View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_20 (Length: 438)
Name: NF6865A_low_20
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 418
Target Start/End: Complemental strand, 38869630 - 38869215
Alignment:
| Q |
9 |
aatgagatggacatcaggaagattatggaagacgtccaaaacttcagtattttctctctcnnnnnnnnnncttt-------ctaaaattattttccattg |
101 |
Q |
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| T |
38869630 |
aatgaaatggacatcaggaagattatggaagacgtccaaaacttcagtattttctctctctttttttttttttttttttttctaaaattattttccattg |
38869531 |
T |
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| Q |
102 |
aatgttgtctatcttctcattgaatctgttttctgtttttgatgcacttcaaatatatgatcaatgacgtttctgcattgtgattttaaatgataagaac |
201 |
Q |
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| T |
38869530 |
aatgttgtctatcttctcgttgaatctgttttctgtttttgatgcacttcaaatatatgatcaatg-cgtttctgcattatgattttaaatgataagaac |
38869432 |
T |
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| Q |
202 |
gaatttgaatgctaagtacaaaatatttgttcattcattattttaaatttggggtgttggagttaaataatttatggtaagcatattcacctgatttgtt |
301 |
Q |
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| T |
38869431 |
gaatttgaatgctaagtacaaaatatttgttcattcattattttaaatttggggtgttggagttaaataatttatggtaagcatattcacctgatttgtt |
38869332 |
T |
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| Q |
302 |
accttcttttttataatggctactcattgcaatatatcttaggcaactcgcatatgacatggaaagagcgcaaaaaggttgaagataggaaggttgtttc |
401 |
Q |
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| T |
38869331 |
accttcttttttataatggctactcattgcaatatatcttaggcaactcgcatatgacatggaaagagcgcaaaaaggttgaagataggaaggttgtttc |
38869232 |
T |
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| Q |
402 |
ccttggtgggaaggtga |
418 |
Q |
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| T |
38869231 |
ccttggtgggaaggtga |
38869215 |
T |
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