View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6865A_low_158 (Length: 254)
Name: NF6865A_low_158
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_158 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 37181791 - 37181540
Alignment:
| Q |
1 |
gaccattcagtgaaattctttttcaccattcttctcgtgcgtcccttgttttgtcgaaaatattttcgttcggattttaaaatttagagtgtgtttttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37181791 |
gaccattcagtgaaattctttttcaccatacttctcgtgcgtcccttgttttctcgaaaatattttcgtttggattttaaaatttagagtgtgtttttct |
37181692 |
T |
|
| Q |
101 |
tgttcgaaatatataatctgaacgcattgtacatactatttgaatttgttctcttccaccacacttttattttatgaaattactcagtttaggttatact |
200 |
Q |
| |
|
|||||| ||||||||||| |||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
37181691 |
tgttcggaatatataatccgaacacattgtacatactatttgaatccgttctcttccaccaca-ttttattttatgaaattactctgtttagattatact |
37181593 |
T |
|
| Q |
201 |
ataaatacatcgactttagttaattaatttgtctctcataaaaatgatcggag |
253 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37181592 |
ataaatgcatcaactttagttaattaatttgtctctcataaaaatgatcggag |
37181540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 7158037 - 7157988
Alignment:
| Q |
203 |
aaatacatcgactttagttaattaatttgtctctcataaaaatgatcgga |
252 |
Q |
| |
|
||||||||||| |||| |||||| |||||||||| ||||||| ||||||| |
|
|
| T |
7158037 |
aaatacatcgattttaattaatttatttgtctcttataaaaaagatcgga |
7157988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University