View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6865A_low_153 (Length: 255)
Name: NF6865A_low_153
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_153 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 45148847 - 45149087
Alignment:
| Q |
15 |
tttgcatatgtgcagagtggaatgttggatgaagcgagaagagttttcgacgaaatgctgggaaaaagaaaaatgacatacaatgtgatgattgtaggat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | ||| |||||||||||||||||| ||||| |
|
|
| T |
45148847 |
tttgcatatgtgcagagtggaatgttggatgaagcgagaagagttttcgatgaaatgccgggaaaaagagagatggcatacaatgtgatgattgcaggat |
45148946 |
T |
|
| Q |
115 |
atgtgcaatacaataaaatggatatggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaatacaatgatcaacggctatggtca |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||| |
|
|
| T |
45148947 |
atgtgcaatacaagaaaatggatatggcaagggaattgtttgaggcaatgccttgtcggaatgtaggttcatggaataccattatcagcggctatggtca |
45149046 |
T |
|
| Q |
215 |
gaacgaagatattgctcaagctatgaaattgtttcacatga |
255 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||| |||||| |
|
|
| T |
45149047 |
gaacggagatattgctcaagctagggaattgtttgacatga |
45149087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 45165284 - 45165430
Alignment:
| Q |
91 |
catacaatgtgatgattgtaggatatgtgcaatacaataaaatggatatggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaa |
190 |
Q |
| |
|
||||||||| ||||||| || ||||||||| || |||||||| || |||||||| ||||||||| | ||||| ||||||||| || |||||||||| |
|
|
| T |
45165284 |
catacaatgcaatgattgcgggttatgtgcaaactaagaaaatggacatcgcaagggagttgtttgagtctatgccctgtcggaatataagttcatggaa |
45165383 |
T |
|
| Q |
191 |
tacaatgatcaacggctatggtcagaacgaagatattgctcaagcta |
237 |
Q |
| |
|
||| ||||| | ||||||||||||| | ||| |||||||| |||| |
|
|
| T |
45165384 |
taccatgattacaggctatggtcagattggagacattgctcaggcta |
45165430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 24137053 - 24136815
Alignment:
| Q |
15 |
tttgcatatgtgcagagtggaatgttggatgaagcgagaagagttttcgacgaaatgctgggaaaaagaaaaatgacatacaatgtgatgattgtaggat |
114 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| |||||||||||||||||||||| | ||| |
|
|
| T |
24137053 |
tttgcatatgtgcatagtggaatgttggatgaagcgagaggagttttcgatgaaatgccgggaaaaagaaagatgacatacaatgtgatgattgcatgat |
24136954 |
T |
|
| Q |
115 |
atgtgcaatacaataaaatggatatggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaatacaatgatcaacggctatggtca |
214 |
Q |
| |
|
|||||||| |||| ||||||||||||| ||||||||||| ||||| |||||| |||| |||||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
24136953 |
atgtgcaaaacaagaaaatggatatgg-aagggaattgtatgaggtaatgccttgtcagaatgtaggttcctggaa-accatgatcaacggctatggtca |
24136856 |
T |
|
| Q |
215 |
gaacgaagatattgctcaagctatgaaattgtttcacatga |
255 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
24136855 |
gaacgaagatattgctcaagctaggaaattgtttgacatga |
24136815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 24134742 - 24134502
Alignment:
| Q |
15 |
tttgcatatgtgcagagtggaatgttggatgaagcgagaagagttttcgacgaaatgctgggaaaaagaaaaatgacatacaatgtgatgattgtaggat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| ||||||| |||| |||||||||||||||||| || ||| |
|
|
| T |
24134742 |
tttgcatatgtgcagagtggaatgttggatcatgcgagaagagttttcgatgaaatgccgggaaaatgaaagatgacatacaatgtgatggttaagggaa |
24134643 |
T |
|
| Q |
115 |
atgtgcaatacaataaaatggatatggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaatacaatgatcaacggctatggtca |
214 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||| ||| |
|
|
| T |
24134642 |
atgtgcaatacaagcaaatggatatggcaagggaattgtttgaggcaatgccatgttggaatgtaggttcgtggaataccatgatcaacggctatgatca |
24134543 |
T |
|
| Q |
215 |
gaacgaagatattgctcaagctatgaaattgtttcacatga |
255 |
Q |
| |
|
||| | | |||||||||||| | ||||||||| |||||| |
|
|
| T |
24134542 |
gaaaggaaatattgctcaagttggcaaattgtttgacatga |
24134502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University