View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6865A_low_171 (Length: 249)
Name: NF6865A_low_171
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_171 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 38567058 - 38567284
Alignment:
| Q |
1 |
tcgactttcgagttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccgg |
100 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567058 |
tcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccgg |
38567157 |
T |
|
| Q |
101 |
ataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567158 |
ataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaatt |
38567257 |
T |
|
| Q |
201 |
gtctcaaacattttgtaagccgccgcc |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
38567258 |
gtctcaaacattttgtaagccgccgcc |
38567284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 38525935 - 38526162
Alignment:
| Q |
3 |
gactttcgagttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggat |
102 |
Q |
| |
|
||||||| | |||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38525935 |
gactttccacttccactttgtccaaccaatgccgcggttgttccgcttgatatatgaagagagaatccattgaatatcagctcctcaggtcttgccggat |
38526034 |
T |
|
| Q |
103 |
aactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38526035 |
aactgaaataaacttctttcaactctatctcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgt |
38526134 |
T |
|
| Q |
203 |
ctcaaacattttgtaagccgccgcctga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
38526135 |
ctcaaacattttgtaagccgccgcctga |
38526162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University