View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_166 (Length: 250)

Name: NF6865A_low_166
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_166
NF6865A_low_166
[»] chr1 (4 HSPs)
chr1 (1-233)||(20198912-20199144)
chr1 (85-233)||(22889644-22889790)
chr1 (61-226)||(20845079-20845244)
chr1 (27-91)||(22889564-22889628)
[»] chr3 (5 HSPs)
chr3 (88-233)||(18042632-18042774)
chr3 (104-231)||(15570810-15570935)
chr3 (141-222)||(19636041-19636122)
chr3 (33-233)||(17704050-17704248)
chr3 (33-93)||(15570725-15570783)
[»] chr8 (1 HSPs)
chr8 (33-233)||(22478206-22478403)
[»] scaffold0561 (1 HSPs)
scaffold0561 (118-233)||(7698-7811)
[»] chr7 (3 HSPs)
chr7 (87-208)||(16220693-16220811)
chr7 (27-82)||(16218461-16218516)
chr7 (104-151)||(14166925-14166971)
[»] scaffold0521 (2 HSPs)
scaffold0521 (140-233)||(6307-6400)
scaffold0521 (47-99)||(6407-6457)
[»] scaffold0059 (1 HSPs)
scaffold0059 (118-233)||(55296-55409)
[»] scaffold0226 (2 HSPs)
scaffold0226 (104-228)||(16138-16263)
scaffold0226 (104-228)||(25532-25657)
[»] chr4 (7 HSPs)
chr4 (118-233)||(16386003-16386119)
chr4 (104-153)||(10685960-10686008)
chr4 (104-153)||(10719840-10719888)
chr4 (104-153)||(10899600-10899648)
chr4 (104-153)||(10933609-10933657)
chr4 (32-95)||(16386153-16386214)
chr4 (104-166)||(33745208-33745269)
[»] chr5 (3 HSPs)
chr5 (33-224)||(22249800-22249990)
chr5 (181-235)||(23625732-23625786)
chr5 (104-164)||(23625788-23625846)
[»] scaffold0008 (1 HSPs)
scaffold0008 (88-172)||(38004-38087)
[»] chr6 (1 HSPs)
chr6 (104-171)||(21721104-21721171)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 20198912 - 20199144
Alignment:
Q  1 gaagaaaatgatatatctactctctatatgcctgtatatgtgcctctgcatgtttctatgtgtctgcatttattttgcagctttatgtatgcctgtattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20198912 gaagaaaatgatatatctactctctatatgcctgtatatgtgcctctgcatgtttctatgtgtctgcatttattttgcagctttatgtatgcctgtattc 20199011  T
Q  101 atgtgttgttgcatttattttgcaactattttcaggttgtgtgtagatgttgttactgatgttgcaacatctctatattgtctgagaatttatttttctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20199012 atgtgttgttgcatttattttgcaactattttcaggttgtgtgtagatgttgttactgatgttgcaacatctctatattgtctgagaatttatttttctc 20199111  T
Q  201 agcttttattatgtacatgttccttgttgatgt 233  Q
    |||||||||||||||||||||||||||||||||    
T  20199112 agcttttattatgtacatgttccttgttgatgt 20199144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 85 - 233
Target Start/End: Original strand, 22889644 - 22889790
Alignment:
Q  85 atgtatgcctgtattcatgtgttgttgcatttattttgcaactattttcaggttgtgtgtagatgttgttactgatgttgcaacatctctatattgtctg 184  Q
    |||| |||||||||||   |||||||||||||| ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22889644 atgtttgcctgtattctcatgttgttgcatttacttttcaactattt-caggtt-tgtgtagatgttgttactgatgttgcaacatctctatattgtctg 22889741  T
Q  185 agaatttatttttctcagcttttattatgtacatgttccttgttgatgt 233  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  22889742 agaatttatttttctcagcttttattgtgtacatgttccttgctgatgt 22889790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 61 - 226
Target Start/End: Original strand, 20845079 - 20845244
Alignment:
Q  61 tgtctgcatttattttgcagctttatgtat----gcctgtattcatgtgttgttgcatttattttgcaactattttcaggttgtgtgtagatgttgttac 156  Q
    ||||||||||| ||||||||||||||||||    || ||||||| |||  ||||||||||| |||||||||||||||||| ||||  |||||||||||||    
T  20845079 tgtctgcatttgttttgcagctttatgtatacttgcatgtattcctgt--tgttgcatttactttgcaactattttcaggatgtg--tagatgttgttac 20845174  T
Q  157 tgatgttgcaacatctctatattgtctgagaatttatttttctcagcttttattatgtacatgttccttg 226  Q
    | |||||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  20845175 taatgttgcagcatctctatgttgtctgagaatttattcttctcagcttttattttgtacatgttccttg 20845244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 22889564 - 22889628
Alignment:
Q  27 tatgcctgtatatgtgcctctgcatgtttctatgtgtctgcatttattttgcagctttatgtatg 91  Q
    ||||||| ||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  22889564 tatgcctatatatgtgcttctgcatgtatctttgtgtctgcatttattttgcagctttatgtatg 22889628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 18042632 - 18042774
Alignment:
Q  88 tatgcctgtattcatgtgttgttgcatttattttgcaactattttcaggttgtgtgtagatgttgttactgatgttgcaacatctctatattgtctgaga 187  Q
    ||||||| |||||||||  ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||  ||||||| |    
T  18042632 tatgcctatattcatgt--tgttgcatttattttgcaactattt-caggttatgtgtagatgttgttactgatgttgcaacatctttatgatgtctgaaa 18042728  T
Q  188 atttatttttctcagcttttattatgtacatgttccttgttgatgt 233  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||||    
T  18042729 atttatttttctcagcttgtattgtgtacatgttccttgctgatgt 18042774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 104 - 231
Target Start/End: Original strand, 15570810 - 15570935
Alignment:
Q  104 tgttgttgcatttattttgcaactattttcaggttgtgtgtagatgttgttactgatgttgcaacatctctatattgtctgagaatttatttttctcagc 203  Q
    |||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||| |||| ||||||||||||| ||||| |    
T  15570810 tgttgttgtatttattttgcaactattttcaggttgtg--tagatgttgttactgatgttgcaacatctatattttgtttgagaatttatttctctcaac 15570907  T
Q  204 ttttattatgtacatgttccttgttgat 231  Q
    ||||||| ||||||||||||||| ||||    
T  15570908 ttttattgtgtacatgttccttgctgat 15570935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 19636122 - 19636041
Alignment:
Q  141 gtgtagatgttgttactgatgttgcaacatctctatattgtctgagaatttatttttctcagcttttattatgtacatgttc 222  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||| |||||||||||    
T  19636122 gtgtagatgttgttactgatgttgcaacatctctattttgtttgagaatttatttttctcagcatttattgtgtacatgttc 19636041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 17704248 - 17704050
Alignment:
Q  33 tgtatatgtgcctctgcatgtttctatgtgtctgcatttattttgcagcttta------tgtatgcctgtattcatgtgttgttgcatttattttgcaac 126  Q
    ||||||||||| ||||||||| ||| |||||||||||| ||||||||||| |       ||||||||| |||||||||  |||||| |||     |||||    
T  17704248 tgtatatgtgcttctgcatgtatctttgtgtctgcatt-attttgcagctatgaagacttgtatgcctttattcatgt--tgttgcgttt-----gcaac 17704157  T
Q  127 tattttcaggttgtgtgtagatgttgttactgatgttgcaacatctctatattgtctgagaatttatttttctcagctt---ttattatgtacatgttcc 223  Q
    ||| ||||||||||||  ||||||||  ||| ||| ||||||||||||||  |||||||||||||| ||||||||||||   ||||||||||||||||||    
T  17704156 tatcttcaggttgtgt--agatgttggcactaatgctgcaacatctctattctgtctgagaattta-ttttctcagcttttattattatgtacatgttcc 17704060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 15570725 - 15570783
Alignment:
Q  33 tgtatatgtgcctctgcatgtttctatgtgtctgcatttattttgcagctttatgtatgcc 93  Q
    ||||||||||| ||| ||||| ||| | |||||||||||||||||||||  ||||||||||    
T  15570725 tgtatatgtgcttctacatgtatctttctgtctgcatttattttgcagc--tatgtatgcc 15570783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 22478403 - 22478206
Alignment:
Q  33 tgtatatgtgcctctgcatgtttctatgtgtctgcatttattttgcagctttat------gtatgcctgtattcatgtgttgttgcatttattttgcaac 126  Q
    ||||||||||| ||||||||| ||| |||||||||||||||||||||||| | |      |||||| |||||||||||  ||||||     |||||||||    
T  22478403 tgtatatgtgcttctgcatgtatctttgtgtctgcatttattttgcagctatgttttcttgtatgcatgtattcatgt--tgttgc-----ttttgcaac 22478311  T
Q  127 tattttcaggttgtgtgtagatgttgttactgatgttgcaacatctctatattgtctgagaatttatttttctcagcttttattatgtacatgttccttg 226  Q
    ||| ||||||||||||  |||||||||||||| |||| ||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||    
T  22478310 tatcttcaggttgtgt--agatgttgttactgttgttacaacatctctattctgtctgagaatttatttttctcagcttttattgtgtacatgttccttg 22478213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 118 - 233
Target Start/End: Complemental strand, 7811 - 7698
Alignment:
Q  118 ttttgcaactattttcaggttgtgtgtagatgttgttactgatgttgcaacatctctatattgtctgagaatttatttttctcagcttttattatgtaca 217  Q
    |||||||||||| ||||||||||||  ||||||| |||||||||||  | ||||||||| |||||||||||||||||||||| |||||||||| ||||||    
T  7811 ttttgcaactatcttcaggttgtgt--agatgttattactgatgttcaatcatctctattttgtctgagaatttatttttctaagcttttattttgtaca 7714  T
Q  218 tgttccttgttgatgt 233  Q
    ||||||||||||||||    
T  7713 tgttccttgttgatgt 7698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 16220693 - 16220811
Alignment:
Q  87 gtatgcctgtattcatgtgttgttgcatttattttgcaactattttcaggttgtgtgtagatgttgttactgatgttgcaacatctctatattgtctgag 186  Q
    |||||| |||||||||||  |||||||||||||||||||||||||| ||||| ||||||| |||||| ||| | |||| ||| || ||||||||||| ||    
T  16220693 gtatgcatgtattcatgt--tgttgcatttattttgcaactatttt-aggttctgtgtaggtgttgtcactaaggttgtaacttcactatattgtctaag 16220789  T
Q  187 aatttatttttctcagctttta 208  Q
    ||||||||||||||||||||||    
T  16220790 aatttatttttctcagctttta 16220811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 16218461 - 16218516
Alignment:
Q  27 tatgcctgtatatgtgcctctgcatgtttctatgtgtctgcatttattttgcagct 82  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  16218461 tatgcctgtatatgtgcttctgcatgtatctatgtgtctgcatttatttttcagct 16218516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 14166971 - 14166925
Alignment:
Q  104 tgttgttgcatttattttgcaactattttcaggttgtgtgtagatgtt 151  Q
    ||||||||||||||||||||||||| | ||||||| ||||||||||||    
T  14166971 tgttgttgcatttattttgcaacta-tgtcaggttatgtgtagatgtt 14166925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0521 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0521
Description:

Target: scaffold0521; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 6400 - 6307
Alignment:
Q  140 tgtgtagatgttgttactgatgttgcaacatctctatattgtctgagaatttatttttctcagcttttattatgtacatgttccttgttgatgt 233  Q
    ||||||||||||||||||||||||  | ||||||||| |||| |||||||||||||||||||||||||| | ||||||||||||||| ||||||    
T  6400 tgtgtagatgttgttactgatgttatagcatctctattttgtttgagaatttatttttctcagcttttactgtgtacatgttccttgctgatgt 6307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0521; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 6457 - 6407
Alignment:
Q  47 tgcatgtttctatgtgtctgcatttattttgcagctttatgtatgcctgtatt 99  Q
    ||||||| ||| |||||||||||||||||||||||  |||||||||| |||||    
T  6457 tgcatgtatctttgtgtctgcatttattttgcagc--tatgtatgccagtatt 6407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 233
Target Start/End: Original strand, 55296 - 55409
Alignment:
Q  118 ttttgcaactattttcaggttgtgtgtagatgttgttactgatgttgcaacatctctatattgtctgagaatttatttttctcagcttttattatgtaca 217  Q
    ||||| |||||| ||||||||||||   ||||||||||||| |||| ||||||||||||  ||| ||||||||||||||||||| |||||||| ||||||    
T  55296 ttttgtaactatcttcaggttgtgtt--gatgttgttactgttgttacaacatctctattctgtttgagaatttatttttctcatcttttattgtgtaca 55393  T
Q  218 tgttccttgttgatgt 233  Q
    ||||||||| ||||||    
T  55394 tgttccttgctgatgt 55409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 16138 - 16263
Alignment:
Q  104 tgttgttgcatttattttgcaactattttcaggttgtgtgtagatgttgttactgatgttgcaacatctctatattg-tctgagaatttattttt-ctca 201  Q
    ||||||||||||||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||| ||||    
T  16138 tgttgttgcatttattttgcaactattttaag-ttatgtgtagatgttgttattgatgttgcaacatctctatgttgatatgagaatttattttttctca 16236  T
Q  202 gc-ttttattatgtacatgttccttgtt 228  Q
    |  ||||| | |||||||||||||||||    
T  16237 gaattttaat-tgtacatgttccttgtt 16263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 25532 - 25657
Alignment:
Q  104 tgttgttgcatttattttgcaactattttcaggttgtgtgtagatgttgttactgatgttgcaacatctctatattg-tctgagaatttattttt-ctca 201  Q
    ||||||||||||||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||| ||||    
T  25532 tgttgttgcatttattttgcaactattttaag-ttatgtgtagatgttgttattgatgttgcaacatctctatgttgatatgagaatttattttttctca 25630  T
Q  202 gc-ttttattatgtacatgttccttgtt 228  Q
    |  ||||| | |||||||||||||||||    
T  25631 gaattttaat-tgtacatgttccttgtt 25657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 233
Target Start/End: Complemental strand, 16386119 - 16386003
Alignment:
Q  118 ttttgcaactattttcaggttgtgtgtagatgttgttactgatgttgcaacatctctatattgtctgagaatttatttttctcagctt---ttattatgt 214  Q
    |||||||||||||||||||| ||||  ||||||||||||  ||||| |||||||| |||  ||||||||||||| ||||||||| |||   ||||| |||    
T  16386119 ttttgcaactattttcaggtggtgt--agatgttgttacatatgttacaacatctttattatgtctgagaatttttttttctcaacttctattattgtgt 16386022  T
Q  215 acatgttccttgttgatgt 233  Q
    |||||||||||| ||||||    
T  16386021 acatgttccttgctgatgt 16386003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 10686008 - 10685960
Alignment:
Q  104 tgttgttgcatttattttgcaactattttcaggttgtgtgtagatgttgt 153  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  10686008 tgttgttgcatttattttgcaacta-attcaggttatgtgtagatgttgt 10685960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 10719888 - 10719840
Alignment:
Q  104 tgttgttgcatttattttgcaactattttcaggttgtgtgtagatgttgt 153  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  10719888 tgttgttgcatttattttgcaacta-attcaggttatgtgtagatgttgt 10719840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 10899648 - 10899600
Alignment:
Q  104 tgttgttgcatttattttgcaactattttcaggttgtgtgtagatgttgt 153  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  10899648 tgttgttgcatttattttgcaacta-attcaggttatgtgtagatgttgt 10899600  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 10933657 - 10933609
Alignment:
Q  104 tgttgttgcatttattttgcaactattttcaggttgtgtgtagatgttgt 153  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  10933657 tgttgttgcatttattttgcaacta-attcaggttatgtgtagatgttgt 10933609  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 16386214 - 16386153
Alignment:
Q  32 ctgtatatgtgcctctgcatgtttctatgtgtctgcatttattttgcagctttatgtatgcctg 95  Q
    |||||||||||| ||||||||| |||||||||||||||  |||||||| |  ||||||||||||    
T  16386214 ctgtatatgtgcttctgcatgtatctatgtgtctgcatccattttgcaac--tatgtatgcctg 16386153  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 33745269 - 33745208
Alignment:
Q  104 tgttgttgcatttattttgcaactattttcaggttgtgtgtagatgttgttactgatgttgca 166  Q
    |||||||||||| ||||||||||||  |||| ||| |||||||||||||  ||||||||||||    
T  33745269 tgttgttgcattcattttgcaacta-cttcaagttatgtgtagatgttggcactgatgttgca 33745208  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 224
Target Start/End: Original strand, 22249800 - 22249990
Alignment:
Q  33 tgtatatgtgcctctgcatgtttctatgtgtctgcatttattttgcagcttt------atgtatgcctgtattcatgtgttgttgcatttattttgcaac 126  Q
    ||||||||||| ||||||||| ||| || ||||||||||||||||||||| |       || |||||||||||||  |||||||||     |||||||||    
T  22249800 tgtatatgtgcttctgcatgtatctttgcgtctgcatttattttgcagctatgtttgcttgaatgcctgtattca--tgttgttgc-----ttttgcaac 22249892  T
Q  127 tattttcaggttgtgtgtagatgttgttactgatgttgcaacatctctatattgtctgagaatttatttttctcagctt---ttattatgtacatgttcc 223  Q
    ||| | |||||  |||||| ||||||  ||| ||| ||||||||||||||  ||| ||||||| || |||||||| |||   ||||||||||||||||||    
T  22249893 tatctccaggt--tgtgtaaatgttggcactaatgctgcaacatctctattgtgtttgagaatcta-ttttctcaacttttattattatgtacatgttcc 22249989  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 23625786 - 23625732
Alignment:
Q  181 tctgagaatttatttttctcagcttttattatgtacatgttccttgttgatgtcc 235  Q
    ||||| ||||||||||||||||  ||| |  ||||||||||||||||||||||||    
T  23625786 tctgaaaatttatttttctcagtatttgtgttgtacatgttccttgttgatgtcc 23625732  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 23625846 - 23625788
Alignment:
Q  104 tgttgttgcatttattttgcaactattttcaggttgtgtgtagatgttgttactgatgttg 164  Q
    ||||||||||| ||||||||||||| ||||||||| ||||||||||||   ||||||||||    
T  23625846 tgttgttgcatatattttgcaacta-tttcaggtt-tgtgtagatgtttgcactgatgttg 23625788  T

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Target: scaffold0008 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 38087 - 38004
Alignment:
Q  88 tatgcctgtattcatgtgttgttgcatttattttgcaactattttcaggttgtgtgtagatgttgttactgatgttgcaacatct 172  Q
    ||||||||||||||  |||||||||| | ||| ||||||||||  |||||| |||||||||||||| || | |||||||||||||    
T  38087 tatgcctgtattcagttgttgttgcactcattgtgcaactattc-caggttatgtgtagatgttgtcacggttgttgcaacatct 38004  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 21721104 - 21721171
Alignment:
Q  104 tgttgttgcatttattttgcaactattttcagg-ttgtgtgtagatgttgttactgatgttgcaacatc 171  Q
    |||||||||||||||||| |||||| | ||||| || |||||||||||||  ||| |||||||||||||    
T  21721104 tgttgttgcatttattttacaacta-tgtcaggtttatgtgtagatgttggcactcatgttgcaacatc 21721171  T

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