View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_202 (Length: 244)

Name: NF6865A_low_202
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_202
NF6865A_low_202
[»] chr8 (2 HSPs)
chr8 (89-181)||(34824219-34824311)
chr8 (181-231)||(34824144-34824194)
[»] chr7 (1 HSPs)
chr7 (53-173)||(44147806-44147926)
[»] chr2 (1 HSPs)
chr2 (53-175)||(5751738-5751860)
[»] chr1 (1 HSPs)
chr1 (82-149)||(32652561-32652628)
[»] chr4 (1 HSPs)
chr4 (89-136)||(23239399-23239446)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 34824311 - 34824219
Alignment:
Q  89 acttgccgcagtccatctagatagtaacaagtggggtgtaaatgttcaaccattatctggttctccggctaattctgcagtatacacgatgca 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34824311 acttgccgcagtccatctagatagtaacaagtggggtgtaaatgttcaaccattatctggttctccggctaattctgcagtatacacgatgca 34824219  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 34824194 - 34824144
Alignment:
Q  181 atggtaaactgtctttctctaactgaagtttgattcaactgttattgatgt 231  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34824194 atggtaaactgtctttctctaactgaagtttgatttaactgttattgatgt 34824144  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 44147926 - 44147806
Alignment:
Q  53 cattgatgagcttgaaaaactatgtcaaaaaagggtacttgccgcagtccatctagatagtaacaagtggggtgtaaatgttcaaccattatctggttct 152  Q
    |||||||||| |||||| |||||||||  | |||| |||||| ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||     
T  44147926 cattgatgagattgaaatactatgtcaggagagggcacttgctgcaatccatctggatagtaacaagtggggtgtaaatgttcaaccgttatctggttcc 44147827  T
Q  153 ccggctaattctgcagtatac 173  Q
    ||||| |||||||||||||||    
T  44147826 ccggcgaattctgcagtatac 44147806  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 5751860 - 5751738
Alignment:
Q  53 cattgatgagcttgaaaaactatgtcaaaaaagggtacttgccgcagtccatctagatagtaacaagtggggtgtaaatgttcaaccattatctggttct 152  Q
    |||||||||||| ||||  ||||| ||| |||||| | | || ||| | ||||||||| || |||||||||||||||||||||||||||||||||||||     
T  5751860 cattgatgagctcgaaatcctatgccaacaaagggcattggctgcatttcatctagatggtgacaagtggggtgtaaatgttcaaccattatctggttcc 5751761  T
Q  153 ccggctaattctgcagtatacac 175  Q
    |||||||||| ||||||||||||    
T  5751760 ccggctaattttgcagtatacac 5751738  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 32652561 - 32652628
Alignment:
Q  82 aaagggtacttgccgcagtccatctagatagtaacaagtggggtgtaaatgttcaaccattatctggt 149  Q
    ||||||||||||||||| ||||||||||| |||| ||||||||||||| |||| |||||||| |||||    
T  32652561 aaagggtacttgccgcattccatctagattgtaataagtggggtgtaagtgttaaaccattagctggt 32652628  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 23239399 - 23239446
Alignment:
Q  89 acttgccgcagtccatctagatagtaacaagtggggtgtaaatgttca 136  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  23239399 acttgccgcattccatctagattgtaacaagtggggtgtaaatgttca 23239446  T

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