View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_19 (Length: 439)
Name: NF6865A_low_19
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 7 - 433
Target Start/End: Complemental strand, 33102513 - 33102087
Alignment:
| Q |
7 |
ctgagatgaacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatctagagaaacaacatcagaatcaaccttaaagg |
106 |
Q |
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| T |
33102513 |
ctgacatgaacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaagg |
33102414 |
T |
|
| Q |
107 |
aaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaacaaatgatcca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
33102413 |
aaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgataca |
33102314 |
T |
|
| Q |
207 |
ctgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaa |
306 |
Q |
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| T |
33102313 |
ctgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaa |
33102214 |
T |
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| Q |
307 |
agagagaagattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcag |
406 |
Q |
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| T |
33102213 |
agagagaagattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcag |
33102114 |
T |
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| Q |
407 |
ctgcgatgaacctatagttcatggcat |
433 |
Q |
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| T |
33102113 |
ctgcgatgaacctatagttcatggcat |
33102087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 52716730 - 52716666
Alignment:
| Q |
76 |
agagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
140 |
Q |
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| T |
52716730 |
agagaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttc |
52716666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 52711419 - 52711358
Alignment:
| Q |
79 |
gaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
140 |
Q |
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| T |
52711419 |
gaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttc |
52711358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 428
Target Start/End: Original strand, 10838577 - 10838990
Alignment:
| Q |
15 |
aacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatctagagaaacaacatcagaatcaaccttaaaggaaataata |
114 |
Q |
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| T |
10838577 |
aacatgtaacttcccatcatcaccaactgatgcatcagtttcaagaaaatctcttccatctaacgacataacgtccgaatcgaccttaaaggaaacgatg |
10838676 |
T |
|
| Q |
115 |
gaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaacaaatgatccactgaagaa |
214 |
Q |
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||||| || ||||| |||||||| ||||| |||| ||||||||||||||| |||||||||||||| | || | |||||| ||||| || |||||||||| |
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| T |
10838677 |
gaagccgcggtttctggaaactgctccatgattaaaagcttagcaccacggtactcaaaaagaaaaagcaaaagagtgtaccaaataatacactgaagaa |
10838776 |
T |
|
| Q |
215 |
ccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagagaa |
314 |
Q |
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| T |
10838777 |
ccacaacttgaaccattaagctacctgaataatcaccatacatagcaattaacaaaggaattcccataaccaaagtgttaggaagtgttgataatgaaaa |
10838876 |
T |
|
| Q |
315 |
gattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgatg |
414 |
Q |
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| T |
10838877 |
gattgttatcatccattctaaattgccatttttagtgaacaatgtccataatgaaagtgctactagcatgatgattttttgaagtgtgtctgcagctatg |
10838976 |
T |
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| Q |
415 |
aacctatagttcat |
428 |
Q |
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| T |
10838977 |
aacctgaagttcat |
10838990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 34971296 - 34971055
Alignment:
| Q |
16 |
acatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatctagagaaacaacatcagaatcaaccttaaaggaaataatag |
115 |
Q |
| |
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|||||||| |||||||| |||||||| ||||| || || | ||| ||| | ||||| | ||||| ||||||||||||||| || || || ||||||| |
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| T |
34971296 |
acatgaagtttaccatcttcaccaacttcagcttcagtttgaagtggctctttaccatccaaagaaagaacatcagaatcaactttgaatgatataatag |
34971197 |
T |
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| Q |
116 |
aagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaacaaatgatccactgaagaac |
215 |
Q |
| |
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| T |
34971196 |
aaccagcagtatcaggaaactgttcaacaatgagaatcctagcacccctatactcaaacaaaaacaacatcaatgtataccaaatgatacattgaagaac |
34971097 |
T |
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| Q |
216 |
cacaacttgaaccataagggtaccggaatattcaccatacat |
257 |
Q |
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| T |
34971096 |
aactatttgaaccataagggtaccagaatcatcaccatacat |
34971055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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