View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_179 (Length: 248)
Name: NF6865A_low_179
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_179 |
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Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 36470322 - 36470228
Alignment:
| Q |
26 |
actatttgttattagaaatcagataaggggagggaaaatgcaagggtggagtgtaatagtggacaggattgaggatagagaagaaaagattaaga |
120 |
Q |
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| T |
36470322 |
actatttattattagaaatcagataaggggagggaaaatgcaagggtggagtgtaatagtggacaggattgaggattgagaataaaagattaaga |
36470228 |
T |
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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 36470006 - 36469936
Alignment:
| Q |
116 |
taagatgctaaaatgtgtaaatgacgctcttatttaaaaagttggatgagcgagaaaggtatatttccttt |
186 |
Q |
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| T |
36470006 |
taagatgctaaaatgtgtaaatgacgctcttatttaaaaagttggctgagcgagaaagatatatttccttt |
36469936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 36468679 - 36468635
Alignment:
| Q |
204 |
aagaatttaatttgtgcacaagttgtttttaacaattaaagattg |
248 |
Q |
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| T |
36468679 |
aagaatttaatttgtgcacaagttgtttttaacaattgaagattg |
36468635 |
T |
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