View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_159 (Length: 252)
Name: NF6865A_low_159
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_159 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 52478151 - 52478375
Alignment:
| Q |
7 |
aaattaacattagatagtcatggtcatgagtgacgccatgccattgttgacggcctattagcaactggtctagaactgttgttattctcagtggacattt |
106 |
Q |
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| T |
52478151 |
aaattaacattagatagtcatggtcatgagtgacgccatgccattgttgacggcctattagcaactggtctagaactgttgttattctcagtggacattt |
52478250 |
T |
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| Q |
107 |
acaccatcactttaccgttttttatttgtatgagttaattataacggtgatcttttttaatattgtcggttctcaagtcatcatggctttattagagatg |
206 |
Q |
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|||||||||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52478251 |
acaccatcactttacc-tttattatttgtataagtaaattataacggtgatcttttttaatattgtcggttctcaagtcatcatggctttattagagatg |
52478349 |
T |
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| Q |
207 |
ttacccacggttcaatttgcttcttg |
232 |
Q |
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|||||||||||||||||||||||||| |
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| T |
52478350 |
ttacccacggttcaatttgcttcttg |
52478375 |
T |
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