View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_192 (Length: 246)

Name: NF6865A_low_192
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_192
NF6865A_low_192
[»] chr3 (3 HSPs)
chr3 (15-246)||(48384119-48384350)
chr3 (21-246)||(48397791-48398016)
chr3 (21-245)||(48364512-48364736)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 48384119 - 48384350
Alignment:
Q  15 gacatcattgatatggcaaagcttcacaagatgaagcaagggaaagtttcctcgtggactatgaagattttggtagatgcagtgatgaattcaaggctgt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48384119 gacatcattgatatggcaaagcttcacaagatgaagcaagggaaagtttcctcgtggactatgaagattttggtagatgcagtgatgaattcaaggctgt 48384218  T
Q  115 ccacaatctctaattcactggatgaaagtttttatgatgtagaaaatgaaccgaatgataaagaaattactaatgagatggaagcaactgctgctgccta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48384219 ccacaatctctaattcactggatgaaagtttttatgatgtagaaaatgaaccgaatgataaagaaattactaatgagatggaagcaactgctgctgccta 48384318  T
Q  215 ttccgttttcaggaatgttgctgcttccccta 246  Q
    || |||||||||||||||||||||||||||||    
T  48384319 ttacgttttcaggaatgttgctgcttccccta 48384350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 48398016 - 48397791
Alignment:
Q  21 attgatatggcaaagcttcacaagatgaagcaagggaaagtttcctcgtggactatgaagattttggtagatgcagtgatgaattcaaggctgtccacaa 120  Q
    |||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48398016 attgatatggcaaagcttcacaagatgaagcaagagaaagtttcttcatggactatgaagattttggtagatgcagtgatgaactcaaggctgtccacaa 48397917  T
Q  121 tctctaattcactggatgaaagtttttatgatgtagaaaatgaaccgaatgataaagaaattactaatgagatggaagcaactgctgctgcctattccgt 220  Q
    ||||||| || || |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48397916 tctctaactctctagatgaaagtttttatgatgtagaaaacgaacagaatgataaagaaattactaatgagatggaagcaactgctgctgcctattacgt 48397817  T
Q  221 tttcaggaatgttgctgcttccccta 246  Q
    ||||||||||||||||||||||||||    
T  48397816 tttcaggaatgttgctgcttccccta 48397791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 21 - 245
Target Start/End: Original strand, 48364512 - 48364736
Alignment:
Q  21 attgatatggcaaagcttcacaagatgaagcaagggaaagtttcctcgtggactatgaagattttggtagatgcagtgatgaattcaaggctgtccacaa 120  Q
    |||||||||||| |||||||||| |||||||||| |||||| ||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  48364512 attgatatggcacagcttcacaacatgaagcaagagaaagtctccgcgtggaccatgaagattttggtagacgcagtgatgaattcaaggctgtccacaa 48364611  T
Q  121 tctctaattcactggatgaaagtttttatgatgtagaaaatgaaccgaatgataaagaaattactaatgagatggaagcaactgctgctgcctattccgt 220  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||  ||    
T  48364612 tctctaattcacttgatgaaagtttttatgatgtaaaaaatgaacggactggtaaagaaattactaatgagatggaagcaactgctgctgcctattatgt 48364711  T
Q  221 tttcaggaatgttgctgcttcccct 245  Q
    ||||| |||||||||||||||||||    
T  48364712 tttcaagaatgttgctgcttcccct 48364736  T

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