View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_173 (Length: 249)

Name: NF6865A_low_173
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_173
NF6865A_low_173
[»] chr1 (4 HSPs)
chr1 (16-249)||(20198635-20198868)
chr1 (16-243)||(22889260-22889487)
chr1 (16-243)||(20844772-20844999)
chr1 (16-172)||(22962965-22963114)
[»] chr5 (3 HSPs)
chr5 (16-244)||(22249469-22249700)
chr5 (16-195)||(26039090-26039269)
chr5 (33-170)||(25678167-25678303)
[»] chr3 (1 HSPs)
chr3 (19-243)||(15570404-15570631)
[»] scaffold0226 (2 HSPs)
scaffold0226 (17-204)||(15761-15948)
scaffold0226 (17-204)||(25155-25342)
[»] scaffold0561 (1 HSPs)
scaffold0561 (16-207)||(8035-8226)
[»] chr4 (1 HSPs)
chr4 (16-195)||(16386350-16386528)
[»] chr7 (1 HSPs)
chr7 (16-170)||(2077993-2078147)
[»] chr8 (1 HSPs)
chr8 (16-151)||(18674963-18675098)
[»] scaffold0359 (1 HSPs)
scaffold0359 (22-63)||(3785-3826)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 20198635 - 20198868
Alignment:
Q  16 gacatcatttcatcagagatctttttgaagaaaaggttgtgacacttgagcatgttgacacagaagagcaactggcagacattttcaccaaggccttaga 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20198635 gacatcatttcatcagagatcttgttgaagaaaaggttgtgacacttgagcatgttgacacagaagagcaactggcagacattttcaccaaggccttaga 20198734  T
Q  116 tgctaaacaatttgaaaaactaaggggcaagttgggaattttcttgcatgaggaggcttgattatctatgttgtcagacgcgctatcaaatcgctttttg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20198735 tgctaaacaatttgaaaaactaaggggcaagttgggaattttcttgcatgaggaggcttgattatctatgttgtcagacgcgctatcaaatcgctttttg 20198834  T
Q  216 cacatattagatttgtggggtattctgctatgaa 249  Q
    ||||||||||||||||||||||||||||||||||    
T  20198835 cacatattagatttgtggggtattctgctatgaa 20198868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 22889260 - 22889487
Alignment:
Q  16 gacatcatttcatcagagatctttttgaagaaaaggttgtgacacttgagcatgttgacacagaagagcaactggcagacattttcaccaaggccttaga 115  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| ||| |||||||||||||| |||||    
T  22889260 gacatcatttcatcagagatcttgttgaagaaaaggttatgacacttgagcatgttgacacagaggagcaactggtagatattttcaccaaggctttaga 22889359  T
Q  116 tgctaaacaatttgaaaaactaaggggcaagttgggaattttcttgcatgaggaggcttgattatctatgttgtcagacgcgctatcaaatcgctttttg 215  Q
    ||||||||||||||||||||||||||||||||||||||||| | | ||||||||| |||||| || | |||||| ||||| | ||||||||| |||||||    
T  22889360 tgctaaacaatttgaaaaactaaggggcaagttgggaatttgcctacatgaggagacttgatcatatgtgttgtaagacgtgttatcaaatctctttttg 22889459  T
Q  216 cacatattagatttgtggggtattctgc 243  Q
    ||| | || |||||||||||||| ||||    
T  22889460 cacgtctttgatttgtggggtatactgc 22889487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 20844772 - 20844999
Alignment:
Q  16 gacatcatttcatcagagatctttttgaagaaaaggttgtgacacttgagcatgttgacacagaagagcaactggcagacattttcaccaaggccttaga 115  Q
    ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||| ||| ||||||||| |||||||||||||||||||||||||    
T  20844772 gacatcatttcatcagagatcttgttaaagaaaaggttgtgacactttagcatgttgacatagaggagcaactgacagacattttcaccaaggccttaga 20844871  T
Q  116 tgctaaacaatttgaaaaactaaggggcaagttgggaattttcttgcatgaggaggcttgattatctatgttgtcagacgcgctatcaaatcgctttttg 215  Q
    | ||||||||||| ||||||||||||||||||||||||||    ||||||||||||||||||||| | |||||||||||| ||||||||||| |||||||    
T  20844872 ttctaaacaattttaaaaactaaggggcaagttgggaattcgtctgcatgaggaggcttgattatttgtgttgtcagacgtgctatcaaatctctttttg 20844971  T
Q  216 cacatattagatttgtggggtattctgc 243  Q
    ||  | || ||||||| |||||| ||||    
T  20844972 catgtctttgatttgttgggtatactgc 20844999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 22962965 - 22963114
Alignment:
Q  16 gacatcatttcatcagagatctttttgaagaaaaggttgtgacacttgagcatgttgacacagaagagcaactggcagacattttcaccaaggccttaga 115  Q
    ||||||| ||||||||||||||| |||| || ||||||||||||||||||||||       | | ||||||||||||||||||||||||||||| ||| |    
T  22962965 gacatcacttcatcagagatcttgttgaggagaaggttgtgacacttgagcatg-------aaacgagcaactggcagacattttcaccaaggctttata 22963057  T
Q  116 tgctaaacaatttgaaaaactaaggggcaagttgggaattttcttgcatgaggaggc 172  Q
    ||||||||| ||||||||  |||||||||||||||||| || | |||||||||||||    
T  22963058 tgctaaacagtttgaaaagttaaggggcaagttgggaagttgcatgcatgaggaggc 22963114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 22249469 - 22249700
Alignment:
Q  16 gacatcatttcatcagagatctttttgaagaaaaggttgtgacacttgagcatgttgacacagaagagcaactggcagacattttcaccaaggccttaga 115  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||    
T  22249469 gacaccatttcatcagagatcttgttgaagaaaaggttgtgacacttgagcatgttgacacggaggagcaactgacagacattttcaccaaggccttaga 22249568  T
Q  116 tgctaaacaatttgaaaaactaaggggcaagttgggaattttcttgcatgaggaggcttgattatctatgttgtcagacgcgctatcaaatcgct---tt 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||  ||| | |||| ||| | |||||| |||| ||   ||    
T  22249569 tgctaaacaatttgaaaaactaaggggaaagttgggaattttcctgcatgaggaggcttgatcgtctgtattgtgagatgtgctatctaatctctacatt 22249668  T
Q  213 ttgcacatattagatttgtggggtattctgct 244  Q
    |||||||| || ||||||||| ||||| ||||    
T  22249669 ttgcacatctttgatttgtggagtattttgct 22249700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 26039269 - 26039090
Alignment:
Q  16 gacatcatttcatcagagatctttttgaagaaaaggttgtgacacttgagcatgttgacacagaagagcaactggcagacattttcaccaaggccttaga 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  26039269 gacatcatttcatcagagatcttgttgaagaaaaggttgtgacacttgagcatgttgacaaagaggagcaactggcagacattttcaccaaggccttaga 26039170  T
Q  116 tgctaaacaatttgaaaaactaaggggcaagttgggaattttcttgcatgaggaggcttgattatctatgttgtcagacg 195  Q
    |||||||||||||||||| |||||||| ||||||||||||  | |||||||| |||||| || |||| | |||| |||||    
T  26039169 tgctaaacaatttgaaaagctaaggggaaagttgggaattcgcctgcatgagaaggcttaatcatctgtcttgtgagacg 26039090  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 25678303 - 25678167
Alignment:
Q  33 gatctttttgaagaaaaggttgtgacacttgagcatgttgacacagaagagcaactggcagacattttcaccaaggccttagatgctaaacaatttgaaa 132  Q
    |||||| ||||||| ||||| ||||| ||||| |||||||  ||| | || ||| || ||||||||||||||||  || |||||| |||  | |||||||    
T  25678303 gatcttgttgaagagaaggtagtgacgcttgaacatgttgctaca-acgaacaattgacagacattttcaccaaatccctagatggtaagtagtttgaaa 25678205  T
Q  133 aactaaggggcaagttgggaattttcttgcatgaggag 170  Q
    || |||| | ||| ||||| ||||||||||||||||||    
T  25678204 aattaagagccaaattggggattttcttgcatgaggag 25678167  T

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Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 15570404 - 15570631
Alignment:
Q  19 atcatttcatcagagatctttttgaagaaaaggttgtgacacttgagcatgttgacacagaagagcaactggcagacattttcaccaaggccttagatgc 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  15570404 atcatttcatcagagatcttgttgaagaaaaggttgtgacacttgagcatgttgacacagaggagcaactggcagacattttcaccaaggcattagatgc 15570503  T
Q  119 taaacaatttgaaaaactaaggggcaagttgggaattttcttgcatgaggaggcttgattatctatgttgtcagacgcgctatcaaatc---gctttttg 215  Q
    |||||||||||||||||||||||| || |||||||||| | |||||||| ||||||||| |||| |||||| ||||| | | |||||||    |||||||    
T  15570504 taaacaatttgaaaaactaaggggaaaattgggaatttgcctgcatgagaaggcttgatcatctgtgttgtgagacgtgatgtcaaatctctactttttg 15570603  T
Q  216 cacatattagatttgtggggtattctgc 243  Q
    ||| | || |||||| ||||||||||||    
T  15570604 cacgtctttgatttgaggggtattctgc 15570631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 15761 - 15948
Alignment:
Q  17 acatcatttcatcagagatctttttgaagaaaaggttgtgacacttgagcatgttgacacagaagagcaactggcagacattttcaccaaggccttagat 116  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  15761 acatcatttcatcagagatcttgttgaagaaaaggttgtgacacttgaacatgttgaaacagaggagcaactggcagacattttcaccaaggccttagat 15860  T
Q  117 gctaaacaatttgaaaaactaaggggcaagttgggaattttcttgcatgaggaggcttgattatctatgttgtcagacgcgctatcaa 204  Q
    |||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||| |||| || ||| ||| | ||||||||    
T  15861 gctaaacaatttgaaaaattaaggggcaagttgggaatttgtctgcatgaggaggcttgatcatctgtgatgtgagatgtgctatcaa 15948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 25155 - 25342
Alignment:
Q  17 acatcatttcatcagagatctttttgaagaaaaggttgtgacacttgagcatgttgacacagaagagcaactggcagacattttcaccaaggccttagat 116  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  25155 acatcatttcatcagagatcttgttgaagaaaaggttgtgacacttgaacatgttgaaacagaggagcaactggcagacattttcaccaaggccttagat 25254  T
Q  117 gctaaacaatttgaaaaactaaggggcaagttgggaattttcttgcatgaggaggcttgattatctatgttgtcagacgcgctatcaa 204  Q
    |||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||| |||| || ||| ||| | ||||||||    
T  25255 gctaaacaatttgaaaaattaaggggcaagttgggaatttgtctgcatgaggaggcttgatcatctgtgatgtgagatgtgctatcaa 25342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 8226 - 8035
Alignment:
Q  16 gacatcatttcatcagagatctttttgaagaaaaggttgtgacacttgagcatgttgacacagaagagcaactggcagacattttcaccaaggccttaga 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||     
T  8226 gacatcatttcatcagagatcttgttgaagaaaaggttgtgacacttgagcatgttgaaacagaggagcaactggcagacattttcaccaaagccttagg 8127  T
Q  116 tgctaaacaatttgaaaaactaaggggcaagttgggaattttcttgcatgaggaggcttgattatctatgttgtcagacgcgctatcaaatc 207  Q
    |||||||| |||||||||||||| ||||||||||| ||||| | ||||||| ||||||||||  ||| |||||| ||||| ||| |||||||    
T  8126 tgctaaaccatttgaaaaactaaagggcaagttggaaatttgcctgcatgaagaggcttgatcctctgtgttgttagacgtgctgtcaaatc 8035  T

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Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 16386528 - 16386350
Alignment:
Q  16 gacatcatttcatcagagatctttttgaagaaaaggttgtgacacttgagcatgttgacacagaagagcaactggcagacattttcaccaaggccttaga 115  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||  | ||||||||||||||||| ||||||||    
T  16386528 gacatcatttcatcacagatcttgttgaagaaaatgttgtgacacttgagcatgttgacacagaggagcagttagcagacattttcaccaaagccttaga 16386429  T
Q  116 tgctaaacaatttgaaaaactaaggggcaagttgggaattttcttgcatgaggaggcttgattatctatgttgtcagacg 195  Q
    |||||||| |||||||||||||||||||||||||||||||| | |||||||||||  ||||| |||| |||||| |||||    
T  16386428 tgctaaac-atttgaaaaactaaggggcaagttgggaatttgcctgcatgaggagttttgatcatctgtgttgtgagacg 16386350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 2078147 - 2077993
Alignment:
Q  16 gacatcatttcatcagagatctttttgaagaaaaggttgtgacacttgagcatgttgacacagaagagcaactggcagacattttcaccaaggccttaga 115  Q
    ||||||| |||||||| |||||  ||||||| |||||||| || || |||||||| | ||| ||||| ||| |||| |||||||||||||| || |||||    
T  2078147 gacatcacttcatcagggatctggttgaagataaggttgtaactctagagcatgtagccactgaagaacaattggctgacattttcaccaaagctttaga 2078048  T
Q  116 tgctaaacaatttgaaaaactaaggggcaagttgggaattttcttgcatgaggag 170  Q
    ||  ||||||||||| || |||||| ||||||||||  ||| ||||||| |||||    
T  2078047 tgtcaaacaatttgagaatctaaggagcaagttgggtgtttgcttgcataaggag 2077993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 18675098 - 18674963
Alignment:
Q  16 gacatcatttcatcagagatctttttgaagaaaaggttgtgacacttgagcatgttgacacagaagagcaactggcagacattttcaccaaggccttaga 115  Q
    ||||||||| |||||| |||||| ||||||||||| ||||||| ||||| |||||    || ||||| ||| |||| |||||||| |||||||| || ||    
T  18675098 gacatcattacatcagggatcttgttgaagaaaagattgtgactcttgaacatgtatctactgaagaacaattggctgacatttttaccaaggctttgga 18674999  T
Q  116 tgctaaacaatttgaaaaactaaggggcaagttggg 151  Q
    ||  ||||||||||| ||  || || ||||||||||    
T  18674998 tgtaaaacaatttgagaagttatggagcaagttggg 18674963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 3826 - 3785
Alignment:
Q  22 atttcatcagagatctttttgaagaaaaggttgtgacacttg 63  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  3826 atttcatcagagatcttgttgaagaaaaggttgtgacacttg 3785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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