View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6865A_low_195 (Length: 245)
Name: NF6865A_low_195
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_195 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 36971105 - 36970896
Alignment:
| Q |
15 |
gaaatgaacgatgaaggagataaaacgttgcccatagcgaatgtgggtagaataatgaagcaaaatcttcctcccaatgcaaagatctcaaaagaaagca |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36971105 |
gaaatgaacgatgagggagataaaacgttgcccatagcgaatgtgggtagaataatgaagcaaaatcttcctcccaatgcaaagatctcaaaagaaagca |
36971006 |
T |
|
| Q |
115 |
aacagttgatgcaagaatgtgcgacagagttcataagtttcgtgacaggtgaagcatctgacaagtgtcacaaggagaatcgcaagaccgttaatgggga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36971005 |
aacagttgatgcaagaatgtgcgacagaattcataagtttcgtgacaggtgaagcatctgacaagtgtcacaaggagaatcgcaagaccgttaatgggga |
36970906 |
T |
|
| Q |
215 |
tgatatctgt |
224 |
Q |
| |
|
||||||||| |
|
|
| T |
36970905 |
cgatatctgt |
36970896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 39786381 - 39786325
Alignment:
| Q |
162 |
ggtgaagcatctgacaagtgtcacaaggagaatcgcaagaccgttaatggggatgat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| || ||||| |||||| |
|
|
| T |
39786381 |
ggtgaagcatctgacaagtgtcacaaggagaagcgcaagacagtgaatggtgatgat |
39786325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 56067978 - 56068049
Alignment:
| Q |
122 |
gatgcaagaatgtgcgacagagttcataagtttcgtgacaggtgaagcatctgacaagtgtcacaaggagaa |
193 |
Q |
| |
|
||||||||| |||| ||||||||||||| ||| | ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
56067978 |
gatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaa |
56068049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University