (35-245)||(1847154-1847364)
chr3 (1-143)||(40962981-40963122)
chr3 (1-157)||(30501455-30501610)
chr3 (37-245)||(33112233-33112441)
chr3 (111-239)||(37886239-37886367)
chr3 (35-239)||(23775149-23775353)
chr3 (93-245)||(45897487-45897640)
chr3 (1-169)||(49494845-49495011)
chr3 (107-245)||(2975887-2976024)
chr3 (78-239)||(41945600-41945760)
chr3 (78-245)||(35861973-35862141)
chr3 (35-224)||(24382104-24382293)
chr3 (1-233)||(32842785-32843017)
chr3 (5-216)||(31885878-31886088)
chr3 (35-220)||(33851371-33851555)
chr3 (35-161)||(10380511-10380638)
chr3 (192-238)||(13466609-13466655)
chr3 (5-69)||(2975819-2975883)
chr3 (192-245)||(22218719-22218772)
[»] chr2 (14 HSPs)
chr2 (5-239)||(11021891-11022125)
chr2 (22-228)||(11313197-11313402)
chr2 (5-239)||(28247674-28247908)
chr2 (102-245)||(35739-35881)
chr2 (78-239)||(38149535-38149696)
chr2 (1-244)||(10715464-10715690)
chr2 (35-239)||(37418263-37418469)
chr2 (35-239)||(42880309-42880511)
chr2 (6-69)||(363354-363418)
chr2 (1-69)||(7744932-7745000)
chr2 (36-196)||(40150664-40150825)
chr2 (36-147)||(40152135-40152246)
chr2 (102-220)||(42002990-42003108)
chr2 (1-69)||(17948601-17948669)
[»] chr5 (19 HSPs)
chr5 (35-237)||(38177023-38177225)
chr5 (35-237)||(38204247-38204449)
chr5 (92-245)||(35291492-35291644)
chr5 (92-245)||(43317176-43317329)
chr5 (93-245)||(18727012-18727164)
chr5 (35-239)||(32836267-32836470)
chr5 (35-245)||(32089411-32089625)
chr5 (103-245)||(40330004-40330146)
chr5 (93-245)||(18341593-18341745)
chr5 (5-239)||(42619647-42619875)
chr5 (5-69)||(1344478-1344542)
chr5 (78-169)||(6116465-6116556)
chr5 (1-64)||(24497749-24497812)
chr5 (5-69)||(1343550-1343614)
chr5 (1-169)||(27350095-27350260)
chr5 (93-217)||(35400226-35400350)
chr5 (198-245)||(33257262-33257309)
chr5 (192-239)||(27076963-27077010)
chr5 (32-69)||(27077123-27077160)
[»] chr4 (21 HSPs)
chr4 (5-239)||(39922506-39922740)
chr4 (5-239)||(39084651-39084885)
chr4 (5-239)||(39190318-39190552)
chr4 (5-239)||(42879642-42879876)
chr4 (78-239)||(43778818-43778979)
chr4 (5-239)||(5485551-5485785)
chr4 (78-245)||(4519959-4520125)
chr4 (6-238)||(44993167-44993399)
chr4 (1-69)||(13438207-13438275)
chr4 (4-68)||(39294553-39294617)
chr4 (35-220)||(44556998-44557183)
chr4 (36-219)||(27626246-27626429)
chr4 (93-239)||(32653130-32653275)
chr4 (35-213)||(35997284-35997462)
chr4 (131-238)||(10544498-10544605)
chr4 (6-135)||(25994708-25994841)
chr4 (35-225)||(51041126-51041314)
chr4 (4-69)||(230805-230869)
chr4 (5-69)||(13449984-13450048)
chr4 (205-245)||(27385940-27385980)
chr4 (94-245)||(28101029-28101179)
[»] chr8 (27 HSPs)
chr8 (5-239)||(40019514-40019748)
chr8 (35-245)||(9876053-9876262)
chr8 (5-147)||(25356691-25356834)
chr8 (35-225)||(461567-461756)
chr8 (35-225)||(33159047-33159236)
chr8 (102-245)||(33748793-33748935)
chr8 (5-245)||(33369120-33369362)
chr8 (4-69)||(10269206-10269271)
chr8 (4-69)||(11031763-11031828)
chr8 (78-223)||(25371636-25371781)
chr8 (93-234)||(38881848-38881992)
chr8 (35-220)||(1321829-1322015)
chr8 (78-239)||(28432650-28432810)
chr8 (140-225)||(37525333-37525418)
chr8 (35-147)||(8655640-8655752)
chr8 (35-190)||(42895161-42895317)
chr8 (8-69)||(9186302-9186363)
chr8 (192-245)||(11719994-11720047)
chr8 (4-69)||(12515435-12515499)
chr8 (192-245)||(31822975-31823028)
chr8 (173-220)||(32823816-32823863)
chr8 (94-169)||(44620244-44620318)
chr8 (8-69)||(10268162-10268223)
chr8 (192-245)||(11790317-11790370)
chr8 (20-69)||(31823142-31823191)
chr8 (8-69)||(38881763-38881824)
chr8 (207-239)||(42895321-42895353)
[»] chr6 (5 HSPs)
chr6 (5-239)||(17950919-17951152)
chr6 (5-239)||(35174740-35174974)
chr6 (93-239)||(34344824-34344969)
chr6 (1-233)||(17936042-17936275)
chr6 (20-61)||(31210129-31210170)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-169)||(37856-38022)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 93 - 245
Target Start/End: Complemental strand, 11684209 - 11684057
Alignment:
Q  93 caaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaa-gcaattatgaaagtcaagcttt 191  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| |||||     
T  11684209 caaaatccccaaaatttcttcaagcaaaattgttcaatttgaatccgaaatgatgaggggtgg-tgtaagggcaaaaagcaattatgaaagtcgagcttc 11684111  T
Q  192 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  11684110 atctttaagctccatgtttaatggtgatgtgagagtacttgaatgttggtgtcc 11684057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 38614566 - 38614327
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaa 104  Q
    |||||||||| | | ||||| ||||||   ||||||| || ||||||||| ||||||||||||||        |||||||| ||||  |||||||  |||    
T  38614566 ccaaaatttcctccaataataagtggtccagttcttctccgattcaaaaaacttcaaaccctaattttttcgtattgaatctgaaagccaaaatcctcaa 38614467  T
Q  105 aatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctcc 204  Q
    |||||||| |||||||| | || || ||||||||||||||||| ||||||||  || ||| |||| || ||||||||||| ||||| ||||| |||||||    
T  38614466 aatttcttgaagcaaaactattgaaattgaatctgaaatgatg-ggggtgggaatatgggaaaaaacagttatgaaagtcgagcttcatcttcaagctcc 38614368  T
Q  205 atgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    | || |||||||||||||||||||||| ||||||| |||||    
T  38614367 aagtctaatggtgatgtgagagtgcttaaatgttggtgtcc 38614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 239
Target Start/End: Original strand, 30109024 - 30109185
Alignment:
Q  78 attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattat 177  Q
    |||||||| |||| ||||||||  |||||||  ||||||||||| |||| || |||||||| |||||||| | |||||   || ||||||||  || |||    
T  30109024 attgaatctgaaaatcaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatctaaaatgatgggaggtggtcatatgggcaaaaagaactat 30109123  T
Q  178 gaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
     |||||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||||    
T  30109124 caaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgttg 30109185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 45464917 - 45464683
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaa 104  Q
    ||||| |||||||| |||||||  ||| |||||||||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||    
T  45464917 ccaaattttctttcaataattaagggtcacgttcttccccaaatcaaaaaattacaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaa 45464818  T
Q  105 aatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctcc 204  Q
    ||||  ||||||||| | |||| || |||||||| |||||||| | |||||   || ||||||||  |  ||| |||||||||||| ||||| |  ||||    
T  45464817 aattcattcaagcaatactgttgaaattgaatctaaaatgatgggaggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctcc 45464718  T
Q  205 atgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
    |||||||||||||||||||||||||||||||||||    
T  45464717 atgtttaatggtgatgtgagagtgcttgaatgttg 45464683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 245
Target Start/End: Complemental strand, 2168554 - 2168343
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    ||||||| |||||||||||| ||||||||||||||        |||||||| ||||  |||||||  ||||||||||| |||||||| | || || ||||    
T  2168554 gttcttctccaattcaaaaaacttcaaaccctaattttttcgtattgaatctgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattga 2168455  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaa--ttatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttg 232  Q
    |||| |||||||| ||||||||  || ||| ||||  |   ||||||||||| ||||||||||| |||||||| ||||||||||||||| ||||||||      
T  2168454 atctaaaatgatg-ggggtgggaatatgggaaaaaaaatagttatgaaagtcgagctttatcttcaagctccaagtttaatggtgatgtcagagtgctca 2168356  T
Q  233 aatgttgatgtcc 245  Q
    ||||||| |||||    
T  2168355 aatgttggtgtcc 2168343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 245
Target Start/End: Original strand, 46995119 - 46995261
Alignment:
Q  102 caaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagc 201  Q
    ||||||||||| |||||||| | || || ||||||||||||||||| ||||||||  || ||  | || |  ||||||||||||||||| ||||| ||||    
T  46995119 caaaatttcttgaagcaaaactattgaaattgaatctgaaatgatgtggggtgggaatatggaaataa-cggttatgaaagtcaagcttcatcttcaagc 46995217  T
Q  202 tccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    |||| ||||||||||| ||||||||||||||||||||| |||||    
T  46995218 tccaagtttaatggtgttgtgagagtgcttgaatgttggtgtcc 46995261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 220
Target Start/End: Original strand, 3690540 - 3690725
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    |||||||||||||||||||| ||| ||||||||||        |||||||| ||||  |||||||  ||||||||||| |||||||| | || || ||||    
T  3690540 gttcttccccaattcaaaaaacttgaaaccctaattttttcgtattgaatctgaaagccaaaatccacaaaatttcttgaagcaaaactattgaaattga 3690639  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 220  Q
    |||||||||||   ||||||||  || ||| ||||    ||||||||||||||||| ||||| |||||||| ||||| ||||||||    
T  3690640 atctgaaatgaaatggggtgggaatatgggaaaaaattgttatgaaagtcaagcttcatcttcaagctccaagtttagtggtgatg 3690725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 4321447 - 4321673
Alignment:
Q  11 tttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttc 110  Q
    |||||| | |||||||  ||| |||||||||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||||||      
T  4321447 tttcttccaataattaagggtcacgttcttccccaaatcaaaaaattgcaaaccctaat-ttttttaattgaatctgaaaaccaaaatctgcaaaattca 4321545  T
Q  111 ttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgttt 210  Q
    ||||||||||| | || || |||||||| |||||||| |||||||   || ||||||||  |  ||| |||||||||||| ||||| |  ||||||||||    
T  4321546 ttcaagcaaaactattgaaattgaatctaaaatgatg-ggggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctccatgttt 4321644  T
Q  211 aatggtgatgtgagagtgcttgaatgttg 239  Q
    |||| ||||||||||||||||||||||||    
T  4321645 aatgttgatgtgagagtgcttgaatgttg 4321673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 11685395 - 11685331
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||||||    
T  11685395 ccaaaatttctttcaataattagaggtaacgttcttcaccaattcaaaaagcttcaaaacctaat 11685331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 245
Target Start/End: Complemental strand, 23955003 - 23954794
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    ||||||| ||||||||| || ||||||||||||||        |||||||| ||||   ||||||  ||||||||||| |||||||| | || |  ||||    
T  23955003 gttcttcgccaattcaacaaacttcaaaccctaatttcttggtattgaatctgaaagctaaaatcctcaaaatttcttgaagcaaaactattgacattga 23954904  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaa 234  Q
    ||||||||||| | |||||| |  || ||  |||| || |||||||| || ||||| |||||  ||||||| ||||||||||| ||| ||||||||||||    
T  23954903 atctgaaatgacg-ggggtgagaatatggaaaaaaacagttatgaaaatcgagcttcatcttcgagctccaagtttaatggtgttgttagagtgcttgaa 23954805  T
Q  235 tgttgatgtcc 245  Q
    ||||| |||||    
T  23954804 tgttggtgtcc 23954794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 34784377 - 34784441
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||||| || |||||||||||    
T  34784377 ccaaaatttatgtcaataattagtggtaacgttcttccccaattcaaaaaactccaaaccctaat 34784441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 239
Target Start/End: Original strand, 48302538 - 48302744
Alignment:
Q  33 acgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaattt 132  Q
    |||||||||||||| |||||||  | |||||||||||        |||||||  ||||  |||||||  |||||||  ||||||||||| |||| || ||    
T  48302538 acgttcttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatatgaaaaccaaaatcttcaaaattcattcaagcaaaactgttgaaatt 48302637  T
Q  133 gaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttg 232  Q
    ||| |  |||||||  |||||||   || ||||||||  |  ||| ||||||||| || ||||| |   |||||||||||||||||||||||||||||||    
T  48302638 gaaacaaaaatgattgggggtggtcatatgggcaaaaagagctatcaaagtcaagtttcatcttcatcttccatgtttaatggtgatgtgagagtgcttg 48302737  T
Q  233 aatgttg 239  Q
    |||||||    
T  48302738 aatgttg 48302744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 1547405 - 1547241
Alignment:
Q  1 attcccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaat-tcaaaatc 99  Q
    |||||||||||| ||||| ||||||||||||||||||||||||| ||| ||| | | ||||||||||||        ||||||| ||||||   ||||||    
T  1547405 attcccaaaatt-ctttcaataattagtggtaacgttcttccccgattgaaataacctcaaaccctaat--tttttgattgaattcgaaataaaaaaatc 1547309  T
Q  100 accaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaa 168  Q
     |||||||| |||||| ||||| ||||  | ||||||  ||||||||| |||||||||||| |||||||    
T  1547308 cccaaaattccttcaaacaaaactgttgtaattgaatacgaaatgatg-ggggtgggtgtatgggcaaa 1547241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 48705499 - 48705396
Alignment:
Q  78 attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattat 177  Q
    |||||||||||||  || |||| ||| ||||||||||||||||| ||||||| ||||||| ||||||||  ||||||||  || ||||||||  ||||||    
T  48705499 attgaatccgaaaaccagaatctccataatttcttcaagcaaaactgttcaaattgaatccgaaatgat--ggggtgggcatatgggcaaaaagaattat 48705402  T
Q  178 gaaagt 183  Q
     |||||    
T  48705401 caaagt 48705396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 239
Target Start/End: Complemental strand, 34692410 - 34692250
Alignment:
Q  78 attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattat 177  Q
    |||||||| ||||  |||||||  |||||||  ||||||||||| | || || |||||||| |||||||| ||||| |   || ||||||||  |  |||    
T  34692410 attgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaactattgaaattgaatctaaaatgatg-ggggtagtcatatgggcaaaaagagctat 34692312  T
Q  178 gaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
     |||||||||||| ||||| |  || |||||||||| ||||||||||| |||||||||||||    
T  34692311 caaagtcaagcttcatcttcatcctacatgtttaatagtgatgtgagaatgcttgaatgttg 34692250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 220
Target Start/End: Complemental strand, 36756584 - 36756398
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnn-attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttg 133  Q
    |||||||||||||||||||| ||||||||||||||         ||||||||  |||  |||| ||  ||||||||||| |||||||| | || || |      
T  36756584 gttcttccccaattcaaaaaacttcaaaccctaatttttttcgtattgaatcataaaaccaaattcctcaaaatttcttgaagcaaaactattgaaataa 36756485  T
Q  134 aatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 220  Q
    ||||  |||||||| ||||||||  || ||| |||| |  ||||||||||| ||||| ||||| |||||||| ||||||||||||||    
T  36756484 aatccaaaatgatggggggtgggaatatgggaaaaaactgttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgatg 36756398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 220
Target Start/End: Complemental strand, 36762381 - 36762195
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnn-attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttg 133  Q
    |||||||||||||||||||| ||||||||||||||         ||||||||  |||  |||| ||  ||||||||||| |||||||| | || || |      
T  36762381 gttcttccccaattcaaaaaacttcaaaccctaatttttttcgtattgaatcataaaaccaaattcctcaaaatttcttgaagcaaaactattgaaataa 36762282  T
Q  134 aatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 220  Q
    ||||  |||||||| ||||||||  || ||| |||| |  ||||||||||| ||||| ||||| |||||||| ||||||||||||||    
T  36762281 aatccaaaatgatggggggtgggaatatgggaaaaaactgttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgatg 36762195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 40785164 - 40785079
Alignment:
Q  140 aaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgaga 225  Q
    |||||||| ||||||||  || ||  |||| |||||||||||||| |||||  |||| |||||||| |||||||||||||||||||    
T  40785164 aaatgatggggggtgggaatatggaaaaaaacaattatgaaagtcgagcttcttcttcaagctccaagtttaatggtgatgtgaga 40785079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 12904026 - 12903939
Alignment:
Q  39 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgtt 126  Q
    ||||||||||| |||| | ||||||||||||        |||||| ||||||| |||| || ||||||||||||||||||||||||||    
T  12904026 ttccccaattctaaaaacgtcaaaccctaatttgtttttattgaacccgaaatccaaagtctccaaaatttcttcaagcaaaattgtt 12903939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 8421858 - 8421921
Alignment:
Q  93 caaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtggg 156  Q
    |||||||  ||||||||||| ||||||||   || || ||||||||||||||||||||||||||    
T  8421858 caaaatccacaaaatttcttgaagcaaaacgcttgaaattgaatctgaaatgatgaggggtggg 8421921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 36766108 - 36766074
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    |||||||||||||||||||| ||||||||||||||    
T  36766108 gttcttccccaattcaaaaaacttcaaaccctaat 36766074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 46811095 - 46811129
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    |||||||||||||||||||| ||||||||||||||    
T  46811095 gttcttccccaattcaaaaaacttcaaaccctaat 46811129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 34692488 - 34692439
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaa 54  Q
    ||||| |||||| | |||||||||||| |||||||||||||| |||||||    
T  34692488 ccaaattttcttccaataattagtggtcacgttcttccccaaatcaaaaa 34692439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 40785249 - 40785216
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaa 68  Q
    |||||||||||||||||||| |||||||||||||    
T  40785249 gttcttccccaattcaaaaatcttcaaaccctaa 40785216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 48850933 - 48851001
Alignment:
Q  1 attcccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    |||||||||||||||| |  |||||  ||  || |||||||||||||||||||| ||| ||||||||||    
T  48850933 attcccaaaatttcttccattaattgatgccaaagttcttccccaattcaaaaaacttaaaaccctaat 48851001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 42558335 - 42558546
Alignment:
Q  33 acgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaattt 132  Q
    |||||||| |||||||| |||| ||||||||||||||        ||||||||| |||| |||||||  ||||||||||||||||| |||||||||  ||    
T  42558335 acgttctttcccaattctaaaaacttcaaaccctaat-tcttttgattgaatccaaaatccaaaatccgcaaaatttcttcaagcataattgttcagatt 42558433  T
Q  133 gaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttg 232  Q
    ||||||||||||||| | |||||| ||| |||||||| || |||| ||| |  ||||| ||||| |||||||||||||||||||||||||||||||||||    
T  42558434 gaatctgaaatgatgggtggtgggcgtatgggcaaaatcagttatcaaatttgagcttcatcttcaagctccatgtttaatggtgatgtgagagtgcttg 42558533  T
Q  233 aatgttgatgtcc 245  Q
    ||||||| |||||    
T  42558534 aatgttggtgtcc 42558546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 5784600 - 5784366
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaa 104  Q
    ||||| |||||| | |||||||  ||| |||||||||||||| |||||||  | |||||||||||        |||||||| |||| ||||||||  |||    
T  5784600 ccaaattttcttccaataattaagggtcacgttcttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaatcaaaatctgcaa 5784501  T
Q  105 aatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctcc 204  Q
    ||||  ||||||||||| |||| || |||||||| ||||||||||||||||   || || |||||  |  ||| |||||||||||| ||||| |  ||||    
T  5784500 aattcattcaagcaaaactgttgaaattgaatctaaaatgatgaggggtggtcatatggacaaaaagagctatcaaagtcaagcttcatcttcatcctcc 5784401  T
Q  205 atgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
    |||||||||||||||||||||||||||||||||||    
T  5784400 atgtttaatggtgatgtgagagtgcttgaatgttg 5784366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 245
Target Start/End: Original strand, 46637223 - 46637365
Alignment:
Q  102 caaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagc 201  Q
    ||||||||||| |||||||| | || || |||||||| |||||||| ||||||||  || ||  |||| |  ||||||||||||||||| ||||| ||||    
T  46637223 caaaatttcttgaagcaaaactattgaaattgaatctaaaatgatgtggggtgggaatatggaaaaaa-cggttatgaaagtcaagcttcatcttcaagc 46637321  T
Q  202 tccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    |||| ||||||||||| ||||||||||||||||||||| |||||    
T  46637322 tccaagtttaatggtgttgtgagagtgcttgaatgttggtgtcc 46637365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 245
Target Start/End: Complemental strand, 31803332 - 31803190
Alignment:
Q  102 caaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagc 201  Q
    ||||||||||| |||||||| | || || ||||||||||||||||| ||||||||  || ||  |||| |  |||||||||||||| || ||||| ||||    
T  31803332 caaaatttcttgaagcaaaactattgaaattgaatctgaaatgatgtggggtgggaatatggaaaaaa-cggttatgaaagtcaagtttcatcttcaagc 31803234  T
Q  202 tccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    |||| ||||||| ||| ||||||||||||||||||||| |||||    
T  31803233 tccaagtttaatagtgttgtgagagtgcttgaatgttggtgtcc 31803190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 102 - 245
Target Start/End: Original strand, 18183063 - 18183205
Alignment:
Q  102 caaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagc 201  Q
    ||||||||||| |||||||| | || || ||| ||||||||||||| ||||||||   | ||| |||| || ||||||||||| || || ||||| ||||    
T  18183063 caaaatttcttgaagcaaaactattgaaattggatctgaaatgatg-ggggtgggaacatgggaaaaaacagttatgaaagtcgagtttcatcttcaagc 18183161  T
Q  202 tccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    |||| |||||||||||||||||||  |||||||||||| |||||    
T  18183162 tccaagtttaatggtgatgtgagaaagcttgaatgttggtgtcc 18183205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 44159009 - 44158807
Alignment:
Q  20 ataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnn--attgaatccgaaattcaaaatcaccaaaatttcttcaagc 117  Q
    ||||| |||||| | |||||||||||||||||||| ||| ||||||||||          |||||||| ||||  |||||||  ||||||||||| ||||    
T  44159009 ataataagtggtcaagttcttccccaattcaaaaaacttgaaaccctaattttttttcgtattgaatctgaaagccaaaatccacaaaatttcttgaagc 44158910  T
Q  118 aaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtg 217  Q
    |||| | || || ||||||||||||||| | ||||||||  || ||| ||||  | ||||||||||| ||||| ||||| ||||| || |||||||||||    
T  44158909 aaaactattgaaattgaatctgaaatgaaggggggtgggattatgggaaaaaatagttatgaaagtcgagcttcatcttcaagcttcaagtttaatggtg 44158810  T
Q  218 atg 220  Q
    |||    
T  44158809 atg 44158807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 220
Target Start/End: Complemental strand, 42135945 - 42135761
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    |||||||||||||||||||| ||| ||||| ||||        |||||||| |||| |||||||   ||||||||||| |||||||| | || || ||||    
T  42135945 gttcttccccaattcaaaaaacttgaaacc-taattttttcgtattgaatctgaaagtcaaaattcacaaaatttcttgaagcaaaactattgaaattga 42135847  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 220  Q
    ||||||||||| | ||||||||  || ||| ||||    ||||||||||| ||||| ||||| |||||||| ||||||||||||||    
T  42135846 atctgaaatgaaggggggtgggaatatgggaaaaaattgttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgatg 42135761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 220
Target Start/End: Original strand, 45379474 - 45379658
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    |||||||||||||||| ||| ||| ||||||||||        |||||||| ||||  |||||||  ||||||||||| |||||||| | || || ||||    
T  45379474 gttcttccccaattcagaaaacttgaaaccctaatttttttgtattgaatctgaaagccaaaatccacaaaatttcttgaagcaaaactattgaaattga 45379573  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 220  Q
    ||||||||||| | ||||||||  || ||| ||||    ||||||||||| ||||| |||||||||||||| |||||| |||||||    
T  45379574 atctgaaatgaag-ggggtgggaatatgggaaaaaattgttatgaaagtcgagcttcatctttaagctccaagtttaacggtgatg 45379658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 51123280 - 51123115
Alignment:
Q  1 attcccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatca 100  Q
    |||||||||| ||||| | |||||||| |||||||||||||||||||| ||| | | ||||||||||||        ||||||||||||    ||||||     
T  51123280 attcccaaaaattcttccaataattagaggtaacgttcttccccaattgaaataacctcaaaccctaat--tttttgattgaatccgaatcaaaaaatcc 51123183  T
Q  101 ccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaa 169  Q
    |||||||| ||||||  |||| ||||  | ||||||||||||||||| |||||||||||| ||||||||    
T  51123182 ccaaaattccttcaaataaaactgttgtaattgaatctgaaatgatg-ggggtgggtgtatgggcaaaa 51123115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 11152903 - 11153136
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaa 104  Q
    ||||| |||||| | |||||||  ||| | |||||||||||| |||||||  | |||||||||||        |||||||| ||||   ||||||  |||    
T  11152903 ccaaattttcttccaataattaagggtcatgttcttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaactaaaatctgcaa 11153002  T
Q  105 aatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctcc 204  Q
    ||||  ||||||||||| |||| || |||||||| |||||||| |||||||   || ||||||||  |  ||| |||||||| ||| ||||| |  ||||    
T  11153003 aattcattcaagcaaaactgttgaaattgaatctaaaatgatg-ggggtggtcatatgggcaaaaagagctatcaaagtcaaacttcatcttcatcctcc 11153101  T
Q  205 atgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
    ||||||||||||||||||||| ||||||| |||||    
T  11153102 atgtttaatggtgatgtgagaatgcttgagtgttg 11153136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 25172765 - 25172701
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    |||||||||||| | ||||||||||||||||||||||||||||| |||||  |||||||||||||    
T  25172765 ccaaaatttcttccaataattagtggtaacgttcttccccaatttaaaaaaattcaaaccctaat 25172701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 33679696 - 33679814
Alignment:
Q  102 caaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagc 201  Q
    ||||||||||| |||||||| | || || |  |||| ||||||||| ||||||||  ||  || |||| |  ||||||||||| ||||| ||||| ||||    
T  33679696 caaaatttcttgaagcaaaactattgaaataaaatccgaaatgatggggggtgggaatataggaaaaaactgttatgaaagtcgagcttcatcttcaagc 33679795  T
Q  202 tccatgtttaatggtgatg 220  Q
    |||| ||||||||||||||    
T  33679796 tccaagtttaatggtgatg 33679814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 18180868 - 18180900
Alignment:
Q  36 ttcttccccaattcaaaaagcttcaaaccctaa 68  Q
    ||||||||||||||||||| |||||||||||||    
T  18180868 ttcttccccaattcaaaaaacttcaaaccctaa 18180900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 26448108 - 26448342
Alignment:
Q  7 aaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaa 106  Q
    |||||||||| | ||||||||||||||||| ||| | ||||||||||| ||||||||||||||        ||||||||  |||  || |||  ||||||    
T  26448108 aaaatttcttccaataattagtggtaacgtcctttctcaattcaaaaaacttcaaaccctaat-tttttttattgaatctaaaaaccagaatacccaaaa 26448206  T
Q  107 tttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccat 206  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| ||||  || ||||| ||  | |||| |||||||||||| | ||| |||||||||    
T  26448207 tttcttcaagcaaaactgttcaaattgaatctgaaatgatgaggg-tgggcatatgggcacaaagagttatcaaagtcaagcttcaccttcaagctccat 26448305  T
Q  207 gtttaatggtgatgtgagagtgcttgaatgttgatgt 243  Q
     ||||||||||||||||||||| ||||||||||||||    
T  26448306 ctttaatggtgatgtgagagtgtttgaatgttgatgt 26448342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 35 - 236
Target Start/End: Complemental strand, 48635073 - 48634872
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    |||||||||||||||||||| ||||||||||||||        |||||||  |||| ||||||||  ||||||||||| |||||||| | || || ||||    
T  48635073 gttcttccccaattcaaaaaacttcaaaccctaattttttcgtattgaatttgaaagtcaaaatcctcaaaatttcttaaagcaaaactattgaaattga 48634974  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaa 234  Q
    ||||||||||||| ||||||||  || ||  |||| || ||||||||||| ||||| |||||  ||||||| ||||||||||| ||||||||||||||||    
T  48634973 atctgaaatgatggggggtgggaatatggaaaaaaacagttatgaaagtcgagcttcatcttcgagctccaagtttaatggtgttgtgagagtgcttgaa 48634874  T
Q  235 tg 236  Q
    ||    
T  48634873 tg 48634872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 245
Target Start/End: Complemental strand, 1847364 - 1847154
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    |||||||||||||| ||||| || |||||||||||        |||||||  ||||  |||||||  ||||||||||| |||||||| | || |  ||||    
T  1847364 gttcttccccaatttaaaaaactacaaaccctaattttttcgtattgaatttgaaagccaaaatcctcaaaatttcttgaagcaaaactattgatattga 1847265  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaa 234  Q
    ||||||||||||| ||||||||  || ||| |||| || ||||||||||| ||||| ||||| |||||||| |||||||||||||||||||| |||||||    
T  1847264 atctgaaatgatggggggtgggaatatgggaaaaaacagttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgatgtgagagagcttgaa 1847165  T
Q  235 tgttgatgtcc 245  Q
    ||||| |||||    
T  1847164 tgttggtgtcc 1847154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 40963122 - 40962981
Alignment:
Q  1 attcccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatca 100  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||  |||||||||||||        ||||||||||||   || ||||     
T  40963122 attcccaaaatttcttacaataattagtggtaacgttcttccccaattcaaaaaaattcaaaccctaat-tttttttattgaatccgaataccagaatcc 40963024  T
Q  101 ccaaaatttcttcaagcaaaattgttcaatttgaatctgaaat 143  Q
     |||||||||||||||||||||||||||| |||||||||||||    
T  40963023 acaaaatttcttcaagcaaaattgttcaaattgaatctgaaat 40962981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 30501455 - 30501610
Alignment:
Q  1 attcccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatca 100  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |  |||||||| ||        ||||||||||||| ||| | ||     
T  30501455 attcccaaaatttctttcaataattagtggtaacgtacttccccaattcaaaaaaccccaaaccct-atttttttttattgaatccgaaaatcagattcc 30501553  T
Q  101 ccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggt 157  Q
    | ||||||||||||||||||| ||||||| |||||||||||||||||  ||||||||    
T  30501554 ctaaaatttcttcaagcaaaactgttcaaattgaatctgaaatgatggtgggtgggt 30501610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 245
Target Start/End: Original strand, 33112233 - 33112441
Alignment:
Q  37 tcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaat 136  Q
    |||||||||||||||||| |||||||||||||         |||||||  |||  ||||||||   |||||||||| |||||||| | || || ||| ||    
T  33112233 tcttccccaattcaaaaaacttcaaaccctaac-tttttgcattgaatttgaatgtcaaaatccttaaaatttcttgaagcaaaactattgaaattggat 33112331  T
Q  137 ctgaaatgatgagggg-tgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaat 235  Q
    ||||||||||| |||| ||||  || ||| |||| || ||||||||||| ||||| ||||| || ||||| |||||||||||||||||||||||||||||    
T  33112332 ctgaaatgatgggggggtgggaatatgggaaaaaacagttatgaaagtcgagcttcatcttcaaactccaagtttaatggtgatgtgagagtgcttgaat 33112431  T
Q  236 gttgatgtcc 245  Q
    |||| |||||    
T  33112432 gttggtgtcc 33112441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 239
Target Start/End: Original strand, 37886239 - 37886367
Alignment:
Q  111 ttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgttt 210  Q
    ||||||||||| |||| || |||||||| ||||||||||||||||   || ||||||||  |  ||| |||||||||||| ||||| |  ||||||||||    
T  37886239 ttcaagcaaaactgttgaaattgaatctaaaatgatgaggggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctccatgttt 37886338  T
Q  211 aatggtgatgtgagagtgcttgaatgttg 239  Q
    |||||||||||||||||||||||||||||    
T  37886339 aatggtgatgtgagagtgcttgaatgttg 37886367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 23775353 - 23775149
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    ||||||||||| |||||||| ||||||||||||||        ||| |||  ||||  |||||||  ||||||||||| |||||||| | || || ||||    
T  23775353 gttcttccccacttcaaaaaacttcaaaccctaattttttcgtatttaatttgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattga 23775254  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaa 234  Q
    ||||||||||||| ||| ||||  || ||| |||| || ||||||||||| ||||| |||||  ||||| | ||| ||||||| ||||||||||||||||    
T  23775253 atctgaaatgatgggggatgggaatatgggaaaaaacagttatgaaagtcgagcttcatcttcgagctctaagttcaatggtgttgtgagagtgcttgaa 23775154  T
Q  235 tgttg 239  Q
    |||||    
T  23775153 tgttg 23775149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 245
Target Start/End: Original strand, 45897487 - 45897640
Alignment:
Q  93 caaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaag-caattatgaaagtcaagcttt 191  Q
    |||||||  ||||||||||| |||||||| | || || |||||| |||||||||| ||||||||  || ||| ||||  |  |||| ||||||||||||     
T  45897487 caaaatcctcaaaatttcttgaagcaaaactattgaaattgaatatgaaatgatgtggggtgggaatatgggaaaaaaacggttataaaagtcaagcttc 45897586  T
Q  192 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    ||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  45897587 atcttcaagctccaagtttaatggtgttgtgagagtgcttgaatgttggtgtcc 45897640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 49494845 - 49495011
Alignment:
Q  1 attcccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaat-tcaaaatc 99  Q
    |||||||||| ||||| | ||||||||||||||||||||||||||||||||| | | ||||||||||||        ||||||||||||||   ||||||    
T  49494845 attcccaaaaattcttccaataattagtggtaacgttcttccccaattcaaataacctcaaaccctaat--tttttgattgaatccgaaataaaaaaatc 49494942  T
Q  100 accaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaa 169  Q
     | |||||| |||||| ||||| ||||  | ||||||||||||||||| |||||||||||| ||||||||    
T  49494943 ccgaaaattccttcaaacaaaactgttataattgaatctgaaatgatg-ggggtgggtgtatgggcaaaa 49495011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 245
Target Start/End: Original strand, 2975887 - 2976024
Alignment:
Q  107 tttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccat 206  Q
    |||||| |||||||| | || || |||||||||||||||| |||||||||  || ||| |||| || |||| |||||| ||||| ||||| ||| ||||     
T  2975887 tttcttgaagcaaaactattgaaattgaatctgaaatgataaggggtgggaatatgggaaaaa-cagttatcaaagtcgagcttcatcttcaagttccaa 2975985  T
Q  207 gtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  2975986 gtttaatggtgatgtgagattgcttgaatgttgttgtcc 2976024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 239
Target Start/End: Complemental strand, 41945760 - 41945600
Alignment:
Q  78 attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattat 177  Q
    |||||||| ||||  |||||||  |||||||  ||||||||||| |||| || |||||||| |||||| | |||||||   || ||||||||  |  |||    
T  41945760 attgaatctgaaaaccaaaatctgcaaaatta-ttcaagcaaaactgttgaaattgaatctaaaatgaaggggggtggtcatatgggcaaaaagagctat 41945662  T
Q  178 gaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
     |||||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||||    
T  41945661 caaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgttg 41945600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 245
Target Start/End: Original strand, 35861973 - 35862141
Alignment:
Q  78 attgaatccgaaattcaaa-atcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaatta 176  Q
    ||||||||||||||||||| ||| |||||||| |||||||      ||||||  ||||||||||||||||| | |||||  ||| |||||||| ||||||    
T  35861973 attgaatccgaaattcaaagatccccaaaattccttcaagttttggtgttcaggttgaatctgaaatgatgggtggtggacgtatgggcaaaaacaatta 35862072  T
Q  177 tgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    | |||||  |  || ||||| |||||| |||||||||||||||||||||||| |||| ||||| |||||    
T  35862073 tcaaagttgattttcatcttcaagctctatgtttaatggtgatgtgagagtgtttgagtgttggtgtcc 35862141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 224
Target Start/End: Original strand, 24382104 - 24382293
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    |||||||||||||| ||||| ||||||||||||||        |||||||| |||| ||||||||  ||| |||| || |||||||| | || || ||||    
T  24382104 gttcttccccaattaaaaaatcttcaaaccctaattttttcgcattgaatctgaaagtcaaaatcctcaagattttttgaagcaaaactattgaaattga 24382203  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgag 224  Q
    ||||||||||||| ||||||||  || ||  |||| |  ||||||||||  | ||| ||||| |||||||| || |||||||||||||||    
T  24382204 atctgaaatgatggggggtgggaatatggaaaaaaactgttatgaaagtttaacttcatcttgaagctccaagtataatggtgatgtgag 24382293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 32842785 - 32843017
Alignment:
Q  1 attcccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatca 100  Q
    |||||||||||||||| |  |||||| ||  |||||||||||  | ||| |||| ||||||||||||||        |||||||| ||||| |||||||     
T  32842785 attcccaaaatttcttccattaattaatgacaacgttcttccttacttctaaaaacttcaaaccctaatttgttttgattgaatctgaaatccaaaatcc 32842884  T
Q  101 ccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaag 200  Q
    ||||||    ||||||||||||||||||  ||||||  ||||||||| | |||||| ||| |||||| |  | || | |||||| ||||| ||||| ||     
T  32842885 ccaaaaaaaattcaagcaaaattgttcagattgaatgcgaaatgatgggtggtgggcgtatgggcaacacaagttctcaaagtcgagcttcatcttcaaa 32842984  T
Q  201 ctccatgtttaatggtgatgtgagagtgcttga 233  Q
    ||  ||||||||||||||||| ||| |||||||    
T  32842985 ctttatgtttaatggtgatgtcagaatgcttga 32843017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 31885878 - 31886088
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaa 104  Q
    |||||||||| | | ||||| ||||||   |||||||||||||| ||||| ||||||||||||||        |||||||  ||||  |||||||  |||    
T  31885878 ccaaaatttcctccaataataagtggttcagttcttccccaattgaaaaaacttcaaaccctaattttttcgtattgaatttgaaagccaaaatcctcaa 31885977  T
Q  105 aatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctcc 204  Q
    |||||||| |||||| | | || || |||||||| |||||| | ||||||||  || ||| |||| || ||||||||||| ||||| ||||| ||| |||    
T  31885978 aatttcttgaagcaagactattgaaattgaatctaaaatgacg-ggggtgggaatatgggaaaaaacagttatgaaagtcgagcttcatcttcaagatcc 31886076  T
Q  205 atgtttaatggt 216  Q
    | ||||||||||    
T  31886077 aagtttaatggt 31886088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 220
Target Start/End: Original strand, 33851371 - 33851555
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    ||||||||||||||||||||  || ||||||||||        |||||||| ||||  |||||||  ||||||||||| ||| |||| | || || ||||    
T  33851371 gttcttccccaattcaaaaaatttgaaaccctaatttttttgtattgaatctgaaagccaaaatccacaaaatttcttgaagaaaaactattgaaattga 33851470  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 220  Q
    ||||||||||| | |||||||   |  ||| ||||    ||||||||||| ||||| ||||| |||||||| ||||||||||||||    
T  33851471 atctgaaatgaaggggggtggaa-tctgggaaaaaattgttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgatg 33851555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 10380638 - 10380511
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaa-tannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttg 133  Q
    |||||||||||||||||||| ||||||||||||| |        |||||||  ||||  |||||||  ||||||||||| |||||||| | || || |||    
T  10380638 gttcttccccaattcaaaaatcttcaaaccctaatttttttcatattgaatttgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattg 10380539  T
Q  134 aatctgaaatgatgaggggtgggtgtaa 161  Q
    ||||| |||| ||| |||||||||||||    
T  10380538 aatctaaaatcatggggggtgggtgtaa 10380511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 13466655 - 13466609
Alignment:
Q  192 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 238  Q
    ||||| |||||| ||||||||||||||||||||||| ||||||||||    
T  13466655 atcttgaagctctatgtttaatggtgatgtgagagtacttgaatgtt 13466609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 2975819 - 2975883
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    |||||||||||| | ||||| || |||   |||||||||||||||||||| ||||||||||||||    
T  2975819 ccaaaatttcttccaataataagcggtccagttcttccccaattcaaaaaacttcaaaccctaat 2975883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 22218719 - 22218772
Alignment:
Q  192 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    ||||| ||| || |||| |||||||||||||||||| ||||||||||| |||||    
T  22218719 atcttcaagttctatgtctaatggtgatgtgagagtacttgaatgttggtgtcc 22218772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 11021891 - 11022125
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaa 104  Q
    ||||| |||||| | |||||||  ||| |||||||||||||| |||||||  | |||||||||||        |||||||| |||| ||||||||  |||    
T  11021891 ccaaattttcttccaataattaagggtcacgttcttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaatcaaaatctgcaa 11021990  T
Q  105 aatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctcc 204  Q
    ||||  ||||||||||| |||| || |||||||| ||||||||||||||||   || || |||||  |  ||| |||||||||||| ||||| |  ||||    
T  11021991 aattcattcaagcaaaactgttgaaattgaatctaaaatgatgaggggtggtcatatggacaaaaagagctatcaaagtcaagcttcatcttcatcctcc 11022090  T
Q  205 atgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
    |||||||||||||||||||||||||||||||||||    
T  11022091 atgtttaatggtgatgtgagagtgcttgaatgttg 11022125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 228
Target Start/End: Original strand, 11313197 - 11313402
Alignment:
Q  22 aattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaa 121  Q
    ||||||||||||||||||||||||||| ||||| || |||||||| ||        |||||||||||||   | |||  |||||||||||||||||||||    
T  11313197 aattagtggtaacgttcttccccaattaaaaaaactccaaaccctcatttttttttattgaatccgaaaactagaattcccaaaatttcttcaagcaaaa 11313296  T
Q  122 ttgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgt 221  Q
     ||||||| ||||||   || ||||| ||||||||  || ||||||||  | | || |||||||||||||||||| ||||||||||||||||||||||||    
T  11313297 ctgttcaaattgaatagaaactgatg-ggggtgggcatatgggcaaaaagagtcatcaaagtcaagctttatcttcaagctccatgtttaatggtgatgt 11313395  T
Q  222 gagagtg 228  Q
    |||||||    
T  11313396 gagagtg 11313402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 28247908 - 28247674
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaa 104  Q
    ||||| |||||| | |||||||  ||| |||||||||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||    
T  28247908 ccaaattttcttccaataattaagggtcacgttcttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaa 28247809  T
Q  105 aatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctcc 204  Q
    ||||  ||||||||||| |||| || |||||||| |||||||| | |||||   || ||||||||  |  ||| |||||||||||| ||||| |  ||||    
T  28247808 aattcattcaagcaaaactgttgaaattgaatctaaaatgatgggaggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctcc 28247709  T
Q  205 atgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
    |||||||||||||||||||||||||||||||||||    
T  28247708 atgtttaatggtgatgtgagagtgcttgaatgttg 28247674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 102 - 245
Target Start/End: Original strand, 35739 - 35881
Alignment:
Q  102 caaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagc 201  Q
    ||||||||||| |||||||| | || || ||||||||||||||||| || |||||  || ||  |||| |  |||||||||| ||| || ||||| ||||    
T  35739 caaaatttcttgaagcaaaactattgaaattgaatctgaaatgatgtggagtgggaatatggaaaaaa-cggttatgaaagttaagtttcatcttcaagc 35837  T
Q  202 tccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    |||| ||||||||||| ||||||||||||||||||||| |||||    
T  35838 tccaagtttaatggtgttgtgagagtgcttgaatgttggtgtcc 35881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 239
Target Start/End: Complemental strand, 38149696 - 38149535
Alignment:
Q  78 attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattat 177  Q
    |||||||| ||||  |||||||  |||||||  ||||||||||| |||| || |||||||| |||||||| | |||||   || ||||||||  |  |||    
T  38149696 attgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatctaaaatgatgggaggtggtcatatgggcaaaaagagctat 38149597  T
Q  178 gaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
     |||||||||||| ||||| |  ||||||||||||||||||||||||| ||||| |||||||    
T  38149596 caaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagaatgcttaaatgttg 38149535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 10715464 - 10715690
Alignment:
Q  1 attcccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatca 100  Q
    |||||||||||| ||| ||||||||||  |||||||| ||||| |||||||||| ||||||||||||||        ||||||||| |||   | ||||     
T  10715464 attcccaaaattccttccgataattagcagtaacgttgttccc-aattcaaaaaacttcaaaccctaat--ttttttattgaatccaaaaactagaatcc 10715560  T
Q  101 ccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaag 200  Q
    ||||||||||||||||||||| ||||||| ||||||  ||||||||| ||| ||||  || || |||||  | |||| ||||||||||                
T  10715561 ccaaaatttcttcaagcaaaactgttcaaattgaattcgaaatgatgcggg-tgggcatatggacaaaaagagttatcaaagtcaagc------------ 10715647  T
Q  201 ctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtc 244  Q
     |||||||||||||||| ||||||||||||||||||||| ||||    
T  10715648 -tccatgtttaatggtgctgtgagagtgcttgaatgttggtgtc 10715690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 37418469 - 37418263
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnn-attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttg 133  Q
    ||||||| |||||||||||| ||||||||||||||         |||||||  ||||  |||||||  |||| |||||| |||||||| | || || |||    
T  37418469 gttcttcgccaattcaaaaaacttcaaaccctaatttttttcgtattgaatttgaaagccaaaatcctcaaagtttcttgaagcaaaactattgaaattg 37418370  T
Q  134 aatctgaaatgatgaggggtgggtgtaagggcaaaag-caattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttg 232  Q
    |||||||||||||| ||||||||  || ||  ||||  || ||||||||||| || || |||||  |||| || ||||||||||| ||||||||||||||    
T  37418369 aatctgaaatgatggggggtgggaatatggaaaaaaaacagttatgaaagtcgagtttcatcttcgagcttcaagtttaatggtgttgtgagagtgcttg 37418270  T
Q  233 aatgttg 239  Q
    |||||||    
T  37418269 aatgttg 37418263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 42880511 - 42880309
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    |||||||||||||| ||||| ||||||||||||||        ||| |||  ||||  |||||||  ||||||||||| |||||||| | || || ||||    
T  42880511 gttcttccccaatttaaaaaacttcaaaccctaattttttcgtattaaatttgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattga 42880412  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaa 234  Q
    ||| ||||| ||| ||| ||||  || ||| |||| || ||||||||||| ||||| |||||| ||||| | |||||||||||   || |||||||||||    
T  42880411 atcagaaatcatgggggttgggaatatgggaaaaaacagttatgaaagtcgagcttcatctttgagctctaagtttaatggtg--ttgcgagtgcttgaa 42880314  T
Q  235 tgttg 239  Q
    |||||    
T  42880313 tgttg 42880309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 363418 - 363354
Alignment:
Q  6 caaaatttctttcgataattagtggtaacgttcttccccaattca-aaaagcttcaaaccctaat 69  Q
    ||||||||||| | |||||||||||||||||||||| |||||||| |||| ||||||||||||||    
T  363418 caaaatttcttccaataattagtggtaacgttcttctccaattcaaaaaaacttcaaaccctaat 363354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 7745000 - 7744932
Alignment:
Q  1 attcccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    |||||||||| ||||| | ||||||||||||||||||||||||||||| ||| | | ||||||||||||    
T  7745000 attcccaaaaattcttccaataattagtggtaacgttcttccccaattgaaataacctcaaaccctaat 7744932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 40150664 - 40150825
Alignment:
Q  36 ttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaag-caaaattgttcaatttga 134  Q
    ||||||||| |||| |||| |||||||||||| |        ||||||||| |||| |||||||  ||||||||||||||  ||||||||||||  ||||    
T  40150664 ttcttcccctattctaaaaacttcaaaccctattttgttttcattgaatccaaaatccaaaatcttcaaaatttcttcaaatcaaaattgttcagattga 40150763  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctt 196  Q
    |||| |||||||| | |||||  ||| |||||||| ||||| | ||||||||| || |||||    
T  40150764 atctaaaatgatgggtggtggccgtatgggcaaaaacaattctcaaagtcaagtttcatctt 40150825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 40152246 - 40152135
Alignment:
Q  36 ttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaa 135  Q
    |||||||||||||| |||| ||| ||||||||||        |||||||||||||| |||||||   ||||||||||||| ||||||||||||  |||||    
T  40152246 ttcttccccaattctaaaaacttaaaaccctaatttgatttgattgaatccgaaatccaaaatcctgaaaatttcttcaaccaaaattgttcagattgaa 40152147  T
Q  136 tctgaaatgatg 147  Q
    ||  ||||||||    
T  40152146 tccaaaatgatg 40152135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 220
Target Start/End: Complemental strand, 42003108 - 42002990
Alignment:
Q  102 caaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagc 201  Q
    ||||||||||| |||||||| | || || |  |||||||||||||  ||||||||  || ||| |||| |  ||||||||||| ||||| ||||| ||||    
T  42003108 caaaatttcttgaagcaaaactattgaaataaaatctgaaatgatagggggtgggaatatgggaaaaaactgttatgaaagtcgagcttcatcttcaagc 42003009  T
Q  202 tccatgtttaatggtgatg 220  Q
    |||| ||||||||||||||    
T  42003008 tccaagtttaatggtgatg 42002990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 17948669 - 17948601
Alignment:
Q  1 attcccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    |||||||||| ||||| | |||||| |||||||||||||||||||||| ||| | | ||||||||||||    
T  17948669 attcccaaaaattcttccaataattggtggtaacgttcttccccaattgaaataacctcaaaccctaat 17948601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 237
Target Start/End: Original strand, 38177023 - 38177225
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    |||||||||||||||||||| ||||||||||||||        |||||||  ||||  |||||||  ||||||||||| |||||||| | || || ||||    
T  38177023 gttcttccccaattcaaaaaacttcaaaccctaattttttcgtattgaatttgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattga 38177122  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaa 234  Q
    ||||||||||||| |||||||   || ||| ||||  | ||||||||||| ||||| |||||  ||||||| ||||||||||| ||||||||||||||||    
T  38177123 atctgaaatgatggggggtggaaatatgggaaaaaatagttatgaaagtcgagcttcatcttcgagctccaagtttaatggtgttgtgagagtgcttgaa 38177222  T
Q  235 tgt 237  Q
    |||    
T  38177223 tgt 38177225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 237
Target Start/End: Original strand, 38204247 - 38204449
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    |||||||||||||||||||| ||||||||||||||        |||||||  ||||  |||||||  ||||||||||| |||||||| | || || ||||    
T  38204247 gttcttccccaattcaaaaaacttcaaaccctaattttttcgtattgaatttgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattga 38204346  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaa 234  Q
    ||||||||||||| |||||||   || ||| ||||  | ||||||||||| ||||| |||||  ||||||| ||||||||||| ||||||||||||||||    
T  38204347 atctgaaatgatggggggtggaaatatgggaaaaaatagttatgaaagtcgagcttcatcttcgagctccaagtttaatggtgttgtgagagtgcttgaa 38204446  T
Q  235 tgt 237  Q
    |||    
T  38204447 tgt 38204449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 92 - 245
Target Start/End: Original strand, 35291492 - 35291644
Alignment:
Q  92 tcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagcttt 191  Q
    ||||||||  ||||||||||| |||||||| | || || ||| ||||||||||||| ||||||||  || ||| |||| || |||||||||||||| ||     
T  35291492 tcaaaatcctcaaaatttcttgaagcaaaactattgaaattggatctgaaatgatg-ggggtgggaatatgggaaaaaacagttatgaaagtcaagtttc 35291590  T
Q  192 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  35291591 atcttcaagctccaagtttaatggtgatgtgatagtgcttgaatgttggtgtcc 35291644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 92 - 245
Target Start/End: Original strand, 43317176 - 43317329
Alignment:
Q  92 tcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagcttt 191  Q
    ||||||||  ||||||||||| |||||||| |  | || ||| ||||||||||||| ||||||||  || ||  |||| || ||||||||||| |||||     
T  43317176 tcaaaatcctcaaaatttcttgaagcaaaactagtgaaattggatctgaaatgatggggggtgggaatatggaaaaaaacagttatgaaagtcgagcttc 43317275  T
Q  192 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||||| |||||    
T  43317276 atcttcaaactccaagtttaatggtgatgtgagagtgcttgaatgttggtgtcc 43317329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 245
Target Start/End: Original strand, 18727012 - 18727164
Alignment:
Q  93 caaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagcttta 192  Q
    |||||||  ||||||||||| |||||| | | || || ||||||||||||||||| ||||||||  ||  || |||| |  |||||||||| |||||| |    
T  18727012 caaaatcctcaaaatttcttgaagcaagactattgaaattgaatctgaaatgatgtggggtgggaatataggaaaaaacggttatgaaagtaaagcttca 18727111  T
Q  193 tctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  18727112 tcttcaagctccaagtttaatggtgttgtgagagtgcttgaatgttggtgtcc 18727164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 239
Target Start/End: Original strand, 32836267 - 32836470
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    |||||||||||||||||||| ||||||||||||||        |||||||   |||  |||||||  |||||  | || |||||||| | || || ||||    
T  32836267 gttcttccccaattcaaaaaacttcaaaccctaattttttcgtattgaatttaaaagccaaaatcctcaaaaaattttgaagcaaaactattgaaattga 32836366  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaa 234  Q
    ||||||||||||| ||||||||  || | | |||| || ||||||||||| ||||| |||||  ||||||| ||||||||||| ||||||||||||||||    
T  32836367 atctgaaatgatg-ggggtgggaatatgtgaaaaaacagttatgaaagtcgagcttcatcttcgagctccaagtttaatggtgttgtgagagtgcttgaa 32836465  T
Q  235 tgttg 239  Q
    |||||    
T  32836466 tgttg 32836470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 245
Target Start/End: Complemental strand, 32089625 - 32089411
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnn-attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttg 133  Q
    ||||| |||||||||||||| ||||||||||||||         | |||||| ||||  |||||||  ||||||||||| |||||||| | || || |||    
T  32089625 gttctgccccaattcaaaaaacttcaaaccctaatttttttcgtagtgaatctgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattg 32089526  T
Q  134 aat-ctg--aaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgct 230  Q
    ||| ||   |||||||| ||||||||  || ||| |||| |  ||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||    
T  32089525 aatacttcaaaatgatgtggggtgggaatatgggaaaaaacggttatgaaagtcaagcttcatcttcaagctccaagtttaatggtgttgtgagagtgct 32089426  T
Q  231 tgaatgttgatgtcc 245  Q
    ||||||||| |||||    
T  32089425 tgaatgttggtgtcc 32089411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 245
Target Start/End: Complemental strand, 40330146 - 40330004
Alignment:
Q  103 aaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagct 202  Q
    |||||||||| |||||||| | || || |||| |||||||||||| |||||||   || ||| ||||  | ||||||||||| ||||| ||||| ||  |    
T  40330146 aaaatttcttgaagcaaaactattgaaattgattctgaaatgatggggggtggaaatatgggaaaaaatagttatgaaagtcgagcttcatcttcaattt 40330047  T
Q  203 ccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    ||| ||||||||||||||||||||||||||||||||| |||||    
T  40330046 ccaagtttaatggtgatgtgagagtgcttgaatgttggtgtcc 40330004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 245
Target Start/End: Complemental strand, 18341745 - 18341593
Alignment:
Q  93 caaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagcttta 192  Q
    ||||||| ||||||||||||||| ||||||||||||  ||||||||||||||||| | |||||  ||| |||||||| || || | ||| |  ||||| |    
T  18341745 caaaatccccaaaatttcttcaatcaaaattgttcagattgaatctgaaatgatgggtggtggtcgtatgggcaaaaacagttctcaaacttgagcttca 18341646  T
Q  193 tctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    || | || ||| |||||||| |||||||| ||| ||||||||||||| |||||    
T  18341645 tcctcaaactctatgtttaacggtgatgtaagaatgcttgaatgttggtgtcc 18341593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 42619647 - 42619875
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaa 104  Q
    ||||| |||||| | |||||||  ||| |||||||||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||    
T  42619647 ccaaattttcttccaataattaagggtcacgttcttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaa 42619746  T
Q  105 aatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctcc 204  Q
    ||||  ||||||||||| |||| || |||||||| |||||||| |||||||   || ||| |   ||   ||  |||||||||||| ||||| |  ||||    
T  42619747 aattcattcaagcaaaactgttgaaattgaatctaaaatgatggggggtggtcatatgggga---gc---taccaaagtcaagcttcatcttcatcctcc 42619840  T
Q  205 atgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
    |||||||||||||||||||||||||||||||||||    
T  42619841 atgtttaatggtgatgtgagagtgcttgaatgttg 42619875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 1344542 - 1344478
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    |||||||||||| | |||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  1344542 ccaaaatttcttccaataattggtggtaacgttcttccccaattcaaaaaacttcaaaccctaat 1344478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 6116556 - 6116465
Alignment:
Q  78 attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaa 169  Q
    |||||||  ||||| ||||||| ||||||||||||||  ||||||||||||| ||||||| ||||||||| | | ||||||||  |||||||    
T  6116556 attgaatatgaaatccaaaatccccaaaatttcttcattcaaaattgttcaaattgaatccgaaatgatgggtgatgggtgtataggcaaaa 6116465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 24497812 - 24497749
Alignment:
Q  1 attcccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaacc 64  Q
    |||||||||||||||| | ||||| | || |||||||||||||||||||||||| |||||||||    
T  24497812 attcccaaaatttcttccaataatcaatgataacgttcttccccaattcaaaaaccttcaaacc 24497749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 1343550 - 1343614
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    |||||||||||| | ||| |||||||||||||| |||||||||| ||||| || |||||||||||    
T  1343550 ccaaaatttcttccaatagttagtggtaacgtttttccccaatttaaaaaactccaaaccctaat 1343614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 27350260 - 27350095
Alignment:
Q  1 attcccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaa-tc 99  Q
    |||||||||| ||||||| |||||||||| |||||||| ||||||||| ||| | | |||||||||| |        ||||||||| ||||  |||| ||    
T  27350260 attcccaaaaattctttcaataattagtg-taacgttcatccccaattgaaataacctcaaaccctatt--ttttttattgaatccaaaataaaaaaatc 27350164  T
Q  100 accaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaa 169  Q
     ||||||||||||||| ||||| ||||  | ||||||  ||||||||| |||||||||||| ||||||||    
T  27350163 cccaaaatttcttcaaacaaaactgttgtaattgaataagaaatgatg-ggggtgggtgtatgggcaaaa 27350095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 217
Target Start/End: Complemental strand, 35400350 - 35400226
Alignment:
Q  93 caaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagcttta 192  Q
    |||||||  ||||||||||| |||||||| | || || ||||||||||||||||| ||||||||  || ||| ||||    || ||||||||||| || |    
T  35400350 caaaatcctcaaaatttcttgaagcaaaactattgaaattgaatctgaaatgatggggggtgggaatatgggaaaaaaaggttttgaaagtcaagtttca 35400251  T
Q  193 tctttaagctccatgtttaatggtg 217  Q
    |||| || ||||| |||||||||||    
T  35400250 tcttcaaactccaagtttaatggtg 35400226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 33257309 - 33257262
Alignment:
Q  198 aagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    |||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  33257309 aagctccaagtttaatggtgttgtgagagtgcttgaatgttggtgtcc 33257262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 27077010 - 27076963
Alignment:
Q  192 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
    ||||| |||||| || |||||||||||||||||||| |||||||||||    
T  27077010 atcttcaagctctatttttaatggtgatgtgagagtacttgaatgttg 27076963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 27077160 - 27077123
Alignment:
Q  32 aacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  27077160 aacgttcttccccaattcaaaaaacttcaaaacctaat 27077123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 39922740 - 39922506
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaa 104  Q
    ||||| |||||| | |||||||  ||| |||||||||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||    
T  39922740 ccaaattttcttccaataattaagggtcacgttcttccccaaatcaaaaaattacaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaa 39922641  T
Q  105 aatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctcc 204  Q
    ||||  ||||||||||| |||| || |||||||| |||||||| | |||||   || ||||||||| |  ||| |||||||||||| ||||| |  ||||    
T  39922640 aattcattcaagcaaaactgttgaaattgaatctaaaatgatgggaggtggtcatatgggcaaaaggagctatcaaagtcaagcttcatcttcatcctcc 39922541  T
Q  205 atgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
    |||||||||||||||||||||||||||||||||||    
T  39922540 atgtttaatggtgatgtgagagtgcttgaatgttg 39922506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 39084885 - 39084651
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaa 104  Q
    ||||| |||||| | |||||||  ||| |||||||||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||    
T  39084885 ccaaattttcttccaataattaagggtcacgttcttccccaaatcaaaaaattacaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaa 39084786  T
Q  105 aatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctcc 204  Q
    ||||  ||||||||||| |||| || |||||||| |||||||| | |||||   || ||||||||  |  ||| |||||||||||| ||||| |  ||||    
T  39084785 aattcattcaagcaaaactgttgaaattgaatctaaaatgatgggaggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctcc 39084686  T
Q  205 atgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
    |||||||||||||||||||||||||||||||||||    
T  39084685 atgtttaatggtgatgtgagagtgcttgaatgttg 39084651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 39190552 - 39190318
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaa 104  Q
    ||||| |||||| | |||||||  ||| |||||||||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||    
T  39190552 ccaaattttcttccaataattaagggtcacgttcttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaa 39190453  T
Q  105 aatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctcc 204  Q
    ||||  ||||||||||| | || || |||||||| |||||||| | |||||   || ||||||||  |  ||| |||||||||||| ||||| |  ||||    
T  39190452 aattcattcaagcaaaactattgaaattgaatctaaaatgatgggaggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctcc 39190353  T
Q  205 atgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
    |||||||||||||||||||||||||||||||||||    
T  39190352 atgtttaatggtgatgtgagagtgcttgaatgttg 39190318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 42879642 - 42879876
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaa 104  Q
    ||||| |||||| | |||||||  ||| |||||||||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||    
T  42879642 ccaaattttcttccaataattaagggtcacgttcttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaa 42879741  T
Q  105 aatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctcc 204  Q
    ||||  ||||||||||| |||| || |||||||| |||||||| | |||||   || ||||||||  |  ||| |||||||||||| ||||| |  ||||    
T  42879742 aattcattcaagcaaaactgttgaaattgaatctaaaatgatgggaggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctcc 42879841  T
Q  205 atgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
    |||||||||||||||||||||||| ||||||||||    
T  42879842 atgtttaatggtgatgtgagagtgattgaatgttg 42879876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 78 - 239
Target Start/End: Original strand, 43778818 - 43778979
Alignment:
Q  78 attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattat 177  Q
    |||||||| ||||  |||||||  |||||||  ||||||||||| |||| || |||||||| |||||||| | |||||   || ||||||||| |  |||    
T  43778818 attgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatctaaaatgatgggaggtggtcatatgggcaaaaggagctat 43778917  T
Q  178 gaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
     |||||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||||    
T  43778918 caaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgttg 43778979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 5485785 - 5485551
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaa 104  Q
    ||||| |||||| | |||||||  ||| |||||||||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||    
T  5485785 ccaaattttcttccaataattaagggtcacgttcttccccaaatcaaaaaattacaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaa 5485686  T
Q  105 aatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctcc 204  Q
    ||||  ||||||||||| |||| || |||||||| |||||||| | || ||   || ||||||||  |  ||| ||||||||||||  |||| |  ||||    
T  5485685 aattcattcaagcaaaaatgttgaaattgaatctaaaatgatgggaggcggtcatatgggcaaaaagagctatcaaagtcaagcttcgtcttcatcctcc 5485586  T
Q  205 atgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
    |||||||||||||||||||||||||||||||||||    
T  5485585 atgtttaatggtgatgtgagagtgcttgaatgttg 5485551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 245
Target Start/End: Complemental strand, 4520125 - 4519959
Alignment:
Q  78 attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattat 177  Q
    |||||||| ||||  |||||||  ||||||||||| |||||||| | || ||  ||||| |||||||||| |||||||   || ||| |||| || ||||    
T  4520125 attgaatctgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaaatgaatatgaaatgatg-ggggtggaaatatgggaaaaaacagttat 4520027  T
Q  178 gaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    ||||||| ||||| ||||| |||||||| ||||||||||||||| | ||||||||||||||| |||||    
T  4520026 gaaagtcgagcttcatcttcaagctccaagtttaatggtgatgtcaaagtgcttgaatgttggtgtcc 4519959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 44993167 - 44993399
Alignment:
Q  6 caaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaa 105  Q
    |||| |||||| | |||||||  ||| |||||||||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  ||||    
T  44993167 caaattttcttccaataattaagggtcacgttcttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaaa 44993266  T
Q  106 atttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctcca 205  Q
    |||  ||||||||||| |||| || |||||||| |||||||| | |||||   || ||||||||  |  ||| ||||||||| || ||||| |  |||||    
T  44993267 attcattcaagcaaaactgttgaaattgaatctaaaatgatgggaggtggtcatatgggcaaaaagagctatcaaagtcaagtttcatcttcatcctcca 44993366  T
Q  206 tgtttaatggtgatgtgagagtgcttgaatgtt 238  Q
    |||||||||||||||||| ||||||||||||||    
T  44993367 tgtttaatggtgatgtgaaagtgcttgaatgtt 44993399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 13438207 - 13438275
Alignment:
Q  1 attcccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  13438207 attcccaaaatttcttccaataattagtggtaactttcttccccaattcaaaaaacttcaaaccctaat 13438275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 39294617 - 39294553
Alignment:
Q  4 cccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaa 68  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39294617 cccaaaatttcttccaataattagtggtaacgttcttccccaattcaaaaaacttcaaaccctaa 39294553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 220
Target Start/End: Original strand, 44556998 - 44557183
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    |||||||||||||||||||| ||||||||||||||        ||||||||  |||  |||||||  ||||| ||||| |||||||| | || || |  |    
T  44556998 gttcttccccaattcaaaaaacttcaaaccctaattttttcgtattgaatcttaaaaccaaaatcctcaaaaattcttgaagcaaaactattgaaataaa 44557097  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 220  Q
    |||  |||||||||||||||||  || ||| |||| |  ||||||||||| ||||| |||||  ||||||| ||||||||||||||    
T  44557098 atccaaaatgatgaggggtgggaatatgggaaaaaactgttatgaaagtcgagcttcatcttctagctccaagtttaatggtgatg 44557183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 27626429 - 27626246
Alignment:
Q  36 ttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaa 135  Q
    ||||||||||||||||||| ||||||||||||||        ||||||||  |||  |||||||  ||||||||||| |||||||| | || || |  ||    
T  27626429 ttcttccccaattcaaaaaacttcaaaccctaattttttcgtattgaatcttaaaaccaaaatcctcaaaatttcttgaagcaaaactattgaaataaaa 27626330  T
Q  136 tctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgat 219  Q
    ||  |||||||| ||||||||  || ||  |||| |  ||||||||||| ||||| ||||| |||||||| |||||||||||||    
T  27626329 tccaaaatgatggggggtgggaatatggcaaaaaactgttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgat 27626246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 239
Target Start/End: Complemental strand, 32653275 - 32653130
Alignment:
Q  93 caaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagcttta 192  Q
    |||||||  |||||||  ||||||||||| |||| || |||||||| |||||| | |||||||   || ||||||||  |  ||| |||||||||||| |    
T  32653275 caaaatctgcaaaattcattcaagcaaaactgttgaaattgaatctaaaatgaag-ggggtggtcatatgggcaaaaagagctatcaaagtcaagcttca 32653177  T
Q  193 tctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
    |||| |  || ||||||||||||||||||||||||||| ||||||||    
T  32653176 tcttcatccttcatgtttaatggtgatgtgagagtgctcgaatgttg 32653130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 213
Target Start/End: Complemental strand, 35997462 - 35997284
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    |||||||||||||| ||||| ||| |||||||||         |||||||| ||||  |||||||  ||||||||||| |||||||| | || || ||||    
T  35997462 gttcttccccaatttaaaaaacttgaaaccctaaatttttcgtattgaatctgaaagccaaaatccacaaaatttcttgaagcaaaactattgaaattga 35997363  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaat 213  Q
    ||||||||||||| ||||||||  || ||| |||| |  ||| ||||||| ||||| ||||| ||||| || |||||||    
T  35997362 atctgaaatgatggggggtgggaatatgggaaaaaactgttaagaaagtcgagcttcatcttcaagctgcaagtttaat 35997284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 10544605 - 10544498
Alignment:
Q  131 ttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgct 230  Q
    |||||| |||||||||| | |||||| ||| |||||||| || || | |||||| | ||| ||||| |||||| ||||||||||||||||| ||| || |    
T  10544605 ttgaatatgaaatgatgggtggtgggcgtatgggcaaaaacagttctcaaagtcgaacttcatcttcaagctctatgtttaatggtgatgtcagaatgtt 10544506  T
Q  231 tgaatgtt 238  Q
    ||||||||    
T  10544505 tgaatgtt 10544498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 25994841 - 25994708
Alignment:
Q  6 caaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaa----tannnnnnnattgaatccgaaattcaaaatcac 101  Q
    ||||||||||| | ||||||||||||||| ||||||| ||||||||||| || |||||||| |    |        |||||||||||||  || |||| |    
T  25994841 caaaatttcttccaataattagtggtaacattcttcctcaattcaaaaaactccaaaccctgatttttttttttttattgaatccgaaaaccagaatccc 25994742  T
Q  102 caaaatttcttcaagcaaaattgttcaatttgaa 135  Q
    |||||||||||||||||||| ||||||| |||||    
T  25994741 caaaatttcttcaagcaaaactgttcaaattgaa 25994708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 225
Target Start/End: Original strand, 51041126 - 51041314
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    |||||||||| ||||| ||| |||||||||||||         |||||||| |||| ||||||||  |||||    || |||||||| | || || ||||    
T  51041126 gttcttcccctattcataaatcttcaaaccctaactttttcgcattgaatctgaaagtcaaaatcctcaaaaaaatttgaagcaaaactattgaaattga 51041225  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgaga 225  Q
    || ||||||||||  |||||||  || ||| |||| || ||||||||||| || || ||||| |||||||| |||||||||||||||||||    
T  51041226 atatgaaatgatg--gggtgggaatatgggaaaaaacagttatgaaagtcgagtttcatcttcaagctccaagtttaatggtgatgtgaga 51041314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 230805 - 230869
Alignment:
Q  4 cccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    ||||||||||||| | ||||||||||||||||||||| || ||||||||||  |||||||||||||    
T  230805 cccaaaatttcttccaataattagtggtaacgttctt-cctaattcaaaaaatttcaaaccctaat 230869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 13450048 - 13449984
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    |||||||||||| | ||||||| |  |||| ||||||||||||||||||| ||||||||||||||    
T  13450048 ccaaaatttcttccaataattatttttaacattcttccccaattcaaaaaacttcaaaccctaat 13449984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 27385980 - 27385940
Alignment:
Q  205 atgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  27385980 atgtttaatggtgatgtgagagtacttgaatgttggtgtcc 27385940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 245
Target Start/End: Original strand, 28101029 - 28101179
Alignment:
Q  94 aaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttat 193  Q
    |||||| |||||||||||||||||     ||||||  ||||||||||||||||| | |||||   ||  |||||||  | |||| |||| | | ||| ||    
T  28101029 aaaatctccaaaatttcttcaagctttggtgttcaggttgaatctgaaatgatgggtggtggca-tataggcaaaaatagttatcaaagacgatcttcat 28101127  T
Q  194 ctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    ||| |||||| |||| ||||||||||||||| |||||||||| ||| |||||    
T  28101128 cttcaagctctatgtataatggtgatgtgagggtgcttgaatattggtgtcc 28101179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 40019514 - 40019748
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaa 104  Q
    ||||| |||||| | |||||||  ||| |||||||||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||    
T  40019514 ccaaattttcttccaataattaagggtcacgttcttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaa 40019613  T
Q  105 aatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctcc 204  Q
    ||||  ||||||||||| |||| || |||||||| |||||||| | |||||   || ||||||||  |  ||| |||||||||||| ||||| |  ||||    
T  40019614 aattcattcaagcaaaactgttgaaattgaatctaaaatgatgggaggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctcc 40019713  T
Q  205 atgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
    |||||||||||||||||||||||||||||||||||    
T  40019714 atgtttaatggtgatgtgagagtgcttgaatgttg 40019748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 35 - 245
Target Start/End: Complemental strand, 9876262 - 9876053
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    ||||| |||||||||||||| ||||||||||||||        | |||||| ||||  |||||||  |||||||| || |||||||| | || || ||||    
T  9876262 gttctgccccaattcaaaaaacttcaaaccctaattttttcgtagtgaatctgaaagccaaaatcctcaaaattttttgaagcaaaactattgaaattga 9876163  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaa 234  Q
    ||||||||||||| ||||||||  || ||| |||| |  ||||||||||||||||| ||||| | |||||| ||||||||||  ||||||| ||||||||    
T  9876162 atctgaaatgatg-ggggtgggaatatgggaaaaaactgttatgaaagtcaagcttcatcttcaggctccaagtttaatggtattgtgagaatgcttgaa 9876064  T
Q  235 tgttgatgtcc 245  Q
    ||||| |||||    
T  9876063 tgttggtgtcc 9876053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 147
Target Start/End: Original strand, 25356691 - 25356834
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaa-tannnnnnnattgaatccgaaattcaaaatcacca 103  Q
    |||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||| |        |||||||| ||||| ||||||| |||    
T  25356691 ccaaaatttcttccaataataagtggtaacgttcttccccaattcaaaaaacttcaaaccctaatttcttttttattgaatctgaaatccaaaatcccca 25356790  T
Q  104 aaatttcttcaagcaaaattgttcaatttgaatctgaaatgatg 147  Q
    ||||||||| |||||||| | || || ||||||| |||||||||    
T  25356791 aaatttcttgaagcaaaactattgaaattgaatcagaaatgatg 25356834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 225
Target Start/End: Original strand, 461567 - 461756
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    |||||||||||||||||||| |||||||||||||         |||||||| |||| ||||||||  |||||||| || || ||||| | || || ||||    
T  461567 gttcttccccaattcaaaaatcttcaaaccctaactttttcgcattgaatctgaaagtcaaaatcctcaaaattt-ttgaaacaaaactattgaaattga 461665  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgaga 225  Q
    ||||||||||||| || |||||  || ||| | || || ||||||||||| ||||| ||||| |||||||| |||||||||||||||||||    
T  461666 atctgaaatgatggggtgtgggaatatgggaagaaacagttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgatgtgaga 461756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 225
Target Start/End: Original strand, 33159047 - 33159236
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    |||||||||||||||||||| |||||||||||||         |||||||| |||| ||||||||  |||| ||| || |||||||| | || || ||||    
T  33159047 gttcttccccaattcaaaaatcttcaaaccctaactttttcgcattgaatctgaaagtcaaaatcctcaaatttttttgaagcaaaactattgaaattga 33159146  T
Q  135 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgaga 225  Q
    ||||||||||||  ||||||||  || ||  ||||||| ||||||||||| ||||| ||||| || ||||| |||||||||||||||||||    
T  33159147 atctgaaatgatagggggtgggaatatgga-aaaagcagttatgaaagtcgagcttcatcttcaaactccaagtttaatggtgatgtgaga 33159236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 245
Target Start/End: Original strand, 33748793 - 33748935
Alignment:
Q  102 caaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagc 201  Q
    ||||||||||| |||||||| | || || ||||||||||||||||| ||||||||  || ||  |||| |  |||||||||||||| || ||||| ||||    
T  33748793 caaaatttcttgaagcaaaactattgaaattgaatctgaaatgatgtggggtgggaatatggaaaaaa-cggttatgaaagtcaagtttcatcttcaagc 33748891  T
Q  202 tccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    |||| ||||||| ||| ||||||||||||||||||||| |||||    
T  33748892 tccaagtttaatagtgttgtgagagtgcttgaatgttggtgtcc 33748935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 33369120 - 33369362
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnn--attgaatccgaaattcaaaatcacc 102  Q
    |||||| ||||| | ||||| ||||||   |||||||||||||||||||| |||||||||| |||          |||||||| ||||  ||||||  ||    
T  33369120 ccaaaacttcttccaataataagtggtccagttcttccccaattcaaaaaacttcaaacccgaattttttttcttattgaatctgaaagccaaaattccc 33369219  T
Q  103 aaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagct 202  Q
    |||| ||||| |||||||| | || || ||||||||||||||||| |  |||||  || | | |||| |  ||||||||||  ||||||||||| |||||    
T  33369220 aaaacttcttgaagcaaaactattgaaattgaatctgaaatgatgggacgtgggaatatgagaaaaaacggttatgaaagttgagctttatcttcaagct 33369319  T
Q  203 ccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    |||  ||||||||||||||||||| |||||||||||| |||||    
T  33369320 ccaaatttaatggtgatgtgagagcgcttgaatgttggtgtcc 33369362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 10269271 - 10269206
Alignment:
Q  4 cccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  10269271 cccaaaatttcttccaataattagtggtaacgttcttccccaattcaaaaaacttcaaacgctaat 10269206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 11031763 - 11031828
Alignment:
Q  4 cccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    ||||||||||||| | |||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  11031763 cccaaaatttcttccaataattagtggtaacgttcttccctaattcaaaaaacttcaaaccctaat 11031828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 25371781 - 25371636
Alignment:
Q  78 attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattat 177  Q
    |||||||| ||||| |||||||   ||||||| ||  ||||||| | || || ||||||| ||||||||||||||||||  || ||| |||| || ||||    
T  25371781 attgaatctgaaatccaaaatccaaaaaatttattgcagcaaaactattgaaattgaatccgaaatgatgaggggtgggcatatgggaaaaaacagttat 25371682  T
Q  178 gaaagtcaagctttatctttaagctccatgtttaatggtgatgtga 223  Q
    ||| ||| ||||| ||||| |||||||| |||||||||||||||||    
T  25371681 gaatgtcgagcttcatcttcaagctccaagtttaatggtgatgtga 25371636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 38881848 - 38881992
Alignment:
Q  93 caaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgagg-ggtgggtgtaagggcaaaagcaattatgaaagtcaagcttt 191  Q
    |||||||  ||||||||||| |||||||| | || || ||||||||||||||||| || |||| |  || ||| |||| |||||||||||||| |||||     
T  38881848 caaaatcctcaaaatttcttgaagcaaaactattgaaattgaatctgaaatgatggggaggtgagaatatgggaaaaaacaattatgaaagtcgagcttc 38881947  T
Q  192 atctttaagctccatgtttaatggtgatg--tgagagtgcttgaa 234  Q
    ||||| |||||||| |||||| |||||||  ||||||||||||||    
T  38881948 atcttcaagctccaagtttaacggtgatgtatgagagtgcttgaa 38881992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 220
Target Start/End: Complemental strand, 1322015 - 1321829
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnn-attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttg 133  Q
    |||||||||||||||||||| ||| ||||||||||         |||||||  ||||  |||||||  ||||||||||| |||||||| | || || |||    
T  1322015 gttcttccccaattcaaaaaacttgaaaccctaatttttttcgtattgaatatgaaagccaaaatccacaaaatttcttgaagcaaaactattgaaattg 1321916  T
Q  134 aatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 220  Q
    |||||||||||| | ||||||||  || ||| ||||    ||||||||||| ||||| ||||| |||||||| ||||||||||||||    
T  1321915 aatctgaaatgaaggggggtgggaatatgggaaaaaattgttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgatg 1321829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 239
Target Start/End: Original strand, 28432650 - 28432810
Alignment:
Q  78 attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattat 177  Q
    |||||||| ||||  |||||||  |||||||  ||||||||||  |||| || |||||||| |||||||| |||||||   || ||||||||  |  ||     
T  28432650 attgaatctgaaaaccaaaatctacaaaattcattcaagcaaatctgttgaaattgaatctaaaatgatg-ggggtggtcatatgggcaaaaagagctac 28432748  T
Q  178 gaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
     ||||||||| || ||||| |  |||||||||||||||||||||||||||||||||||||||    
T  28432749 caaagtcaagtttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgttg 28432810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 37525333 - 37525418
Alignment:
Q  140 aaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgaga 225  Q
    |||||||| ||||||||  || ||| |||| || ||||||||||| ||||| ||||| |||||||| |||||||||||||||||||    
T  37525333 aaatgatggggggtgggaatatgggaaaaaacagttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgatgtgaga 37525418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 8655752 - 8655640
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 134  Q
    |||||||||||||||||||| ||| ||||||||||        |||||||| ||||  |||||||  ||||||||||| |||||||| | || || ||||    
T  8655752 gttcttccccaattcaaaaaacttgaaaccctaattttttcgtattgaatctgaaagccaaaatccacaaaatttcttgaagcaaaactattgaaattga 8655653  T
Q  135 atctgaaatgatg 147  Q
    |||||||||||||    
T  8655652 atctgaaatgatg 8655640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 190
Target Start/End: Original strand, 42895161 - 42895317
Alignment:
Q  35 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnn-attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttg 133  Q
    |||||||||||||||||||| ||||||||||||||         |||||||  ||||  |||||||  ||||||||||| |||||||| | || || |||    
T  42895161 gttcttccccaattcaaaaaacttcaaaccctaatttttttcgtattgaatttgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattg 42895260  T
Q  134 aatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctt 190  Q
    |||||||||||||| ||||||||  || ||| |||| || | ||||||||| |||||    
T  42895261 aatctgaaatgatggggggtgggaatatgggaaaaaacagtcatgaaagtcgagctt 42895317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 9186363 - 9186302
Alignment:
Q  8 aaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    ||||||||| | |||||||||| |||||||||| ||||||||||||| ||| ||||||||||    
T  9186363 aaatttcttccaataattagtgataacgttcttacccaattcaaaaaactttaaaccctaat 9186302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 11719994 - 11720047
Alignment:
Q  192 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    ||||| |||||| ||| ||||||||||||||||||| ||||||||||| |||||    
T  11719994 atcttcaagctctatgcttaatggtgatgtgagagtacttgaatgttggtgtcc 11720047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 12515435 - 12515499
Alignment:
Q  4 cccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    ||||||||||||| |  ||||||| | |||||||||||||| ||||||||| ||||||||||||||    
T  12515435 cccaaaatttcttccc-taattagcgataacgttcttccccgattcaaaaaacttcaaaccctaat 12515499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 31823028 - 31822975
Alignment:
Q  192 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    ||||| || ||||| ||||||||||| ||||||||||||||||||||| |||||    
T  31823028 atcttcaaactccaagtttaatggtgttgtgagagtgcttgaatgttggtgtcc 31822975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 32823863 - 32823816
Alignment:
Q  173 attatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 220  Q
    |||||||||||| ||||||||||| ||||| || ||||||||||||||    
T  32823863 attatgaaagtcgagctttatcttcaagcttcaagtttaatggtgatg 32823816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 44620318 - 44620244
Alignment:
Q  94 aaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaa 169  Q
    |||||| |||||||| |||||| ||||| ||||  | ||||||||||||||||| ||||||||||||  |||||||    
T  44620318 aaaatctccaaaattccttcaaacaaaactgttgtaattgaatctgaaatgatg-ggggtgggtgtatcggcaaaa 44620244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 10268162 - 10268223
Alignment:
Q  8 aaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    ||||||||| | ||||||||| ||||| ||||||||||||  ||| | ||||||||||||||    
T  10268162 aaatttcttccaataattagtagtaacattcttccccaatgtaaataacttcaaaccctaat 10268223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 11790370 - 11790317
Alignment:
Q  192 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 245  Q
    ||||| |||||| || || ||||||||||||||||| ||||||||||| |||||    
T  11790370 atcttcaagctctatcttgaatggtgatgtgagagtacttgaatgttggtgtcc 11790317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 31823191 - 31823142
Alignment:
Q  20 ataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    ||||||||||||   ||||| |||||||||||||| ||||||||||||||    
T  31823191 ataattagtggttcagttctgccccaattcaaaaaacttcaaaccctaat 31823142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 38881763 - 38881824
Alignment:
Q  8 aaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 69  Q
    ||||||||| | ||||| ||||||   |||||||||||||||||||| ||| ||||||||||    
T  38881763 aaatttcttccaataataagtggtccagttcttccccaattcaaaaaacttgaaaccctaat 38881824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 42895321 - 42895353
Alignment:
Q  207 gtttaatggtgatgtgagagtgcttgaatgttg 239  Q
    ||||||||||| |||||||||||||||||||||    
T  42895321 gtttaatggtgttgtgagagtgcttgaatgttg 42895353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 17950919 - 17951152
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaa 104  Q
    ||||| |||||| | |||||||  ||| |||||||||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||    
T  17950919 ccaaattttcttccaataattaagggtcacgttcttccccaaatcaaaaaattacaaaccctaat-ttttttaattgaatctgaaaaccaaaatctgcaa 17951017  T
Q  105 aatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctcc 204  Q
    ||||  ||||||||||| |||| || |||||||| |||||||| | |||||   |  ||||||||  |  ||| |||||||||||| ||||| |  ||||    
T  17951018 aattcattcaagcaaaactgttgaaattgaatctaaaatgatgggaggtggtcatttgggcaaaaagagctatcaaagtcaagcttcatcttcatcctcc 17951117  T
Q  205 atgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
    |||||||||||||||||||||||||||||||||||    
T  17951118 atgtttaatggtgatgtgagagtgcttgaatgttg 17951152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 35174740 - 35174974
Alignment:
Q  5 ccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaa 104  Q
    ||||| |||||| | |||||||  ||| |||||||||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||    
T  35174740 ccaaattttcttccaataattaagggtcacgttcttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaa 35174839  T
Q  105 aatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctcc 204  Q
    ||||  ||||||||||| |||| || |||||||| |||| ||| | ||||    || ||||||||  |  ||| |||||||||||| ||||| |  ||||    
T  35174840 aattcattcaagcaaaactgttgaaattgaatctaaaataatgggaggtgatcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctcc 35174939  T
Q  205 atgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
    ||||||||||||||| ||||||||| |||||||||    
T  35174940 atgtttaatggtgatatgagagtgcctgaatgttg 35174974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 239
Target Start/End: Complemental strand, 34344969 - 34344824
Alignment:
Q  93 caaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagcttta 192  Q
    |||||||  |||||||  || |||||||| |||| || |||||||| |||||||  |||||||   || ||||||||  |  ||| |||||||||||| |    
T  34344969 caaaatctgcaaaattcatttaagcaaaagtgttgaaattgaatctaaaatgatt-ggggtggtcatatgggcaaaaagagctatcaaagtcaagcttca 34344871  T
Q  193 tctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttg 239  Q
     ||| |  |||||||||||||||||||||||||||||||||||||||    
T  34344870 acttcatcctccatgtttaatggtgatgtgagagtgcttgaatgttg 34344824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 17936275 - 17936042
Alignment:
Q  1 attcccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatca 100  Q
    |||||||||||||||| |  |||||| ||  |||||| || || | ||| |||| ||||||||||||||        |||||||| ||||| |||||||     
T  17936275 attcccaaaatttcttccattaattaatgacaacgttattgcctacttctaaaaacttcaaaccctaatttgttttgattgaatctgaaatccaaaatcc 17936176  T
Q  101 ccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaag-caattatgaaagtcaagctttatctttaa 199  Q
    ||||||    ||||||||||||||||||  ||||||| ||||||||| | |||||  ||| ||||||||  || || | |||||| ||||| ||||| ||    
T  17936175 ccaaaaaaaattcaagcaaaattgttcagattgaatccgaaatgatgggtggtggacgtatgggcaaaaaacagttctcaaagtcgagcttcatcttcaa 17936076  T
Q  200 gctccatgtttaatggtgatgtgagagtgcttga 233  Q
      |  ||||||||||||||||| ||| |||||||    
T  17936075 aatttatgtttaatggtgatgtcagaatgcttga 17936042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 31210170 - 31210129
Alignment:
Q  20 ataattagtggtaacgttcttccccaattcaaaaagcttcaa 61  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  31210170 ataattagtggtaactttcttccccaattcaaaaaacttcaa 31210129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 38022 - 37856
Alignment:
Q  1 attcccaaaatttctttcgataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaat-tcaaaatc 99  Q
    |||||||||| ||||| | ||||||||||||||||||||||||||||| ||| | | ||||||||||||        ||||||||||||||   ||||||    
T  38022 attcccaaaaattcttccaataattagtggtaacgttcttccccaattgaaataacctcaaaccctaat--tttttgattgaatccgaaatcaaaaaatc 37925  T
Q  100 accaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaa 169  Q
     |||||||| |||||| ||||| ||||  | |||||||||||||||||| ||||||||||| ||||||||    
T  37924 cccaaaattccttcaaacaaaactgttgtaattgaatctgaaatgatga-gggtgggtgtatgggcaaaa 37856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University