View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_180 (Length: 248)
Name: NF6865A_low_180
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_180 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 25207655 - 25207884
Alignment:
| Q |
8 |
aggtgctgttacatgaggaacatggtgttgatccactgactgccatctttagaatcaatgacttggcaagtaattccattgaacaaaatcaggagcttgc |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25207655 |
aggttctgttacatgaggaacatggtgttgatccactgactgccatctgtagaatcaatgacttggaaagtaattccattgaacaaaatcaggagcttgc |
25207754 |
T |
|
| Q |
108 |
aagtactcctttgtacattgctctggagc------tatagcttatgccacgccggccactcagtatcagtcattgaagcgtaagcggagaaatgtcaggc |
201 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25207755 |
aagtactcctttgtacattgctctggagcataaattatagcttatgccacgccggccactcagtatcagtcgttgaagcgtaagcggagaaatgtcaggc |
25207854 |
T |
|
| Q |
202 |
aatatagttcacaaagcaccgagtgatgtc |
231 |
Q |
| |
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|||||||||||||| |||||||||||||| |
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| T |
25207855 |
aatatagttcacaagtcaccgagtgatgtc |
25207884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 19811176 - 19810957
Alignment:
| Q |
16 |
ttacatgaggaacatggtgttgatccactgactgccatctttagaatcaatgacttggcaagtaattccattgaacaaaatcaggagcttgcaagtactc |
115 |
Q |
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| T |
19811176 |
ttacatgaggaacatggtgttgatccattgactgccatgtgcagaatcaaagatctggcaattgcttccattgaacagaattcgaagcttgcaggtactc |
19811077 |
T |
|
| Q |
116 |
ctttgtacattgctctggagc----tatagcttatgccacgccggccactcagtatcagtcattgaagcgtaagcggagaaatgtcaggcaatatagttc |
211 |
Q |
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| T |
19811076 |
ctttatacattgctatggagcagattatagctcattccacgcctgccactcagtaccagtcgttgaggcgtaagcggagaaatgtcaggcaatatagtta |
19810977 |
T |
|
| Q |
212 |
acaaagcaccgagtgatgtc |
231 |
Q |
| |
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|||| ||||| ||||||||| |
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| T |
19810976 |
acaaggcacctagtgatgtc |
19810957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 32687471 - 32687244
Alignment:
| Q |
8 |
aggtgctgttacatgaggaacatggtgttgatccactgactgccatctttagaatcaatgacttggcaagtaattccattgaacaaaatcaggagcttgc |
107 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||| |||||||||| | |||||||| ||| |||||| || |||||||||||| ||| |||||||| |
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| T |
32687471 |
aggttctgttacacgaggaacatggtgttgatccattgactgccatgtgcagaatcaaggacctggcaattacttccattgaacagaattcagagcttgc |
32687372 |
T |
|
| Q |
108 |
aagtactcctttgtacattgctctggagc----tatagcttatgccacgccggccactcagtatcagtcattgaagcgtaagcggagaaatgtcaggcaa |
203 |
Q |
| |
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| T |
32687371 |
aggtactcctttatacattgctatggagcagattatagctcatgccacgcctgccactcagtaccagtcgttgaggcgtaagcggagaaatgtcaggcag |
32687272 |
T |
|
| Q |
204 |
tatagttcacaaagcaccgagtgatgtc |
231 |
Q |
| |
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|||| || ||| |||| |||||||||| |
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|
| T |
32687271 |
tataattaacagggcactgagtgatgtc |
32687244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 1199651 - 1199432
Alignment:
| Q |
16 |
ttacatgaggaacatggtgttgatccactgactgccatctttagaatcaatgacttggcaagtaattccattgaacaaaatcaggagcttgcaagtactc |
115 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| | |||||||| || |||||| | |||||||||||| ||| | |||||||| |||||| |
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| T |
1199651 |
ttacatgaggaacatggtgttgatccattgactgccatgtgcagaatcaaagatctggcaattgcttccattgaacagaattcgaagcttgcaggtactc |
1199552 |
T |
|
| Q |
116 |
ctttgtacattgctctggagc----tatagcttatgccacgccggccactcagtatcagtcattgaagcgtaagcggagaaatgtcaggcaatatagttc |
211 |
Q |
| |
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|||| ||||||| | |||||| ||||||| |||||||||| ||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
1199551 |
ctttatacattgttatggagcagattatagctcatgccacgcctgccactcagtaccagtcgttgaggcgtaagcggagaaatgtcaggcaatatagtta |
1199452 |
T |
|
| Q |
212 |
acaaagcaccgagtgatgtc |
231 |
Q |
| |
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|||| ||||| ||||||||| |
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| T |
1199451 |
acaaggcacctagtgatgtc |
1199432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 26941810 - 26942015
Alignment:
| Q |
1 |
aattattaggtgctgttacatgaggaacatggtgttgatccactgactgccatctttagaatcaatgacttggcaagtaattccattgaacaaaatcagg |
100 |
Q |
| |
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|||||| |||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||||| || ||| | |||| ||||||| ||| | | |
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| T |
26941810 |
aattatgaggttctgttacatgaggaacatggtgttgatccattgactgccacgtgcagaatcaatgacctgacaatgacttccgttgaacagaattaag |
26941909 |
T |
|
| Q |
101 |
agcttgcaagtactcctttgtacattgctctggagc----tatagcttatgccacgccggccactcagtatcagtcattgaagcgtaagcggagaaatgt |
196 |
Q |
| |
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| |||||| |||||||||| ||||||||| |||||| ||||||| |||||||||| |||||||||| ||||| |||| |||||||||||||||||| |
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| T |
26941910 |
aacttgcaggtactcctttatacattgctatggagcggattatagctcatgccacgcctaccactcagtaccagtcgttgatgcgtaagcggagaaatgt |
26942009 |
T |
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| Q |
197 |
caggca |
202 |
Q |
| |
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|||||| |
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| T |
26942010 |
caggca |
26942015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 18295685 - 18295489
Alignment:
| Q |
22 |
gaggaacatggtgttgatccactgactgccatctttagaatcaatgacttggcaagtaattccattgaacaaaatcaggagcttgcaagtactcctttgt |
121 |
Q |
| |
|
||||||||||||||||| ||| || ||| ||||| || |||| | | |||||| ||||||||||||||| ||||||||| ||| |||||||| | |
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| T |
18295685 |
gaggaacatggtgttgagccattgtctgtcatctgcaggatcagggccctggcaattaattccattgaacagaatcaggagtacgcagacactcctttat |
18295586 |
T |
|
| Q |
122 |
acattgctctggagc----tatagcttatgccacgccggccactcagtatcagtcattgaagcgtaagcggagaaatgtcaggcaatatagttcaca |
214 |
Q |
| |
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|
| T |
18295585 |
acatggctatgaaacagattgtagctcaggccacgcctgcgactcagtacaagtcattgaggcgtaagcggagaaaggtcaggcaatatagttcaca |
18295489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 322245 - 322292
Alignment:
| Q |
159 |
actcagtatcagtcattgaagcgtaagcggagaaatgtcaggcaatat |
206 |
Q |
| |
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|||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
322245 |
actcagtaccagtcattgaggcgtaagcggagaaatgtcaggcaatat |
322292 |
T |
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